data_XL9
#
_chem_comp.id XL9
_chem_comp.name "N-[(3S,4S)-3-{[6-(2,6-dichloro-3,5-dimethoxyphenyl)quinazolin-2-yl]amino}oxan-4-yl]propanamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H26 Cl2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-11-05
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 505.394
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XL9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6BIW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XL9 C1 C1 C 0 1 Y N N N N N 21.802 -3.781 -6.634 6.072 1.115 0.460 C1 XL9 1
XL9 C2 C2 C 0 1 Y N N N N N 20.722 -4.652 -6.627 4.695 1.237 0.349 C2 XL9 2
XL9 C3 C3 C 0 1 Y N N N N N 19.640 -4.467 -7.498 3.941 0.176 -0.149 C3 XL9 3
XL9 C4 C4 C 0 1 Y N N N N N 19.676 -3.366 -8.366 4.574 -1.005 -0.532 C4 XL9 4
XL9 C5 C5 C 0 1 Y N N N N N 20.745 -2.482 -8.374 5.951 -1.120 -0.418 C5 XL9 5
XL9 C6 C6 C 0 1 Y N N N N N 21.803 -2.696 -7.502 6.699 -0.060 0.073 C6 XL9 6
XL9 O1 O1 O 0 1 N N N N N N 22.796 -4.072 -5.748 6.808 2.149 0.945 O1 XL9 7
XL9 O2 O2 O 0 1 N N N N N N 20.645 -1.460 -9.278 6.569 -2.272 -0.792 O2 XL9 8
XL9 C7 C7 C 0 1 N N N N N N 23.994 -3.300 -5.755 8.221 1.954 1.033 C7 XL9 9
XL9 C8 C8 C 0 1 N N N N N N 21.685 -0.493 -9.381 7.990 -2.322 -0.647 C8 XL9 10
XL9 C9 C9 C 0 1 Y N N N N N 18.516 -5.442 -7.493 2.468 0.303 -0.269 C9 XL9 11
XL9 C10 C10 C 0 1 Y N N N N N 18.755 -6.740 -7.873 1.645 -0.497 0.503 C10 XL9 12
XL9 C11 C11 C 0 1 Y N N N N N 17.742 -7.713 -7.840 0.255 -0.370 0.383 C11 XL9 13
XL9 C12 C12 C 0 1 Y N N N N N 16.433 -7.344 -7.447 -0.288 0.575 -0.527 C12 XL9 14
XL9 C13 C13 C 0 1 Y N N N N N 16.174 -6.005 -7.084 0.574 1.371 -1.296 C13 XL9 15
XL9 C14 C14 C 0 1 Y N N N N N 17.191 -5.094 -7.079 1.921 1.237 -1.162 C14 XL9 16
XL9 C15 C15 C 0 1 Y N N N N N 17.953 -9.065 -8.186 -0.633 -1.156 1.142 C15 XL9 17
XL9 N1 N1 N 0 1 Y N N N N N 16.981 -9.966 -8.129 -1.927 -0.980 0.974 N1 XL9 18
XL9 C16 C16 C 0 1 Y N N N N N 15.751 -9.547 -7.749 -2.402 -0.084 0.111 C16 XL9 19
XL9 N2 N2 N 0 1 Y N N N N N 15.431 -8.278 -7.421 -1.619 0.679 -0.626 N2 XL9 20
XL9 N3 N3 N 0 1 N N N N N N 14.704 -10.542 -7.684 -3.773 0.051 -0.018 N3 XL9 21
XL9 C17 C17 C 0 1 N N S N N N 13.275 -10.246 -7.657 -4.670 -0.783 0.786 C17 XL9 22
XL9 C18 C18 C 0 1 N N S N N N 12.476 -11.455 -8.148 -6.020 -0.077 0.945 C18 XL9 23
XL9 C19 C19 C 0 1 N N N N N N 12.367 -12.537 -7.077 -6.974 -0.992 1.720 C19 XL9 24
XL9 C20 C20 C 0 1 N N N N N N 11.998 -11.959 -5.735 -7.099 -2.328 0.983 C20 XL9 25
XL9 O3 O3 O 0 1 N N N N N N 12.906 -10.929 -5.357 -5.805 -2.916 0.842 O3 XL9 26
XL9 C21 C21 C 0 1 N N N N N N 12.829 -9.832 -6.264 -4.884 -2.127 0.085 C21 XL9 27
XL9 N4 N4 N 0 1 N N N N N N 13.081 -12.030 -9.349 -6.582 0.208 -0.378 N4 XL9 28
XL9 C22 C22 C 0 1 N N N N N N 12.664 -11.810 -10.598 -7.457 1.221 -0.533 C22 XL9 29
XL9 C23 C23 C 0 1 N N N N N N 13.434 -12.541 -11.662 -8.035 1.515 -1.894 C23 XL9 30
XL9 C24 C24 C 0 1 N N N N N N 14.840 -12.031 -11.815 -8.993 2.704 -1.795 C24 XL9 31
XL9 O4 O4 O 0 1 N N N N N N 11.737 -11.055 -10.870 -7.780 1.896 0.421 O4 XL9 32
XL9 CL1 CL1 CL 0 0 N N N N N N 20.715 -6.004 -5.522 3.912 2.710 0.828 CL1 XL9 33
XL9 CL2 CL2 CL 0 0 N N N N N N 18.378 -3.089 -9.473 3.640 -2.331 -1.152 CL2 XL9 34
XL9 H1 H1 H 0 1 N N N N N N 22.638 -2.011 -7.498 7.771 -0.153 0.161 H1 XL9 35
XL9 H2 H2 H 0 1 N N N N N N 24.677 -3.675 -4.979 8.688 2.854 1.434 H2 XL9 36
XL9 H3 H3 H 0 1 N N N N N N 24.478 -3.383 -6.740 8.432 1.112 1.691 H3 XL9 37
XL9 H4 H4 H 0 1 N N N N N N 23.752 -2.246 -5.553 8.622 1.749 0.041 H4 XL9 38
XL9 H5 H5 H 0 1 N N N N N N 21.426 0.243 -10.156 8.445 -1.536 -1.250 H5 XL9 39
XL9 H6 H6 H 0 1 N N N N N N 21.806 0.019 -8.415 8.254 -2.174 0.401 H6 XL9 40
XL9 H7 H7 H 0 1 N N N N N N 22.626 -0.994 -9.651 8.355 -3.293 -0.980 H7 XL9 41
XL9 H8 H8 H 0 1 N N N N N N 19.744 -7.019 -8.205 2.069 -1.213 1.192 H8 XL9 42
XL9 H9 H9 H 0 1 N N N N N N 15.174 -5.702 -6.811 0.169 2.092 -1.990 H9 XL9 43
XL9 H10 H10 H 0 1 N N N N N N 16.990 -4.084 -6.754 2.579 1.856 -1.754 H10 XL9 44
XL9 H11 H11 H 0 1 N N N N N N 18.936 -9.376 -8.507 -0.261 -1.887 1.845 H11 XL9 45
XL9 H12 H12 H 0 1 N N N N N N 14.841 -11.127 -8.483 -4.140 0.697 -0.640 H12 XL9 46
XL9 H13 H13 H 0 1 N N N N N N 13.074 -9.408 -8.341 -4.228 -0.951 1.769 H13 XL9 47
XL9 H14 H14 H 0 1 N N N N N N 11.459 -11.114 -8.391 -5.882 0.855 1.493 H14 XL9 48
XL9 H15 H15 H 0 1 N N N N N N 11.595 -13.260 -7.378 -6.580 -1.164 2.722 H15 XL9 49
XL9 H16 H16 H 0 1 N N N N N N 13.336 -13.051 -6.990 -7.954 -0.520 1.789 H16 XL9 50
XL9 H17 H17 H 0 1 N N N N N N 10.982 -11.541 -5.790 -7.743 -2.998 1.552 H17 XL9 51
XL9 H18 H18 H 0 1 N N N N N N 12.025 -12.758 -4.979 -7.531 -2.159 -0.004 H18 XL9 52
XL9 H19 H19 H 0 1 N N N N N N 13.479 -9.021 -5.904 -5.287 -1.956 -0.913 H19 XL9 53
XL9 H20 H20 H 0 1 N N N N N N 11.789 -9.475 -6.310 -3.933 -2.653 0.008 H20 XL9 54
XL9 H21 H21 H 0 1 N N N N N N 13.868 -12.635 -9.225 -6.323 -0.331 -1.141 H21 XL9 55
XL9 H22 H22 H 0 1 N N N N N N 12.910 -12.420 -12.621 -7.229 1.755 -2.587 H22 XL9 56
XL9 H23 H23 H 0 1 N N N N N N 13.474 -13.608 -11.397 -8.577 0.641 -2.255 H23 XL9 57
XL9 H24 H24 H 0 1 N N N N N N 15.353 -12.600 -12.604 -9.800 2.464 -1.102 H24 XL9 58
XL9 H25 H25 H 0 1 N N N N N N 14.816 -10.966 -12.088 -8.452 3.578 -1.433 H25 XL9 59
XL9 H26 H26 H 0 1 N N N N N N 15.380 -12.153 -10.864 -9.411 2.916 -2.779 H26 XL9 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XL9 C24 C23 SING N N 1
XL9 C23 C22 SING N N 2
XL9 O4 C22 DOUB N N 3
XL9 C22 N4 SING N N 4
XL9 CL2 C4 SING N N 5
XL9 C8 O2 SING N N 6
XL9 N4 C18 SING N N 7
XL9 O2 C5 SING N N 8
