data_XKJ # _chem_comp.id XKJ _chem_comp.name "dodecyl beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C18 H36 O6" _chem_comp.mon_nstd_parent_comp_id BGC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-17 _chem_comp.pdbx_modified_date 2021-07-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.475 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XKJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L16 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XKJ C6 C1 C 0 1 N N N -27.572 47.862 -4.402 5.363 2.747 -0.403 C13 XKJ 1 XKJ C3 C2 C 0 1 N N S -26.403 45.382 -7.201 6.251 -0.945 0.228 C17 XKJ 2 XKJ C24 C3 C 0 1 N N N -28.439 48.513 -10.594 0.106 -0.900 -0.220 C24 XKJ 3 XKJ C26 C4 C 0 1 N N N -30.377 46.899 -11.330 -2.385 -0.705 -0.232 C26 XKJ 4 XKJ C28 C5 C 0 1 N N N -30.157 44.346 -11.878 -4.876 -0.511 -0.244 C28 XKJ 5 XKJ C5 C6 C 0 1 N N R -27.754 47.036 -5.743 5.245 1.339 0.183 C14 XKJ 6 XKJ C4 C7 C 0 1 N N S -26.820 45.788 -5.756 6.410 0.479 -0.314 C16 XKJ 7 XKJ C1 C8 C 0 1 N N R -27.118 47.615 -8.051 3.785 -0.562 0.282 C18 XKJ 8 XKJ C2 C9 C 0 1 N N R -25.929 46.628 -7.965 4.892 -1.498 -0.211 C19 XKJ 9 XKJ C23 C10 C 0 1 N N N -27.885 49.422 -9.461 1.403 -0.301 0.328 C23 XKJ 10 XKJ C25 C11 C 0 1 N N N -29.904 48.023 -10.378 -1.088 -0.107 0.316 C25 XKJ 11 XKJ C27 C12 C 0 1 N N N -29.479 45.627 -11.328 -3.579 0.088 0.304 C27 XKJ 12 XKJ C29 C13 C 0 1 N N N -30.506 43.290 -10.800 -6.070 0.282 0.292 C29 XKJ 13 XKJ C30 C14 C 0 1 N N N -29.293 42.422 -10.361 -7.367 -0.316 -0.256 C30 XKJ 14 XKJ C31 C15 C 0 1 N N N -29.008 41.174 -11.242 -8.561 0.477 0.280 C31 XKJ 15 XKJ C32 C16 C 0 1 N N N -30.252 40.325 -11.597 -9.858 -0.122 -0.268 C32 XKJ 16 XKJ C33 C17 C 0 1 N N N -31.140 39.990 -10.380 -11.051 0.671 0.268 C33 XKJ 17 XKJ C34 C18 C 0 1 N N N -30.358 39.452 -9.186 -12.349 0.072 -0.280 C34 XKJ 18 XKJ O6 O1 O 0 1 N N N -26.180 47.916 -4.037 4.344 3.581 0.151 O08 XKJ 19 XKJ O5 O2 O 0 1 N N N -27.546 47.987 -6.775 4.010 0.752 -0.234 O15 XKJ 20 XKJ O4 O3 O 0 1 N N N -27.547 44.734 -5.190 7.643 1.032 0.150 O20 XKJ 21 XKJ O2 O4 O 0 1 N N N -25.572 46.265 -9.263 4.702 -2.799 0.349 O21 XKJ 22 XKJ O1 O5 O 0 1 N N N -26.788 48.782 -8.780 2.518 -1.042 -0.172 O22 XKJ 23 XKJ O3 O6 O 0 1 N N N -25.300 44.526 -7.074 7.294 -1.773 -0.290 O35 XKJ 24 XKJ H61 H1 H 0 1 N N N -27.949 48.885 -4.551 6.342 3.160 -0.160 H131 XKJ 25 XKJ H62 H2 H 0 1 N N N -28.141 47.376 -3.596 5.247 2.701 -1.486 H132 XKJ 26 XKJ H3 H3 H 0 1 N N N -27.248 44.908 -7.722 6.305 -0.929 1.317 H171 XKJ 27 XKJ H241 H4 H 0 0 N N N -27.790 47.628 -10.672 0.115 -0.851 -1.309 H241 XKJ 28 XKJ H242 H5 H 0 0 N N N -28.402 49.079 -11.536 0.023 -1.939 0.097 H242 XKJ 29 XKJ H262 H6 H 0 0 N N N -30.398 47.302 -12.353 -2.376 -0.657 -1.321 H262 XKJ 30 XKJ H261 H7 H 0 0 N N N -31.393 46.602 -11.032 -2.468 -1.745 0.085 H261 XKJ 31 XKJ H281 H8 H 0 0 N N N -31.088 44.641 -12.384 -4.867 -0.463 -1.333 H281 