data_XKI # _chem_comp.id XKI _chem_comp.name "3-{2-[3-({(6M)-2,4-diamino-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XKI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F85 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XKI C15 C1 C 0 1 N N N N N N -7.499 -13.255 15.403 6.216 -1.969 1.681 C15 XKI 1 XKI C8 C2 C 0 1 Y N N N N N -2.090 -13.353 18.566 3.836 1.957 -1.992 C8 XKI 2 XKI C9 C3 C 0 1 Y N N N N N -2.624 -13.231 19.834 4.799 2.348 -2.901 C9 XKI 3 XKI C14 C4 C 0 1 N N N N N N -6.572 -12.793 16.516 5.811 -1.234 0.430 C14 XKI 4 XKI C13 C5 C 0 1 N N N N N N -5.232 -13.471 16.427 5.949 0.273 0.656 C13 XKI 5 XKI C12 C6 C 0 1 Y N N N N N -4.326 -13.370 17.629 5.544 1.008 -0.596 C12 XKI 6 XKI C11 C7 C 0 1 Y N N N N N -4.825 -13.264 18.923 6.503 1.392 -1.514 C11 XKI 7 XKI C10 C8 C 0 1 Y N N N N N -3.983 -13.182 20.015 6.132 2.066 -2.662 C10 XKI 8 XKI C5 C9 C 0 1 N N N N N N -0.860 -13.564 14.463 0.991 0.729 0.874 C5 XKI 9 XKI C3 C10 C 0 1 Y N N N N N -0.653 -9.973 13.783 -2.649 0.829 1.445 C3 XKI 10 XKI C4 C11 C 0 1 N N N N N N -1.284 -12.282 13.784 -0.463 1.070 0.539 C4 XKI 11 XKI N2 N1 N 0 1 Y N N N N N -0.485 -8.240 12.125 -4.543 2.182 1.779 N2 XKI 12 XKI C1 C12 C 0 1 Y N N N N N -1.111 -7.427 12.987 -5.287 1.275 1.163 C1 XKI 13 XKI C21 C13 C 0 1 Y N N N N N -2.806 -9.960 18.507 -1.834 -3.716 -0.728 C21 XKI 14 XKI C20 C14 C 0 1 Y N N N N N -1.489 -9.587 18.366 -2.540 -2.869 -1.564 C20 XKI 15 XKI C19 C15 C 0 1 N N N N N N 0.477 -8.958 16.960 -3.842 -0.774 -1.982 C19 XKI 16 XKI C18 C16 C 0 1 Y N N N N N -0.967 -9.318 17.102 -3.073 -1.695 -1.071 C18 XKI 17 XKI C22 C17 C 0 1 Y N N N N N -3.612 -10.083 17.401 -1.663 -3.394 0.606 C22 XKI 18 XKI C16 C18 C 0 1 Y N N N N N -1.290 -9.094 14.616 -3.468 -0.104 0.808 C16 XKI 19 XKI C17 C19 C 0 1 Y N N N N N -1.790 -9.424 15.978 -2.898 -1.363 0.272 C17 XKI 20 XKI C2 C20 C 0 1 Y N N N N N -0.255 -9.493 12.517 -3.237 1.999 1.938 C2 XKI 21 XKI C23 C21 C 0 1 Y N N N N N -3.111 -9.815 16.149 -2.191 -2.223 1.110 C23 XKI 22 XKI C6 C22 C 0 1 N N N N N N -1.066 -13.505 15.952 1.903 1.227 -0.248 C6 XKI 23 XKI C7 C23 C 0 1 Y N N N N N -2.934 -13.414 17.472 4.206 1.285 -0.836 C7 XKI 24 XKI F1 F1 F 0 1 N N N N N N 1.033 -8.582 18.098 -3.882 -1.318 -3.270 F1 XKI 25 XKI F2 F2 F 0 1 N N N N N N 1.186 -10.012 16.510 -5.146 -0.623 -1.500 F2 XKI 26 XKI F3 F3 F 0 1 N N N N N N 0.684 -7.975 16.092 -3.212 0.475 -2.023 F3 XKI 27 XKI N1 