XL9 C5 C4 DOUB Y N 9
XL9 C5 C6 SING Y N 10
XL9 C4 C3 SING Y N 11
XL9 C15 N1 DOUB Y N 12
XL9 C15 C11 SING Y N 13
XL9 C18 C17 SING N N 14
XL9 C18 C19 SING N N 15
XL9 N1 C16 SING Y N 16
XL9 C10 C11 DOUB Y N 17
XL9 C10 C9 SING Y N 18
XL9 C11 C12 SING Y N 19
XL9 C16 N3 SING N N 20
XL9 C16 N2 DOUB Y N 21
XL9 N3 C17 SING N N 22
XL9 C17 C21 SING N N 23
XL9 C6 C1 DOUB Y N 24
XL9 C3 C9 SING N N 25
XL9 C3 C2 DOUB Y N 26
XL9 C9 C14 DOUB Y N 27
XL9 C12 N2 SING Y N 28
XL9 C12 C13 DOUB Y N 29
XL9 C13 C14 SING Y N 30
XL9 C19 C20 SING N N 31
XL9 C1 C2 SING Y N 32
XL9 C1 O1 SING N N 33
XL9 C2 CL1 SING N N 34
XL9 C21 O3 SING N N 35
XL9 C7 O1 SING N N 36
XL9 C20 O3 SING N N 37
XL9 C6 H1 SING N N 38
XL9 C7 H2 SING N N 39
XL9 C7 H3 SING N N 40
XL9 C7 H4 SING N N 41
XL9 C8 H5 SING N N 42
XL9 C8 H6 SING N N 43
XL9 C8 H7 SING N N 44
XL9 C10 H8 SING N N 45
XL9 C13 H9 SING N N 46
XL9 C14 H10 SING N N 47
XL9 C15 H11 SING N N 48
XL9 N3 H12 SING N N 49
XL9 C17 H13 SING N N 50
XL9 C18 H14 SING N N 51
XL9 C19 H15 SING N N 52
XL9 C19 H16 SING N N 53
XL9 C20 H17 SING N N 54
XL9 C20 H18 SING N N 55
XL9 C21 H19 SING N N 56
XL9 C21 H20 SING N N 57
XL9 N4 H21 SING N N 58
XL9 C23 H22 SING N N 59
XL9 C23 H23 SING N N 60
XL9 C24 H24 SING N N 61
XL9 C24 H25 SING N N 62
XL9 C24 H26 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XL9 SMILES ACDLabs 12.01 "c4(c(Cl)c(c1ccc3c(c1)cnc(NC2COCCC2NC(CC)=O)n3)c(c(c4)OC)Cl)OC"
XL9 InChI InChI 1.03 "InChI=1S/C24H26Cl2N4O4/c1-4-20(31)28-16-7-8-34-12-17(16)30-24-27-11-14-9-13(5-6-15(14)29-24)21-22(25)18(32-2)10-19(33-3)23(21)26/h5-6,9-11,16-17H,4,7-8,12H2,1-3H3,(H,28,31)(H,27,29,30)/t16-,17+/m0/s1"
XL9 InChIKey InChI 1.03 YLMQSRWGLUFWCN-DLBZAZTESA-N
XL9 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N[C@H]1CCOC[C@H]1Nc2ncc3cc(ccc3n2)c4c(Cl)c(OC)cc(OC)c4Cl"
XL9 SMILES CACTVS 3.385 "CCC(=O)N[CH]1CCOC[CH]1Nc2ncc3cc(ccc3n2)c4c(Cl)c(OC)cc(OC)c4Cl"
XL9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N[C@H]1CCOC[C@H]1Nc2ncc3cc(ccc3n2)c4c(c(cc(c4Cl)OC)OC)Cl"
XL9 SMILES "OpenEye OEToolkits" 2.0.6 "CCC(=O)NC1CCOCC1Nc2ncc3cc(ccc3n2)c4c(c(cc(c4Cl)OC)OC)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XL9 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3S,4S)-3-{[6-(2,6-dichloro-3,5-dimethoxyphenyl)quinazolin-2-yl]amino}oxan-4-yl]propanamide"
XL9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(3~{S},4~{S})-3-[[6-[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]quinazolin-2-yl]amino]oxan-4-yl]propanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XL9 "Create component" 2017-11-05 RCSB
XL9 "Initial release" 2019-07-10 RCSB
XL9 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id XL9
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C24
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#