data_XKN # _chem_comp.id XKN _chem_comp.name "3-ethynyl-5-{[(3R)-4-{1-[(2-methoxyphenyl)methyl]-1H-benzimidazole-5-carbonyl}-3-methylpiperazin-1-yl]methyl}benzene-1-sulfonyl fluoride" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H29 F N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2023-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.639 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XKN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F93 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XKN C1 C1 C 0 1 N N N 32.144 7.753 26.855 -4.074 3.256 -3.870 C1 XKN 1 XKN C10 C2 C 0 1 N N R 25.753 3.650 25.530 -1.456 -3.414 1.122 C10 XKN 2 XKN C11 C3 C 0 1 N N N 26.506 4.762 24.827 -0.932 -4.843 1.280 C11 XKN 3 XKN C12 C4 C 0 1 N N N 24.067 2.315 24.473 0.876 -2.995 0.490 C12 XKN 4 XKN C13 C5 C 0 1 Y N N 23.557 1.318 23.471 1.954 -2.071 0.085 C13 XKN 5 XKN C14 C6 C 0 1 Y N N 23.028 0.096 23.886 3.079 -2.562 -0.571 C14 XKN 6 XKN C15 C7 C 0 1 Y N N 22.481 -0.762 22.934 4.091 -1.682 -0.951 C15 XKN 7 XKN C16 C8 C 0 1 Y N N 21.548 -2.358 21.867 5.870 -0.690 -1.706 C16 XKN 8 XKN C17 C9 C 0 1 N N N 21.476 -1.500 19.483 5.426 1.716 -1.093 C17 XKN 9 XKN C18 C10 C 0 1 Y N N 22.574 -1.973 18.559 6.071 2.027 0.233 C18 XKN 10 XKN C19 C11 C 0 1 Y N N 22.836 -3.340 18.465 7.437 1.845 0.401 C19 XKN 11 XKN C2 C12 C 0 1 N N N 31.504 6.819 27.182 -4.423 2.519 -3.025 C2 XKN 12 XKN C20 C13 C 0 1 N N N 22.143 -5.524 19.108 9.592 1.223 -0.385 C20 XKN 13 XKN C21 C14 C 0 1 Y N N 23.836 -3.818 17.635 8.027 2.133 1.623 C21 XKN 14 XKN C22 C15 C 0 1 Y N N 24.575 -2.933 16.878 7.255 2.600 2.669 C22 XKN 15 XKN C23 C16 C 0 1 Y N N 24.318 -1.584 16.937 5.895 2.780 2.499 C23 XKN 16 XKN C24 C17 C 0 1 Y N N 23.316 -1.104 17.763 5.305 2.499 1.280 C24 XKN 17 XKN C25 C18 C 0 1 Y N N 22.418 -0.371 21.594 3.961 -0.311 -0.665 C25 XKN 18 XKN C26 C19 C 0 1 Y N N 22.902 0.859 21.161 2.831 0.162 -0.008 C26 XKN 19 XKN C27 C20 C 0 1 Y N N 23.451 1.690 22.123 1.839 -0.701 0.356 C27 XKN 20 XKN C28 C21 C 0 1 N N N 26.498 1.884 24.001 -0.747 -1.183 0.177 C28 XKN 21 XKN C29 C22 C 0 1 N N N 27.247 1.218 25.136 -1.947 -1.259 -0.772 C29 XKN 22 XKN C3 C23 C 0 1 Y N N 30.741 5.669 27.574 -4.847 1.620 -1.994 C3 XKN 23 XKN C30 C24 C 0 1 Y N N 30.187 4.855 26.591 -4.365 0.311 -1.963 C30 XKN 24 XKN C4 C25 C 0 1 Y N N 30.558 5.331 28.911 -5.741 2.051 -1.013 C4 XKN 25 XKN C5 C26 C 0 1 Y N N 29.820 4.206 29.246 -6.147 1.180 -0.023 C5 XKN 26 XKN C6 C27 C 0 1 Y N N 29.269 3.412 28.249 -5.669 -0.118 -0.001 C6 XKN 27 XKN C7 C28 C 0 1 Y N N 29.445 3.734 26.911 -4.778 -0.550 -0.967 C7 XKN 28 XKN C8 C29 C 0 1 N N N 28.849 2.912 25.795 -4.258 -1.964 -0.932 C8 XKN 29 XKN C9 C30 C 0 1 N N N 26.550 3.016 26.646 -2.629 -3.402 0.135 C9 XKN 30 XKN N1 N1 N 0 1 N N N 27.656 2.159 26.190 -3.030 -2.014 -0.127 N1 XKN 31 XKN N2 N2 N 0 1 N N N 25.367 2.579 24.597 -0.391 -2.549 0.592 N2 XKN 32 XKN N3 N3 N 0 1 Y N N 21.920 -2.026 23.079 5.281 -1.843 -1.587 N3 XKN 33 XKN N4 N4 N 0 1 Y N N 21.816 -1.422 20.914 5.102 0.288 -1.155 N4 XKN 34 XKN O1 O1 O 0 1 N N N 30.407 4.712 31.699 -6.848 3.021 1.607 O1 XKN 35 XKN O2 O2 O 0 1 N N N 29.991 2.448 31.097 -8.578 1.449 0.721 O2 XKN 36 XKN O3 O3 O 0 1 N N N 22.058 -4.111 19.274 8.194 1.386 -0.630 O3 XKN 37 XKN O4 O4 O 0 1 N N N 23.245 2.938 25.148 1.132 -4.159 0.732 O4 XKN 38 XKN S1 S1 S 0 1 N N N 29.553 3.817 30.947 -7.275 1.723 1.217 S1 XKN 39 XKN F1 F1 F 0 1 N Y N 28.015 4.115 31.250 -7.067 0.772 2.500 F1 XKN 40 XKN H1 H1 H 0 1 N N N 32.720 8.593 26.561 -3.763 3.914 -4.626 H1 XKN 41 XKN H2 H2 H 0 1 N N N 24.839 4.081 25.966 -1.788 -3.037 2.089 H2 XKN 42 XKN H3 H3 H 0 1 N N N 26.776 5.540 25.556 -0.512 -5.183 0.333 H3 XKN 43 XKN H4 H4 H 0 1 N N N 27.420 4.354 24.371 -0.159 -4.863 2.048 H4 XKN 44 XKN H5 H5 H 0 1 N N N 25.869 5.198 24.044 -1.751 -5.501 1.571 H5 XKN 45 XKN H6 H6 H 0 1 N N N 23.042 -0.181 24.930 3.167 -3.617 -0.785 H6 XKN 46 XKN H7 H7 H 0 1 N N N 21.067 -3.299 21.642 6.831 -0.532 -2.173 H7 XKN 47 XKN H8 H8 H 0 1 N N N 21.172 -0.495 19.155 4.513 2.301 -1.200 H8 XKN 48 XKN H9 H9 H 0 1 N N N 20.628 -2.192 19.377 6.115 1.967 -1.900 H9 XKN 49 XKN H10 H10 H 0 1 N N N 21.467 -6.019 19.820 10.027 2.183 -0.108 H10 XKN 50 XKN H11 H11 H 0 1 N N N 21.852 -5.791 18.081 9.738 0.510 0.427 H11 XKN 51 XKN H12 H12 H 0 1 N N N 23.176 -5.853 19.294 10.078 0.851 -1.287 H12 XKN 52 XKN H13 H13 H 0 1 N N N 24.036 -4.878 17.581 9.089 1.992 1.756 H13 XKN 53 XKN H14 H14 H 0 1 N N N 25.360 -3.302 16.235 7.713 2.820 3.622 H14 XKN 54 XKN H15 H15 H 0 1 N N N 24.898 -0.898 16.338 5.293 3.145 3.318 H15 XKN 55 XKN H16 H16 H 0 1 N N N 23.108 -0.045 17.790 4.242 2.641 1.150 H16 XKN 56 XKN H17 H17 H 0 1 N N N 22.852 1.152 20.123 2.735 1.215 0.209 H17 XKN 57 XKN H18 H18 H 0 1 N N N 23.812 2.663 21.823 0.963 -0.328 0.866 H18 XKN 58 XKN H19 H19 H 0 1 N N N 26.144 1.128 23.285 0.099 -0.725 -0.337 H19 XKN 59 XKN H20 H20 H 0 1 N N N 27.153 2.600 23.483 -1.010 -0.591 1.054 H20 XKN 60 XKN H21 H21 H 0 1 N N N 26.596 0.453 25.584 -2.293 -0.252 -1.002 H21 XKN 61 XKN H22 H22 H 0 1 N N N 28.148 0.738 24.726 -1.651 -1.762 -1.693 H22 XKN 62 XKN H23 H23 H 0 1 N N N 30.341 5.106 25.552 -3.670 -0.027 -2.717 H23 XKN 63 XKN H24 H24 H 0 1 N N N 30.990 5.944 29.688 -6.114 3.065 -1.029 H24 XKN 64 XKN H25 H25 H 0 1 N N N 28.698 2.536 28.518 -5.990 -0.796 0.776 H25 XKN 65 XKN H26 H26 H 0 1 N N N 29.610 2.199 25.445 -5.010 -2.616 -0.489 H26 XKN 66 XKN H27 H27 H 0 1 N N N 28.575 3.589 24.973 -4.041 -2.296 -1.947 H27 XKN 67 XKN H28 H28 H 0 1 N N N 26.971 3.820 27.268 -2.323 -3.875 -0.799 H28 XKN 68 XKN H29 H29 H 0 1 N N N 25.867 2.403 27.252 -3.469 -3.950 0.562 H29 XKN 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XKN C22 C23 DOUB Y N 1 XKN C22 C21 SING Y N 2 XKN C23 C24 SING Y N 3 XKN C21 C19 DOUB Y N 4 XKN C24 C18 DOUB Y N 5 XKN C19 C18 SING Y N 6 XKN C19 O3 SING N N 7 XKN C18 C17 SING N N 8 XKN C20 O3 SING N N 9 XKN C17 N4 SING N N 10 XKN N4 C25 SING Y N 11 XKN N4 C16 SING Y N 12 XKN C26 C25 DOUB Y N 13 XKN C26 C27 SING Y N 14 XKN C25 C15 SING Y N 15 XKN C16 N3 DOUB Y N 16 XKN C27 C13 DOUB Y N 17 XKN C15 N3 SING Y N 18 XKN C15 C14 DOUB Y N 19 XKN C13 C14 SING Y N 20 XKN C13 C12 SING N N 21 XKN C28 N2 SING N N 22 XKN C28 C29 SING N N 23 XKN C12 N2 SING N N 24 XKN C12 O4 DOUB N N 25 XKN N2 C10 SING N N 26 XKN C11 C10 SING N N 27 XKN C29 N1 SING N N 28 XKN C10 C9 SING N N 29 XKN C8 N1 SING N N 30 XKN C8 C7 SING N N 31 XKN N1 C9 SING N N 32 XKN C30 C7 DOUB Y N 33 XKN C30 C3 SING Y N 34 XKN C1 C2 TRIP N N 35 XKN C7 C6 SING Y N 36 XKN C2 C3 SING N N 37 XKN C3 C4 DOUB Y N 38 XKN C6 C5 DOUB Y N 39 XKN C4 C5 SING Y N 40 XKN C5 S1 SING N N 41 XKN S1 O2 DOUB N N 42 XKN S1 O1 DOUB N N 43 XKN S1 F1 SING N N 44 XKN C1 H1 SING N N 45 XKN C10 H2 SING N N 46 XKN C11 H3 SING N N 47 XKN C11 H4 SING N N 48 XKN C11 H5 SING N N 49 XKN C14 H6 SING N N 50 XKN C16 H7 SING N N 51 XKN C17 H8 SING N N 52 XKN C17 H9 SING N N 53 XKN C20 H10 SING N N 54 XKN C20 H11 SING N N 55 XKN C20 H12 SING N N 56 XKN C21 H13 SING N N 57 XKN C22 H14 SING N N 58 XKN C23 H15 SING N N 59 XKN C24 H16 SING N N 60 XKN C26 H17 SING N N 61 XKN C27 H18 SING N N 62 XKN C28 H19 SING N N 63 XKN C28 H20 SING N N 64 XKN C29 H21 SING N N 65 XKN C29 H22 SING N N 66 XKN C30 H23 SING N N 67 XKN C4 H24 SING N N 68 XKN C6 H25 SING N N 69 XKN C8 H26 SING N N 70 XKN C8 H27 SING N N 71 XKN C9 H28 SING N N 72 XKN C9 H29 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XKN SMILES ACDLabs 12.01 "COc1ccccc1Cn1cnc2cc(ccc12)C(=O)N1CCN(Cc2cc(cc(C#C)c2)S(F)(=O)=O)CC1C" XKN InChI InChI 1.06 "InChI=1S/C30H29FN4O4S/c1-4-22-13-23(15-26(14-22)40(31,37)38)18-33-11-12-35(21(2)17-33)30(36)24-9-10-28-27(16-24)32-20-34(28)19-25-7-5-6-8-29(25)39-3/h1,5-10,13-16,20-21H,11-12,17-19H2,2-3H3/t21-/m1/s1" XKN InChIKey InChI 1.06 ADWDKRWBNOJKEH-OAQYLSRUSA-N XKN SMILES_CANONICAL CACTVS 3.385 "COc1ccccc1Cn2cnc3cc(ccc23)C(=O)N4CCN(C[C@H]4C)Cc5cc(cc(c5)[S](F)(=O)=O)C#C" XKN SMILES CACTVS 3.385 "COc1ccccc1Cn2cnc3cc(ccc23)C(=O)N4CCN(C[CH]4C)Cc5cc(cc(c5)[S](F)(=O)=O)C#C" XKN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(CCN1C(=O)c2ccc3c(c2)ncn3Cc4ccccc4OC)Cc5cc(cc(c5)S(=O)(=O)F)C#C" XKN SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1C(=O)c2ccc3c(c2)ncn3Cc4ccccc4OC)Cc5cc(cc(c5)S(=O)(=O)F)C#C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XKN "SYSTEMATIC NAME" ACDLabs 12.01 "3-ethynyl-5-{[(3R)-4-{1-[(2-methoxyphenyl)methyl]-1H-benzimidazole-5-carbonyl}-3-methylpiperazin-1-yl]methyl}benzene-1-sulfonyl fluoride" XKN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-ethynyl-5-[[(3~{R})-4-[1-[(2-methoxyphenyl)methyl]benzimidazol-5-yl]carbonyl-3-methyl-piperazin-1-yl]methyl]benzenesulfonyl fluoride" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XKN "Create component" 2022-11-23 RCSB XKN "Initial release" 2023-05-31 RCSB #