data_XKQ # _chem_comp.id XKQ _chem_comp.name "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S)-6,6-difluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H40 F2 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XKQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UTE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XKQ N1 N1 N 0 1 N N N N N N 7.672 10.441 24.157 -1.743 -0.935 0.807 N1 XKQ 1 XKQ N3 N2 N 0 1 N N N N N N 9.702 16.569 20.231 3.806 -0.364 -3.664 N3 XKQ 2 XKQ C4 C1 C 0 1 N N N N N N 10.680 8.684 23.387 -2.851 0.946 -2.490 C4 XKQ 3 XKQ C5 C2 C 0 1 N N N N N N 9.410 7.221 21.823 -3.274 -1.425 -1.825 C5 XKQ 4 XKQ C6 C3 C 0 1 N N N N N N 6.651 6.642 25.078 -5.267 2.133 0.193 C6 XKQ 5 XKQ C7 C4 C 0 1 N N N N N N 4.973 5.232 25.931 -7.042 3.691 0.540 C7 XKQ 6 XKQ C8 C5 C 0 1 N N S N N N 7.224 11.697 23.556 -0.370 -1.311 1.188 C8 XKQ 7 XKQ C10 C6 C 0 1 N N R N N N 7.269 11.822 26.014 -1.717 -3.312 0.742 C10 XKQ 8 XKQ C13 C7 C 0 1 N N N N N N 4.976 12.575 25.635 -0.802 -4.757 2.523 C13 XKQ 9 XKQ C15 C8 C 0 1 N N N N N N 8.185 12.157 22.454 0.615 -0.700 0.226 C15 XKQ 10 XKQ C17 C9 C 0 1 N N N N N N 8.101 12.682 18.978 4.055 0.582 0.413 C17 XKQ 11 XKQ C20 C10 C 0 1 N N N N N N 9.230 9.266 17.468 4.247 3.362 3.071 C20 XKQ 12 XKQ C21 C11 C 0 1 N N R N N N 7.979 14.857 20.346 3.372 -1.069 -1.333 C21 XKQ 13 XKQ C22 C12 C 0 1 N N N N N N 8.938 15.725 19.542 4.238 -0.430 -2.389 C22 XKQ 14 XKQ O5 O1 O 0 1 N N N N N N 9.405 12.000 22.562 0.240 -0.309 -0.859 O5 XKQ 15 XKQ N2 N3 N 0 1 N N N N N N 7.604 12.663 21.364 1.913 -0.588 0.570 N2 XKQ 16 XKQ C16 C13 C 0 1 N N S N N N 8.350 13.360 20.325 2.871 0.006 -0.366 C16 XKQ 17 XKQ O4 O2 O 0 1 N N N N N N 8.991 15.607 18.321 5.322 0.024 -2.091 O4 XKQ 18 XKQ C23 C14 C 0 1 N N N N N N 10.830 17.260 19.633 4.692 0.151 -4.711 C23 XKQ 19 XKQ O3 O3 O 0 1 N N N N N N 7.919 15.299 21.695 2.256 -1.708 -1.955 O3 XKQ 20 XKQ C18 C15 C 0 1 N N N N N N 8.793 11.317 18.872 3.559 1.684 1.353 C18 XKQ 21 XKQ C19 C16 C 0 1 N N N N N N 8.358 10.505 17.683 4.743 2.260 2.132 C19 XKQ 22 XKQ F1 F1 F 0 1 N N N N N N 7.058 10.102 17.878 5.674 2.796 1.236 F1 XKQ 23 XKQ F F2 F 0 1 N N N N N N 8.359 11.282 16.600 5.347 1.245 2.881 F XKQ 24 XKQ C9 C17 C 0 1 N N S N N N 7.211 12.689 24.743 -0.284 -2.847 1.122 C9 XKQ 25 XKQ C14 C18 C 0 1 N N N N N N 5.920 13.496 24.900 -0.074 -3.392 2.555 C14 XKQ 26 XKQ C12 C19 C 0 1 N N N N N N 5.805 11.545 26.396 -2.052 -4.499 1.657 C12 XKQ 27 XKQ C11 C20 C 0 1 N