data_XKK # _chem_comp.id XKK _chem_comp.name ;5'-O-[N-(3-Indolepropionic acid)sulfamoyl] 2-aminoethenoadenosine ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 N8 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2~{R},3~{S},4~{R},5~{R})-5-(5-azanylimidazo[2,1-f]purin-3-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[3-(1~{H}-indol-3-yl)propanoyl]sulfamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-07 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 556.551 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XKK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PAF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XKK C2 C1 C 0 1 Y N N 9.800 5.602 -1.027 5.834 0.520 -0.434 C2 XKK 1 XKK C4 C2 C 0 1 Y N N 7.956 5.636 0.301 3.556 0.102 -0.292 C4 XKK 2 XKK C5 C3 C 0 1 Y N N 7.065 5.321 -0.732 3.267 1.469 -0.347 C5 XKK 3 XKK C6 C4 C 0 1 Y N N 7.606 5.124 -2.023 4.389 2.402 -0.454 C6 XKK 4 XKK N3 N1 N 0 1 Y N N 9.281 5.796 0.192 4.828 -0.313 -0.338 N3 XKK 5 XKK O2 O1 O 0 1 N N N 5.389 4.792 9.407 -3.442 -4.623 0.773 O2 XKK 6 XKK "O5'" O2 O 0 1 N N N 6.298 4.912 7.085 -1.809 -3.639 -0.613 "O5'" XKK 7 XKK "C5'" C5 C 0 1 N N N 6.062 4.774 5.636 -0.971 -3.678 0.544 "C5'" XKK 8 XKK "C4'" C6 C 0 1 N N R 7.104 5.582 4.935 0.495 -3.606 0.115 "C4'" XKK 9 XKK "O4'" O3 O 0 1 N N N 7.248 5.048 3.615 0.773 -2.320 -0.464 "O4'" XKK 10 XKK "C3'" C7 C 0 1 N N S 6.825 7.090 4.825 1.410 -3.766 1.344 "C3'" XKK 11 XKK "O3'" O4 O 0 1 N N N 7.849 7.803 5.518 2.254 -4.910 1.195 "O3'" XKK 12 XKK "C2'" C8 C 0 1 N N R 6.736 7.321 3.317 2.254 -2.468 1.361 "C2'" XKK 13 XKK "O2'" O5 O 0 1 N N N 7.224 8.592 2.912 3.615 -2.749 1.695 "O2'" XKK 14 XKK N9 N2 N 0 1 Y N N 7.175 5.758 1.442 2.345 -0.536 -0.195 N9 XKK 15 XKK C8 C9 C 0 1 Y N N 5.872 5.506 1.035 1.376 0.424 -0.193 C8 XKK 16 XKK N7 N3 N 0 1 Y N N 5.777 5.263 -0.259 1.924 1.602 -0.283 N7 XKK 17 XKK N6 N4 N 0 1 Y N N 7.060 4.817 -3.197 4.485 3.713 -0.526 N6 XKK 18 XKK N1 N5 N 0 1 Y N N 8.988 5.289 -2.127 5.658 1.875 -0.495 N1 XKK 19 XKK C9 C10 C 0 1 Y N N 8.120 4.802 -4.094 5.776 4.057 -0.613 C9 XKK 20 XKK C10 C11 C 0 1 Y N N 9.302 5.068 -3.473 6.523 2.935 -0.595 C10 XKK 21 XKK N2 N6 N 0 1 N N N 11.105 5.710 -1.198 7.113 0.015 -0.470 N2 XKK 22 XKK S1 S1 S 0 1 N N N 5.063 4.618 8.052 -3.297 -3.705 -0.302 S1 XKK 23 XKK O3 O6 O 0 1 N N N 4.259 3.540 7.564 -3.961 -3.858 -1.549 O3 XKK 24 XKK N4 N7 N 0 1 N N N 4.083 5.803 7.340 -3.742 -2.222 0.285 N4 XKK 25 XKK C7 C12 C 0 1 N N N 3.876 7.062 7.684 -3.678 -1.135 -0.509 C7 XKK 26 XKK C11 C13 C 0 1 N N N 4.306 7.431 9.075 -4.082 0.214 0.025 C11 XKK 27 XKK C12 C14 C 0 1 N N N 4.339 8.945 9.172 -3.917 1.268 -1.071 C12 XKK 28 XKK C13 C15 C 0 1 Y N N 3.022 9.662 9.227 -4.321 2.618 -0.536 C13 XKK 29 XKK C14 C16 C 0 1 Y N N 2.330 10.021 10.446 -3.474 3.547 0.214 C14 XKK 30 XKK C15 C17 C 0 1 Y N N 1.197 10.781 10.076 -4.279 4.665 0.497 C15 XKK 31 XKK N16 N8 N 0 1 Y N N 1.219 10.905 8.707 -5.520 4.420 -0.047 N16 XKK 32 XKK C17 C18 C 0 1 Y N N 2.322 10.249 8.209 -5.525 3.198 -0.662 C17 XKK 33 XKK O24 O7 O 0 1 N N N 3.395 7.872 6.924 -3.295 -1.244 -1.655 O24 XKK 34 XKK C25 C19 C 0 1 Y N N 2.558 9.767 11.803 -2.148 3.515 0.650 C25 XKK 35 XKK C26 C20 C 0 1 Y N N 1.673 10.264 12.730 -1.638 4.573 1.349 C26 XKK 36 XKK C27 C21 C 0 1 Y N N 0.554 11.000 12.342 -2.428 5.679 1.631 C27 XKK 37 XKK C28 C22 C 0 1 Y N N 0.293 11.270 11.019 -3.739 5.731 1.211 C28 XKK 38 XKK C16 C23 C 0 1 N N R 7.560 6.140 2.776 2.132 -1.982 -0.110 C16 XKK 39 XKK H1 H1 H 0 1 N N N 5.060 5.150 5.381 -1.203 -2.831 1.189 H1 XKK 40 XKK H2 H2 H 0 1 N N N 6.144 3.718 5.341 -1.145 -4.607 1.087 H2 XKK 41 XKK H3 H3 H 0 1 N N N 8.054 5.458 5.476 0.708 -4.392 -0.610 H3 XKK 42 XKK H4 H4 H 0 1 N N N 5.844 7.301 5.275 0.815 -3.848 2.254 H4 XKK 43 XKK H5 H5 H 0 1 N N N 7.815 7.588 6.443 2.851 -5.058 1.941 H5 XKK 44 XKK H6 H6 H 0 1 N N N 5.690 7.195 3.000 1.829 -1.737 2.049 H6 XKK 45 XKK H7 H7 H 0 1 N N N 6.674 9.274 3.278 3.732 -3.139 2.572 H7 XKK 46 XKK H8 H8 H 0 1 N N N 5.026 5.508 1.706 0.315 0.235 -0.127 H8 XKK 47 XKK H9 H9 H 0 1 N N N 8.019 4.604 -5.151 6.156 5.066 -0.685 H9 XKK 48 XKK H10 H10 H 0 1 N N N 10.282 5.102 -3.926 7.601 2.881 -0.649 H10 XKK 49 XKK H11 H11 H 0 1 N N N 11.538 5.937 -0.326 7.258 -0.943 -0.424 H11 XKK 50 XKK H12 H12 H 0 1 N N N 11.470 4.842 -1.535 7.871 0.617 -0.541 H12 XKK 51 XKK H13 H13 H 0 1 N N N 3.581 5.501 6.530 -4.048 -2.135 1.202 H13 XKK 52 XKK H14 H14 H 0 1 N N N 3.591 7.026 9.806 -5.124 0.182 0.344 H14 XKK 53 XKK H15 H15 H 0 1 N N N 5.307 7.023 9.276 -3.451 0.472 0.875 H15 XKK 54 XKK H16 H16 H 0 1 N N N 4.895 9.205 10.085 -2.875 1.301 -1.390 H16 XKK 55 XKK H17 H17 H 0 1 N N N 4.883 9.320 8.292 -4.549 1.010 -1.921 H17 XKK 56 XKK H18 H18 H 0 1 N N N 0.541 11.395 8.159 -6.277 5.025 -0.003 H18 XKK 57 XKK H19 H19 H 0 1 N N N 2.595 10.204 7.165 -6.374 2.763 -1.169 H19 XKK 58 XKK H20 H20 H 0 1 N N N 3.415 9.190 12.117 -1.527 2.658 0.434 H20 XKK 59 XKK H21 H21 H 0 1 N N N 1.848 10.081 13.780 -0.612 4.547 1.686 H21 XKK 60 XKK H22 H22 H 0 1 N N N -0.124 11.367 13.099 -2.011 6.506 2.185 H22 XKK 61 XKK H23 H23 H 0 1 N N N -0.577 11.838 10.722 -4.346 6.596 1.435 H23 XKK 62 XKK H24 H24 H 0 1 N N N 8.631 6.387 2.821 2.839 -2.512 -0.749 H24 XKK 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XKK C9 C10 DOUB Y N 1 XKK C9 N6 SING Y N 2 XKK C10 N1 SING Y N 3 XKK N6 C6 DOUB Y N 4 XKK N1 C6 SING Y N 5 XKK N1 C2 SING Y N 6 XKK C6 C5 SING Y N 7 XKK N2 C2 SING N N 8 XKK C2 N3 DOUB Y N 9 XKK C5 N7 SING Y N 10 XKK C5 C4 DOUB Y N 11 XKK N7 C8 DOUB Y N 12 XKK N3 C4 SING Y N 13 XKK C4 N9 SING Y N 14 XKK C8 N9 