N2 N 0 1 N N N N N N -1.354 -6.157 12.624 -6.647 1.506 1.018 N1 XKI 28 XKI N3 N3 N 0 1 N N N N N N 0.386 -10.295 11.640 -2.466 2.955 2.585 N3 XKI 29 XKI N4 N4 N 0 1 Y N N N N N -1.506 -7.813 14.213 -4.772 0.155 0.688 N4 XKI 30 XKI O1 O1 O 0 1 N N N N N N -0.364 -11.251 14.180 -1.315 0.604 1.587 O1 XKI 31 XKI O2 O2 O 0 1 N N N N N N -2.480 -13.523 16.186 3.261 0.909 0.065 O2 XKI 32 XKI O3 O3 O 0 1 N N N N N N -7.454 -12.650 14.323 6.573 -1.350 2.656 O3 XKI 33 XKI O4 O4 O 0 1 N N N N N N -8.233 -14.238 15.620 6.175 -3.310 1.715 O4 XKI 34 XKI H1 H1 H 0 1 N N N N N N -1.020 -13.400 18.430 2.795 2.178 -2.180 H1 XKI 35 XKI H2 H2 H 0 1 N N N N N N -1.967 -13.174 20.689 4.512 2.874 -3.800 H2 XKI 36 XKI H3 H3 H 0 1 N N N N N N -6.429 -11.705 16.435 6.456 -1.538 -0.395 H3 XKI 37 XKI H4 H4 H 0 1 N N N N N N -7.031 -13.032 17.487 4.775 -1.472 0.188 H4 XKI 38 XKI H5 H5 H 0 1 N N N N N N -5.414 -14.539 16.239 5.304 0.577 1.480 H5 XKI 39 XKI H6 H6 H 0 1 N N N N N N -4.696 -13.034 15.571 6.985 0.511 0.897 H6 XKI 40 XKI H7 H7 H 0 1 N N N N N N -5.894 -13.245 19.077 7.543 1.166 -1.333 H7 XKI 41 XKI H8 H8 H 0 1 N N N N N N -4.393 -13.080 21.009 6.884 2.372 -3.375 H8 XKI 42 XKI H9 H9 H 0 1 N N N N N N -1.453 -14.396 14.055 1.270 1.211 1.811 H9 XKI 43 XKI H10 H10 H 0 1 N N N N N N 0.207 -13.739 14.258 1.096 -0.351 0.976 H10 XKI 44 XKI H11 H11 H 0 1 N N N N N N -2.304 -12.013 14.095 -0.568 2.150 0.438 H11 XKI 45 XKI H12 H12 H 0 1 N N N N N N -1.256 -12.410 12.692 -0.743 0.588 -0.398 H12 XKI 46 XKI H13 H13 H 0 1 N N N N N N -3.207 -10.157 19.490 -1.420 -4.633 -1.118 H13 XKI 47 XKI H14 H14 H 0 1 N N N N N N -0.857 -9.502 19.238 -2.675 -3.126 -2.604 H14 XKI 48 XKI H15 H15 H 0 1 N N N N N N -4.641 -10.391 17.515 -1.114 -4.062 1.255 H15 XKI 49 XKI H16 H16 H 0 1 N N N N N N -3.754 -9.910 15.287 -2.056 -1.974 2.152 H16 XKI 50 XKI H17 H17 H 0 1 N N N N N N -0.594 -14.374 16.432 1.623 0.745 -1.185 H17 XKI 51 XKI H18 H18 H 0 1 N N N N N N -0.629 -12.580 16.356 1.797 2.307 -0.350 H18 XKI 52 XKI H19 H19 H 0 1 N N N N N N -1.006 -6.002 11.700 -7.040 2.322 1.365 H19 XKI 53 XKI H20 H20 H 0 1 N N N N N N -2.340 -5.988 12.641 -7.205 0.852 0.569 H20 XKI 54 XKI H21 H21 H 0 1 N N N N N N 0.587 -9.783 10.805 -2.880 3.763 2.925 H21 XKI 55 XKI H22 H22 H 0 1 N N N N N N 1.240 -10.618 12.047 -1.512 2.814 2.697 H22 XKI 56 XKI H23 H23 H 0 1 N N N N N N -8.736 -14.437 14.839 6.444 -3.737 2.540 H23 XKI 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XKI N3 C2 SING N N 1 XKI N2 C2 DOUB Y N 2 XKI N2 C1 SING Y N 3 XKI C2 C3 SING Y N 4 XKI N1 C1 SING N N 5 XKI C1 N4 DOUB Y N 6 XKI C3 O1 SING N N 7 XKI C3 C16 DOUB Y N 8 XKI C4 O1 SING N N 9 XKI C4 C5 SING N N 10 XKI N4 C16 SING Y N 11 XKI O3 C15 DOUB N N 12 XKI C5 C6 SING N N 13 XKI C16 C17 SING N N 14 XKI C15 O4 SING N N 15 XKI C15 C14 SING N N 16 XKI C6 O2 SING N N 17 XKI C17 C23 DOUB Y N 18 XKI C17 C18 SING Y N 19 XKI F3 C19 SING N N 20 XKI C23 C22 SING Y N 21 XKI O2 C7 SING N N 22 XKI C13 C14 SING N N 23 XKI C13 C12 SING N N 24 XKI F2 C19 SING N N 25 XKI C19 C18 SING N N 26 XKI C19 F1 SING N N 27 XKI C18 C20 DOUB Y N 28 XKI C22 C21 DOUB Y N 29 XKI C7 C12 DOUB Y N 30 XKI C7 C8 SING Y N 31 XKI C12 C11 SING Y N 32 XKI C20 C21 SING Y N 33 XKI C8 C9 DOUB Y N 34 XKI C11 C10 DOUB Y N 35 XKI C9 C10 SING Y N 36 XKI C8 H1 SING N N 37 XKI C9 H2 SING N N 38 XKI C14 H3 SING N N 39 XKI C14 H4 SING N N 40 XKI C13 H5 SING N N 41 XKI C13 H6 SING N N 42 XKI C11 H7 SING N N 43 XKI C10 H8 SING N N 44 XKI C5 H9 SING N N 45 XKI C5 H10 SING N N 46 XKI C4 H11 SING N N 47 XKI C4 H12 SING N N 48 XKI C21 H13 SING N N 49 XKI C20 H14 SING N N 50 XKI C22 H15 SING N N 51 XKI C23 H16 SING N N 52 XKI C6 H17 SING N N 53 XKI C6 H18 SING N N 54 XKI N1 H19 SING N N 55 XKI N1 H20 SING N N 56 XKI N3 H21 SING N N 57 XKI N3 H22 SING N N 58 XKI O4 H23 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XKI SMILES ACDLabs 12.01 "Nc1nc(c2ccccc2C(F)(F)F)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1" XKI InChI InChI 1.06 "InChI=1S/C23H23F3N4O4/c24-23(25,26)16-8-3-2-7-15(16)19-20(21(27)30-22(28)29-19)34-13-5-12-33-17-9-4-1-6-14(17)10-11-18(31)32/h1-4,6-9H,5,10-13H2,(H,31,32)(H4,27,28,29,30)" XKI InChIKey InChI 1.06 OUIRZIUAXRLDKD-UHFFFAOYSA-N XKI SMILES_CANONICAL CACTVS 3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3ccccc3C(F)(F)F" XKI SMILES CACTVS 3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3ccccc3C(F)(F)F" XKI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3ccccc3C(F)(F)F" XKI SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3ccccc3C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XKI "SYSTEMATIC NAME" ACDLabs 12.01 "3-{2-[3-({(6M)-2,4-diamino-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" XKI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XKI "Create component" 2022-11-23 RCSB XKI "Initial release" 2023-12-13 RCSB #