N N N N N 8.037 10.584 25.575 -2.592 -2.100 1.143 C11 XKQ 28 XKQ C C21 C 0 1 N N N N N N 7.731 9.333 23.391 -2.145 0.234 0.269 C XKQ 29 XKQ O O4 O 0 1 N N N N N N 7.352 9.340 22.229 -1.353 1.141 0.130 O XKQ 30 XKQ C1 C22 C 0 1 N N S N N N 8.318 8.044 23.983 -3.579 0.413 -0.160 C1 XKQ 31 XKQ C2 C23 C 0 1 N N N N N N 9.632 7.573 23.296 -3.722 0.025 -1.633 C2 XKQ 32 XKQ C3 C24 C 0 1 N N N N N N 10.158 6.333 24.024 -5.185 0.167 -2.058 C3 XKQ 33 XKQ N N4 N 0 1 N N N N N N 7.277 7.032 23.953 -3.970 1.813 0.017 N XKQ 34 XKQ O2 O5 O 0 1 N N N N N N 6.932 7.012 26.200 -6.112 1.260 0.205 O2 XKQ 35 XKQ O1 O6 O 0 1 N N N N N N 5.686 5.768 24.792 -5.627 3.420 0.355 O1 XKQ 36 XKQ H36 H1 H 0 1 N N N N N N 9.492 16.733 21.195 2.909 -0.657 -3.889 H36 XKQ 37 XKQ H9 H2 H 0 1 N N N N N N 10.848 8.945 24.442 -2.954 0.670 -3.540 H9 XKQ 38 XKQ H10 H3 H 0 1 N N N N N N 11.623 8.335 22.941 -3.171 1.979 -2.353 H10 XKQ 39 XKQ H8 H4 H 0 1 N N N N N N 10.323 9.570 22.842 -1.809 0.845 -2.188 H8 XKQ 40 XKQ H13 H5 H 0 1 N N N N N N 8.658 6.422 21.746 -2.257 -1.543 -1.451 H13 XKQ 41 XKQ H11 H6 H 0 1 N N N N N N 9.056 8.111 21.283 -3.942 -2.088 -1.276 H11 XKQ 42 XKQ H12 H7 H 0 1 N N N N N N 10.357 6.876 21.382 -3.303 -1.677 -2.885 H12 XKQ 43 XKQ H17 H8 H 0 1 N N N N N N 4.204 4.526 25.584 -7.596 3.340 -0.331 H17 XKQ 44 XKQ H16 H9 H 0 1 N N N N N N 5.679 4.709 26.592 -7.398 3.173 1.430 H16 XKQ 45 XKQ H15 H10 H 0 1 N N N N N N 4.494 6.054 26.483 -7.194 4.764 0.659 H15 XKQ 46 XKQ H1 H11 H 0 1 N N N N N N 6.208 11.595 23.147 -0.160 -0.972 2.203 H1 XKQ 47 XKQ H3 H12 H 0 1 N N N N N N 7.794 12.348 26.825 -1.806 -3.566 -0.314 H3 XKQ 48 XKQ H23 H13 H 0 1 N N N N N N 4.365 13.156 26.342 -0.169 -5.516 2.063 H23 XKQ 49 XKQ H22 H14 H 0 1 N N N N N N 4.319 12.065 24.915 -1.091 -5.061 3.529 H22 XKQ 50 XKQ H27 H15 H 0 1 N N N N N N 8.483 13.334 18.179 4.526 -0.208 0.997 H27 XKQ 51 XKQ H28 H16 H 0 1 N N N N N N 7.018 12.540 18.849 4.780 1.000 -0.285 H28 XKQ 52 XKQ H31 H17 H 0 1 N N N N N N 9.212 8.643 18.374 3.776 4.153 2.488 H31 XKQ 53 XKQ H32 H18 H 0 1 N N N N N N 8.841 8.687 16.617 3.521 2.944 3.769 H32 XKQ 54 XKQ H33 H19 H 0 1 N N N N N N 10.264 9.577 17.257 5.090 3.773 3.626 H33 XKQ 55 XKQ H34 H20 H 0 1 N N N N N N 6.981 14.955 19.893 3.955 -1.808 -0.784 H34 XKQ 56 XKQ H26 H21 H 0 1 N N N N N N 6.615 12.559 21.256 2.214 -0.901 1.438 H26 XKQ 57 XKQ H4 H22 H 0 1 N N N N N N 9.424 13.280 20.548 2.384 0.802 -0.928 H4 XKQ 58 XKQ H39 H23 H 0 1 N N N N N N 11.310 17.901 