SING Y N 15 XKK N9 C16 SING N N 16 XKK C16 "C2'" SING N N 17 XKK C16 "O4'" SING N N 18 XKK "O2'" "C2'" SING N N 19 XKK "C2'" "C3'" SING N N 20 XKK "O4'" "C4'" SING N N 21 XKK "C3'" "C4'" SING N N 22 XKK "C3'" "O3'" SING N N 23 XKK "C4'" "C5'" SING N N 24 XKK "C5'" "O5'" SING N N 25 XKK O24 C7 DOUB N N 26 XKK "O5'" S1 SING N N 27 XKK N4 C7 SING N N 28 XKK N4 S1 SING N N 29 XKK O3 S1 DOUB N N 30 XKK C7 C11 SING N N 31 XKK S1 O2 DOUB N N 32 XKK C17 N16 SING Y N 33 XKK C17 C13 DOUB Y N 34 XKK N16 C15 SING Y N 35 XKK C11 C12 SING N N 36 XKK C12 C13 SING N N 37 XKK C13 C14 SING Y N 38 XKK C15 C14 DOUB Y N 39 XKK C15 C28 SING Y N 40 XKK C14 C25 SING Y N 41 XKK C28 C27 DOUB Y N 42 XKK C25 C26 DOUB Y N 43 XKK C27 C26 SING Y N 44 XKK "C5'" H1 SING N N 45 XKK "C5'" H2 SING N N 46 XKK "C4'" H3 SING N N 47 XKK "C3'" H4 SING N N 48 XKK "O3'" H5 SING N N 49 XKK "C2'" H6 SING N N 50 XKK "O2'" H7 SING N N 51 XKK C8 H8 SING N N 52 XKK C9 H9 SING N N 53 XKK C10 H10 SING N N 54 XKK N2 H11 SING N N 55 XKK N2 H12 SING N N 56 XKK N4 H13 SING N N 57 XKK C11 H14 SING N N 58 XKK C11 H15 SING N N 59 XKK C12 H16 SING N N 60 XKK C12 H17 SING N N 61 XKK N16 H18 SING N N 62 XKK C17 H19 SING N N 63 XKK C25 H20 SING N N 64 XKK C26 H21 SING N N 65 XKK C27 H22 SING N N 66 XKK C28 H23 SING N N 67 XKK C16 H24 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XKK InChI InChI 1.06 "InChI=1S/C23H24N8O7S/c24-23-28-21-17(20-25-7-8-30(20)23)27-11-31(21)22-19(34)18(33)15(38-22)10-37-39(35,36)29-16(32)6-5-12-9-26-14-4-2-1-3-13(12)14/h1-4,7-9,11,15,18-19,22,26,33-34H,5-6,10H2,(H2,24,28)(H,29,32)/t15-,18-,19-,22-/m1/s1" XKK InChIKey InChI 1.06 UXQPTDCOLAEKOF-CIVUBGFFSA-N XKK SMILES_CANONICAL CACTVS 3.385 "Nc1nc2n(cnc2c3nccn13)[C@@H]4O[C@H](CO[S](=O)(=O)NC(=O)CCc5c[nH]c6ccccc56)[C@@H](O)[C@H]4O" XKK SMILES CACTVS 3.385 "Nc1nc2n(cnc2c3nccn13)[CH]4O[CH](CO[S](=O)(=O)NC(=O)CCc5c[nH]c6ccccc56)[CH](O)[CH]4O" XKK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCC(=O)NS(=O)(=O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4nc(n6c5ncc6)N)O)O" XKK SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCC(=O)NS(=O)(=O)OCC3C(C(C(O3)n4cnc5c4nc(n6c5ncc6)N)O)O" # _pdbx_chem_comp_identifier.comp_id XKK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(5-azanylimidazo[2,1-f]purin-3-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[3-(1~{H}-indol-3-yl)propanoyl]sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XKK "Create component" 2023-06-07 PDBE XKK "Initial release" 2023-06-14 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XKK _pdbx_chem_comp_synonyms.name "[(2~{R},3~{S},4~{R},5~{R})-5-(5-azanylimidazo[2,1-f]purin-3-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[3-(1~{H}-indol-3-yl)propanoyl]sulfamate" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #