data_XL7
#
_chem_comp.id XL7
_chem_comp.name "N-[3-chloro-2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-5-fluorophenyl]propanamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H20 Cl3 F N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-11-05
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 529.776
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XL7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6BIP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XL7 C1 C1 C 0 1 Y N N N N N 3.920 -22.002 6.526 -6.286 -0.827 -0.039 C1 XL7 1
XL7 C2 C2 C 0 1 Y N N N N N 4.603 -20.784 6.512 -4.995 -0.855 0.472 C2 XL7 2
XL7 C3 C3 C 0 1 Y N N N N N 4.169 -19.688 7.260 -4.202 0.276 0.411 C3 XL7 3
XL7 C4 C4 C 0 1 Y N N N N N 3.028 -19.855 8.032 -4.692 1.437 -0.158 C4 XL7 4
XL7 C5 C5 C 0 1 Y N N N N N 2.317 -21.052 8.038 -5.982 1.469 -0.670 C5 XL7 5
XL7 C6 C6 C 0 1 Y N N N N N 2.753 -22.116 7.260 -6.779 0.336 -0.610 C6 XL7 6
XL7 O1 O1 O 0 1 N N N N N N 4.382 -23.024 5.748 -7.064 -1.940 0.017 O1 XL7 7
XL7 O2 O2 O 0 1 N N N N N N 1.213 -21.097 8.843 -6.463 2.610 -1.230 O2 XL7 8
XL7 C7 C7 C 0 1 N N N N N N 4.341 -24.358 6.257 -8.379 -1.841 -0.533 C7 XL7 9
XL7 C8 C8 C 0 1 N N N N N N 0.414 -22.284 8.823 -7.799 2.571 -1.736 C8 XL7 10
XL7 C9 C9 C 0 1 N N N N N N 4.957 -18.402 7.277 -2.801 0.243 0.967 C9 XL7 11
XL7 O3 O3 O 0 1 N N N N N N 6.172 -18.635 8.019 -1.891 -0.160 -0.059 O3 XL7 12
XL7 C10 C10 C 0 1 Y N N N N N 7.267 -17.819 7.822 -0.576 -0.241 0.279 C10 XL7 13
XL7 C11 C11 C 0 1 Y N N N N N 7.190 -16.505 7.397 -0.154 0.052 1.571 C11 XL7 14
XL7 N1 N1 N 0 1 Y N N N N N 8.289 -15.768 7.223 1.132 -0.038 1.865 N1 XL7 15
XL7 C12 C12 C 0 1 Y N N N N N 9.471 -16.368 7.476 2.013 -0.402 0.945 C12 XL7 16
XL7 N2 N2 N 0 1 Y N N N N N 9.626 -17.639 7.894 1.647 -0.688 -0.295 N2 XL7 17
XL7 C13 C13 C 0 1 Y N N N N N 8.512 -18.357 8.062 0.377 -0.625 -0.658 C13 XL7 18
XL7 CL1 CL1 CL 0 0 N N N N N N 6.019 -20.605 5.529 -4.377 -2.311 1.188 CL1 XL7 19
XL7 CL2 CL2 CL 0 0 N N N N N N 2.471 -18.561 9.042 -3.694 2.855 -0.232 CL2 XL7 20
XL7 N3 N3 N 0 1 N N N N N N 10.608 -15.655 7.258 3.354 -0.485 1.290 N3 XL7 21
XL7 C14 C14 C 0 1 Y N N N N N 10.736 -14.323 6.780 4.312 -0.787 0.312 C14 XL7 22
XL7 C15 C15 C 0 1 Y N N N N N 11.263 -13.351 7.640 5.233 0.181 -0.086 C15 XL7 23
XL7 C16 C16 C 0 1 Y N N N N N 11.363 -12.025 7.185 6.179 -0.124 -1.054 C16 XL7 24
XL7 C17 C17 C 0 1 Y N N N N N 10.971 -11.728 5.899 6.207 -1.386 -1.622 C17 XL7 25
XL7 C18 C18 C 0 1 Y N N N N N 10.464 -12.675 5.035 5.292 -2.347 -1.226 C18 XL7 26
XL7 C19 C19 C 0 1 Y N N N N N 10.350 -13.981 5.481 4.349 -2.052 -0.257 C19 XL7 27
XL7 CL3 CL3 CL 0 0 N N N N N N 9.745 -15.193 4.390 3.204 -3.260 0.235 CL3 XL7 28
XL7 F1 F1 F 0 1 N N N N N N 11.096 -10.440 5.468 7.129 -1.681 -2.564 F1 XL7 29
XL7 N4 N4 N 0 1 N N N N N N 11.627 -13.739 8.947 5.203 1.458 0.489 N4 XL7 30
XL7 C20 C20 C 0 1 N N N N N N 11.661 -12.979 10.061 6.290 2.252 0.423 C20 XL7 31
XL7 C21 C21 C 0 1 N N N N N N 12.087 -13.693 11.288 6.221 3.667 0.938 C21 XL7 32
XL7 O4 O4 O 0 1 N N N N N N 11.359 -11.781 10.060 7.323 1.829 -0.050 O4 XL7 33
XL7 C22 C22 C 0 1 N N N N N N 11.632 -15.080 11.586 7.579 4.346 0.746 C22 XL7 34
XL7 H1 H1 H 0 1 N N N N N N 2.182 -23.032 7.228 -7.782 0.359 -1.008 H1 XL7 35
XL7 H2 H2 H 0 1 N N N N N N 4.749 -25.050 5.506 -8.936 -1.067 -0.005 H2 XL7 36
XL7 H3 H3 H 0 1 N N N N N N 4.943 -24.418 7.176 -8.312 -1.582 -1.590 H3 XL7 37
XL7 H4 H4 H 0 1 N N N N N N 3.300 -24.633 6.482 -8.891 -2.797 -0.425 H4 XL7 38
XL7 H5 H5 H 0 1 N N N N N N -0.431 -22.169 9.517 -7.870 1.811 -2.514 H5 XL7 39
XL7 H6 H6 H 0 1 N N N N N N 0.032 -22.452 7.805 -8.488 2.329 -0.927 H6 XL7 40
XL7 H7 H7 H 0 1 N N N N N N 1.027 -23.144 9.131 -8.057 3.544 -2.154 H7 XL7 41
XL7 H8 H8 H 0 1 N N N N N N 5.200 -18.099 6.248 -2.529 1.236 1.325 H8 XL7 42
XL7 H9 H9 H 0 1 N N N N N N 4.369 -17.610 7.763 -2.754 -0.467 1.793 H9 XL7 43
XL7 H10 H10 H 0 1 N N N N N N 6.222 -16.067 7.202 -0.868 0.350 2.325 H10 XL7 44
XL7 H11 H11 H 0 1 N N N N N N 8.589 -19.382 8.393 0.084 -0.864 -1.669 H11 XL7 45
XL7 H12 H12 H 0 1 N N N N N N 11.465 -16.129 7.460 3.629 -0.334 2.208 H12 XL7 46
XL7 H13 H13 H 0 1 N N N N N N 11.742 -11.250 7.835 6.893 0.624 -1.365 H13 XL7 47
XL7 H14 H14 H 0 1 N N N N N N 10.163 -12.405 4.034 5.320 -3.332 -1.668 H14 XL7 48
XL7 H15 H15 H 0 1 N N N N N N 11.893 -14.696 9.062 4.400 1.770 0.934 H15 XL7 49
XL7 H16 H16 H 0 1 N N N N N N 13.186 -13.728 11.260 5.458 4.218 0.387 H16 XL7 50
XL7 H17 H17 H 0 1 N N N N N N 11.762 -13.072 12.136 5.966 3.656 1.997 H17 XL7 51
XL7 H18 H18 H 0 1 N N N N N N 12.066 -15.412 12.541 8.341 3.795 1.297 H18 XL7 52
XL7 H19 H19 H 0 1 N N N N N N 10.534 -15.098 11.657 7.833 4.357 -0.314 H19 XL7 53
XL7 H20 H20 H 0 1 N N N N N N 11.959 -15.754 10.781 7.529 5.369 1.118 H20 XL7 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XL7 CL3 C19 SING N N 1
XL7 C18 C19 DOUB Y N 2
XL7 C18 C17 SING Y N 3
XL7 F1 C17 SING N N 4
XL7 C19 C14 SING Y N 5
XL7 CL1 C2 SING N N 6
XL7 O1 C7 SING N N 7
XL7 O1 C1 SING N N 8
XL7 C17 C16 DOUB Y N 9
XL7 C2 C1 DOUB Y N 10
XL7 C2 C3 SING Y N 11
XL7 C1 C6 SING Y N 12
XL7 C14 N3 SING N N 13
XL7 C14 C15 DOUB Y N 14
XL7 C16 C15 SING Y N 15
XL7 N1 C11 DOUB Y N 16
XL7 N1 C12 SING Y N 17
XL7 N3 C12 SING N N 18
XL7 C6 C5 DOUB Y N 19
XL7 C3 C9 SING N N 20
XL7 C3 C4 DOUB Y N 21
XL7 C9 O3 SING N N 22
XL7 C11 C10 SING Y N 23
XL7 C12 N2 DOUB Y N 24
XL7 C15 N4 SING N N 25
XL7 C10 O3 SING N N 26
XL7 C10 C13 DOUB Y N 27
XL7 N2 C13 SING Y N 28
XL7 C4 C5 SING Y N 29
XL7 C4 CL2 SING N N 30
XL7 C5 O2 SING N N 31
XL7 C8 O2 SING N N 32
XL7 N4 C20 SING N N 33
XL7 O4 C20 DOUB N N 34
XL7 C20 C21 SING N N 35
XL7 C21 C22 SING N N 36
XL7 C6 H1 SING N N 37
XL7 C7 H2 SING N N 38
XL7 C7 H3 SING N N 39
XL7 C7 H4 SING N N 40
XL7 C8 H5 SING N N 41
XL7 C8 H6 SING N N 42
XL7 C8 H7 SING N N 43
XL7 C9 H8 SING N N 44
XL7 C9 H9 SING N N 45
XL7 C11 H10 SING N N 46
XL7 C13 H11 SING N N 47
XL7 N3 H12 SING N N 48
XL7 C16 H13 SING N N 49
XL7 C18 H14 SING N N 50
XL7 N4 H15 SING N N 51
XL7 C21 H16 SING N N 52
XL7 C21 H17 SING N N 53
XL7 C22 H18 SING N N 54
XL7 C22 H19 SING N N 55
XL7 C22 H20 SING N N 56
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XL7 SMILES ACDLabs 12.01 "c1(cc(c(c(c1Cl)COc2cnc(nc2)Nc3c(NC(CC)=O)cc(cc3Cl)F)Cl)OC)OC"
XL7 InChI InChI 1.03 "InChI=1S/C22H20Cl3FN4O4/c1-4-18(31)29-15-6-11(26)5-14(23)21(15)30-22-27-8-12(9-28-22)34-10-13-19(24)16(32-2)7-17(33-3)20(13)25/h5-9H,4,10H2,1-3H3,(H,29,31)(H,27,28,30)"
XL7 InChIKey InChI 1.03 MGRZNNQBILIXES-UHFFFAOYSA-N
XL7 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(F)cc(Cl)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"
XL7 SMILES CACTVS 3.385 "CCC(=O)Nc1cc(F)cc(Cl)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"
XL7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(cc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)Cl)F"
XL7 SMILES "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(cc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)Cl)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XL7 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[3-chloro-2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-5-fluorophenyl]propanamide"
XL7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[2-[[5-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]methoxy]pyrimidin-2-yl]amino]-3-chloranyl-5-fluoranyl-phenyl]propanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XL7 "Create component" 2017-11-05 RCSB
XL7 "Initial release" 2019-07-10 RCSB
XL7 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id XL7
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C22
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#