20.387 4.173 0.128 -5.670 H39 XKQ 59 XKQ H38 H24 H 0 1 N N N N N N 11.557 16.522 19.262 4.976 1.177 -4.475 H38 XKQ 60 XKQ H37 H25 H 0 1 N N N N N N 10.478 17.880 18.796 5.587 -0.469 -4.768 H37 XKQ 61 XKQ H35 H26 H 0 1 N N N N N N 7.318 14.748 22.183 1.655 -2.141 -1.334 H35 XKQ 62 XKQ H29 H27 H 0 1 N N N N N N 8.570 10.744 19.784 3.088 2.474 0.769 H29 XKQ 63 XKQ H30 H28 H 0 1 N N N N N N 9.878 11.483 18.800 2.833 1.266 2.051 H30 XKQ 64 XKQ H2 H29 H 0 1 N N N N N N 8.083 13.358 24.693 0.480 -3.194 0.426 H2 XKQ 65 XKQ H25 H30 H 0 1 N N N N N N 6.103 14.410 25.484 -0.531 -2.729 3.289 H25 XKQ 66 XKQ H24 H31 H 0 1 N N N N N N 5.510 13.766 23.916 0.987 -3.526 2.764 H24 XKQ 67 XKQ H20 H32 H 0 1 N N N N N N 5.663 11.664 27.480 -2.902 -4.252 2.293 H20 XKQ 68 XKQ H21 H33 H 0 1 N N N N N N 5.517 10.526 26.098 -2.278 -5.380 1.057 H21 XKQ 69 XKQ H18 H34 H 0 1 N N N N N N 7.725 9.702 26.153 -2.810 -2.121 2.211 H18 XKQ 70 XKQ H19 H35 H 0 1 N N N N N N 9.121 10.732 25.689 -3.514 -2.084 0.562 H19 XKQ 71 XKQ H H36 H 0 1 N N N N N N 8.564 8.252 25.035 -4.222 -0.224 0.447 H XKQ 72 XKQ H7 H37 H 0 1 N N N N N N 10.322 6.572 25.085 -5.806 -0.489 -1.447 H7 XKQ 73 XKQ H6 H38 H 0 1 N N N N N N 9.422 5.520 23.941 -5.505 1.200 -1.921 H6 XKQ 74 XKQ H5 H39 H 0 1 N N N N N N 11.108 6.016 23.569 -5.288 -0.109 -3.107 H5 XKQ 75 XKQ H14 H40 H 0 1 N N N N N N 7.021 6.617 23.080 -3.296 2.510 0.007 H14 XKQ 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XKQ F C19 SING N N 1 XKQ C20 C19 SING N N 2 XKQ C19 F1 SING N N 3 XKQ C19 C18 SING N N 4 XKQ O4 C22 DOUB N N 5 XKQ C18 C17 SING N N 6 XKQ C17 C16 SING N N 7 XKQ C22 N3 SING N N 8 XKQ C22 C21 SING N N 9 XKQ C23 N3 SING N N 10 XKQ C16 C21 SING N N 11 XKQ C16 N2 SING N N 12 XKQ C21 O3 SING N N 13 XKQ N2 C15 SING N N 14 XKQ C5 C2 SING N N 15 XKQ O C DOUB N N 16 XKQ C15 O5 DOUB N N 17 XKQ C15 C8 SING N N 18 XKQ C2 C4 SING N N 19 XKQ C2 C1 SING N N 20 XKQ C2 C3 SING N N 21 XKQ C C1 SING N N 22 XKQ C N1 SING N N 23 XKQ C8 N1 SING N N 24 XKQ C8 C9 SING N N 25 XKQ N C1 SING N N 26 XKQ N C6 SING N N 27 XKQ N1 C11 SING N N 28 XKQ C9 C14 SING N N 29 XKQ C9 C10 SING N N 30 XKQ O1 C6 SING N N 31 XKQ O1 C7 SING N N 32 XKQ C14 C13 SING N N 33 XKQ C6 O2 DOUB N N 34 XKQ C11 C10 SING N N 35 XKQ C13 C12 SING N N 36 XKQ C10 C12 SING N N 37 XKQ N3 H36 SING N N 38 XKQ C4 H9 SING N N 39 XKQ C4 H10 SING N N 40 XKQ C4 H8 SING N N 41 XKQ C5 H13 SING N N 42 XKQ C5 H11 SING N N 43 XKQ C5 H12 SING N N 44 XKQ C7 H17 SING N N 45 XKQ C7 H16 