XKJ 32 XKJ H282 H9 H 0 0 N N N -29.475 43.882 -12.606 -4.959 -1.550 0.073 H282 XKJ 33 XKJ H5 H10 H 0 1 N N N -28.794 46.679 -5.773 5.272 1.394 1.271 H141 XKJ 34 XKJ H4 H11 H 0 1 N N N -25.916 46.010 -5.170 6.407 0.456 -1.404 H161 XKJ 35 XKJ H1 H12 H 0 1 N N N -27.937 47.093 -8.568 3.793 -0.531 1.371 H181 XKJ 36 XKJ H2 H13 H 0 1 N N N -25.094 47.100 -7.426 4.858 -1.561 -1.299 H191 XKJ 37 XKJ H232 H14 H 0 0 N N N -27.535 50.369 -9.897 1.486 0.739 0.011 H232 XKJ 38 XKJ H231 H15 H 0 0 N N N -28.688 49.626 -8.738 1.394 -0.349 1.417 H231 XKJ 39 XKJ H252 H16 H 0 0 N N N -30.573 48.885 -10.513 -1.097 -0.155 1.405 H252 XKJ 40 XKJ H251 H17 H 0 0 N N N -29.988 47.651 -9.346 -1.005 0.933 -0.001 H251 XKJ 41 XKJ H271 H18 H 0 0 N N N -29.168 45.430 -10.291 -3.588 0.039 1.393 H271 XKJ 42 XKJ H272 H19 H 0 0 N N N -28.592 45.835 -11.944 -3.496 1.127 -0.013 H272 XKJ 43 XKJ H291 H20 H 0 0 N N N -30.897 43.813 -9.915 -6.079 0.234 1.381 H291 XKJ 44 XKJ H292 H21 H 0 0 N N N -31.282 42.623 -11.205 -5.987 1.322 -0.025 H292 XKJ 45 XKJ H302 H22 H 0 0 N N N -29.478 42.076 -9.333 -7.358 -0.268 -1.345 H302 XKJ 46 XKJ H301 H23 H 0 0 N N N -28.397 43.060 -10.377 -7.450 -1.356 0.061 H301 XKJ 47 XKJ H312 H24 H 0 0 N N N -28.298 40.530 -10.702 -8.570 0.428 1.368 H312 XKJ 48 XKJ H311 H25 H 0 0 N N N -28.550 41.517 -12.181 -8.478 1.516 -0.037 H311 XKJ 49 XKJ H322 H26 H 0 0 N N N -30.858 40.884 -12.326 -9.849 -0.074 -1.357 H322 XKJ 50 XKJ H321 H27 H 0 0 N N N -29.912 39.382 -12.049 -9.940 -1.162 0.049 H321 XKJ 51 XKJ H331 H28 H 0 0 N N N -31.664 40.906 -10.069 -11.061 0.623 1.356 H331 XKJ 52 XKJ H332 H29 H 0 0 N N N -31.876 39.231 -10.684 -10.969 1.711 -0.049 H332 XKJ 53 XKJ H343 H30 H 0 0 N N N -31.052 39.236 -8.360 -12.340 0.121 -1.369 H343 XKJ 54 XKJ H342 H31 H 0 0 N N N -29.835 38.529 -9.476 -12.431 -0.967 0.036 H342 XKJ 55 XKJ H341 H32 H 0 0 N N N -29.623 40.203 -8.861 -13.199 0.637 0.101 H341 XKJ 56 XKJ HO6 H33 H 0 1 N Y N -26.082 48.413 -3.233 4.359 4.491 -0.177 H1 XKJ 57 XKJ HO4 H34 H 0 1 N Y N -27.809 44.967 -4.307 8.425 0.534 -0.124 H201 XKJ 58 XKJ HO2 H35 H 0 1 N Y N -24.842 45.658 -9.233 3.857 -3.208 0.116 H211 XKJ 59 XKJ HO3 H36 H 0 1 N Y N -25.559 43.742 -6.604 7.255 -2.690 0.013 H351 XKJ 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XKJ C28 C27 SING N N 1 XKJ C28 C29 SING N N 2 XKJ C32 C31 SING N N 3 XKJ C32 C33 SING N N 4 XKJ C26 C27 SING N N 5 XKJ C26 C25 SING N N 6 XKJ C31 C30 SING N N 7 XKJ C29 C30 SING N N 8 XKJ C24 C25 SING N N 9 XKJ C24 C23 SING N N 10 XKJ C33 C34 SING N N 11 XKJ C23 O1 SING N N 12 XKJ O2 C2 SING N N 13 XKJ O1 C1 SING N N 14 XKJ C1 C2 SING N N 15 XKJ C1 O5 SING N N 16 XKJ C2 C3 SING N N 17 XKJ C3 O3 SING N N 18 XKJ C3 C4 SING N N 19 XKJ O5 C5 SING N N 20 XKJ C4 C5 SING N N 21 XKJ C4 O4 SING N N 22 XKJ C5 C6 SING N N 23 XKJ C6 O6 SING N N 24 XKJ C6 H61 SING N N 25 XKJ C6 H62 SING N N 26 XKJ C3 H3 SING N N 27 XKJ C24 H241 SING N N 28 XKJ C24 H242 SING N N 29 XKJ C26 H262 SING N N 30 XKJ C26 H261 SING N N 31 XKJ C28 H281 SING N N 32 XKJ C28 H282 SING N N 33 XKJ C5 H5 SING N N 34 XKJ C4 H4 SING N N 35 XKJ C1 H1 SING N N 36 XKJ C2 H2 SING N N 37 XKJ C23 H232 SING N N 38 XKJ C23 H231 SING N N 39 XKJ C25 H252 SING N N 40 XKJ C25 H251 SING N N 41 XKJ C27 H271 SING N N 42 XKJ C27 H272 SING N N 43 XKJ C29 H291 SING N N 44 XKJ C29 H292 SING N N 45 XKJ C30 H302 SING N N 46 XKJ C30 H301 SING N N 47 XKJ C31 H312 SING N N 48 XKJ C31 H311 SING N N 49 XKJ C32 H322 SING N N 50 XKJ C32 H321 SING N N 51 XKJ C33 H331 SING N N 52 XKJ C33 H332 SING N N 53 XKJ C34 H343 SING N N 54 XKJ C34 H342 SING N N 55 XKJ C34 H341 SING N N 56 XKJ O6 HO6 SING N N 57 XKJ O4 HO4 SING N N 58 XKJ O2 HO2 SING N N 59 XKJ O3 HO3 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XKJ SMILES ACDLabs 12.01 "C(O)C1C(C(O)C(C(O1)OCCCCCCCCCCCC)O)O" XKJ InChI InChI 1.03 "InChI=1S/C18H36O6/c1-2-3-4-5-6-7-8-9-10-11-12-23-18-17(22)16(21)15(20)14(13-19)24-18/h14-22H,2-13H2,1H3/t14-,15-,16+,17-,18-/m1/s1" XKJ InChIKey InChI 1.03 PYIDGJJWBIBVIA-UYTYNIKBSA-N XKJ SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O" XKJ SMILES CACTVS 3.385 "CCCCCCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O" XKJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O" XKJ SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCOC1C(C(C(C(O1)CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XKJ "SYSTEMATIC NAME" ACDLabs 12.01 "dodecyl beta-D-glucopyranoside" XKJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{S},6~{R})-2-dodecoxy-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support XKJ "CARBOHYDRATE ISOMER" D PDB ? XKJ "CARBOHYDRATE RING" pyranose PDB ? XKJ "CARBOHYDRATE ANOMER" beta PDB ? XKJ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # _pdbx_chem_comp_related.comp_id XKJ _pdbx_chem_comp_related.related_comp_id BGC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 XKJ C6 BGC C6 "Carbohydrate core" 2 XKJ C3 BGC C3 "Carbohydrate core" 3 XKJ C5 BGC C5 "Carbohydrate core" 4 XKJ C4 BGC C4 "Carbohydrate core" 5 XKJ C1 BGC C1 "Carbohydrate core" 6 XKJ C2 BGC C2 "Carbohydrate core" 7 XKJ O6 BGC O6 "Carbohydrate core" 8 XKJ O5 BGC O5 "Carbohydrate core" 9 XKJ O4 BGC O4 "Carbohydrate core" 10 XKJ O2 BGC O2 "Carbohydrate core" 11 XKJ O1 BGC O1 "Carbohydrate core" 12 XKJ O3 BGC O3 "Carbohydrate core" 13 XKJ H61 BGC H61 "Carbohydrate core" 14 XKJ H62 BGC H62 "Carbohydrate core" 15 XKJ H3 BGC H3 "Carbohydrate core" 16 XKJ H5 BGC H5 "Carbohydrate core" 17 XKJ H4 BGC H4 "Carbohydrate core" 18 XKJ H1 BGC H1 "Carbohydrate core" 19 XKJ H2 BGC H2 "Carbohydrate core" 20 XKJ HO6 BGC HO6 "Carbohydrate core" 21 XKJ HO4 BGC HO4 "Carbohydrate core" 22 XKJ HO2 BGC HO2 "Carbohydrate core" 23 XKJ HO3 BGC HO3 "Carbohydrate core" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XKJ "Create component" 2020-12-17 RCSB XKJ "Initial release" 2021-08-04 RCSB ##