SING N N 46 XKQ C7 H15 SING N N 47 XKQ C8 H1 SING N N 48 XKQ C10 H3 SING N N 49 XKQ C13 H23 SING N N 50 XKQ C13 H22 SING N N 51 XKQ C17 H27 SING N N 52 XKQ C17 H28 SING N N 53 XKQ C20 H31 SING N N 54 XKQ C20 H32 SING N N 55 XKQ C20 H33 SING N N 56 XKQ C21 H34 SING N N 57 XKQ N2 H26 SING N N 58 XKQ C16 H4 SING N N 59 XKQ C23 H39 SING N N 60 XKQ C23 H38 SING N N 61 XKQ C23 H37 SING N N 62 XKQ O3 H35 SING N N 63 XKQ C18 H29 SING N N 64 XKQ C18 H30 SING N N 65 XKQ C9 H2 SING N N 66 XKQ C14 H25 SING N N 67 XKQ C14 H24 SING N N 68 XKQ C12 H20 SING N N 69 XKQ C12 H21 SING N N 70 XKQ C11 H18 SING N N 71 XKQ C11 H19 SING N N 72 XKQ C1 H SING N N 73 XKQ C3 H7 SING N N 74 XKQ C3 H6 SING N N 75 XKQ C3 H5 SING N N 76 XKQ N H14 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XKQ SMILES ACDLabs 12.01 "CNC(=O)C(O)C(CCC(C)(F)F)NC(=O)C1C2CCCC2CN1C(=O)C(NC(=O)OC)C(C)(C)C" XKQ InChI InChI 1.06 "InChI=1S/C24H40F2N4O6/c1-23(2,3)18(29-22(35)36-6)21(34)30-12-13-8-7-9-14(13)16(30)19(32)28-15(10-11-24(4,25)26)17(31)20(33)27-5/h13-18,31H,7-12H2,1-6H3,(H,27,33)(H,28,32)(H,29,35)/t13-,14-,15-,16-,17+,18+/m0/s1" XKQ InChIKey InChI 1.06 WQJQYHZGBBCHOT-UXJCHEOYSA-N XKQ SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@H](CCC(C)(F)F)NC(=O)[C@@H]1[C@H]2CCC[C@H]2CN1C(=O)[C@@H](NC(=O)OC)C(C)(C)C" XKQ SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](CCC(C)(F)F)NC(=O)[CH]1[CH]2CCC[CH]2CN1C(=O)[CH](NC(=O)OC)C(C)(C)C" XKQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[C@@H](C(=O)N1C[C@@H]2CCC[C@@H]2[C@H]1C(=O)N[C@@H](CCC(C)(F)F)[C@H](C(=O)NC)O)NC(=O)OC" XKQ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)N1CC2CCCC2C1C(=O)NC(CCC(C)(F)F)C(C(=O)NC)O)NC(=O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XKQ "SYSTEMATIC NAME" ACDLabs 12.01 "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S)-6,6-difluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate (non-preferred name)" XKQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl ~{N}-[(2~{S})-1-[(3~{S},3~{a}~{S},6~{a}~{R})-3-[[(2~{R},3~{S})-6,6-bis(fluoranyl)-1-(methylamino)-2-oxidanyl-1-oxidanylidene-heptan-3-yl]carbamoyl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrol-2-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XKQ "Create component" 2023-11-03 RCSB XKQ "Initial release" 2024-03-06 RCSB XKQ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XKQ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C21 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #