data_XLR # _chem_comp.id XLR _chem_comp.name "1,5,6-trideoxy-6,6-difluoro-1-(N-hydroxyformamido)-6-phosphono-D-ribo-hexitol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H14 F2 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-29 _chem_comp.pdbx_modified_date 2023-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.159 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XLR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FAP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XLR N N1 N 0 1 N N N N N N 6.257 -4.112 -1.415 -4.876 0.450 0.067 N XLR 1 XLR C C1 C 0 1 N N N N N N 6.143 -4.560 -0.051 -5.377 -0.737 0.461 C XLR 2 XLR O O1 O 0 1 N N N N N N 14.962 -2.502 -2.596 5.201 -0.473 -0.541 O XLR 3 XLR C01 C2 C 0 1 N N N N N N 12.828 -4.026 -3.323 2.500 -0.378 -0.447 C01 XLR 4 XLR C02 C3 C 0 1 N N N N N N 11.442 -4.533 -2.902 1.368 0.310 0.318 C02 XLR 5 XLR C03 C4 C 0 1 N N R N N N 10.449 -4.494 -4.082 0.021 -0.169 -0.225 C03 XLR 6 XLR C04 C5 C 0 1 N N R N N N 9.114 -5.105 -3.720 -1.108 0.610 0.452 C04 XLR 7 XLR C05 C6 C 0 1 N N S N N N 8.422 -4.298 -2.614 -2.456 0.130 -0.090 C05 XLR 8 XLR C06 C7 C 0 1 N N N N N N 7.021 -4.863 -2.413 -3.585 0.909 0.587 C06 XLR 9 XLR F F1 F 0 1 N N N N N N 12.698 -3.139 -4.300 2.398 -1.764 -0.284 F XLR 10 XLR F01 F2 F 0 1 N N N N N N 13.577 -5.062 -3.727 2.405 -0.060 -1.806 F01 XLR 11 XLR O01 O2 O 0 1 N N N N N N 14.156 -4.173 -0.977 4.216 -0.173 1.764 O01 XLR 12 XLR O02 O3 O 0 1 N N N N N N 5.486 -3.881 0.729 -6.445 -1.117 0.031 O02 XLR 13 XLR O03 O4 O 0 1 N N N N N N 5.585 -2.951 -1.733 -5.593 1.252 -0.853 O03 XLR 14 XLR O04 O5 O 0 1 N N N N N N 8.358 -2.953 -2.973 -2.610 -1.264 0.181 O04 XLR 15 XLR O05 O6 O 0 1 N N N N N N 9.281 -6.423 -3.280 -0.954 2.004 0.181 O05 XLR 16 XLR O06 O7 O 0 1 N N N N N N 10.992 -5.161 -5.194 -0.133 -1.564 0.046 O06 XLR 17 XLR O07 O8 O 0 1 N N N N N N 12.846 -2.133 -1.340 4.224 1.788 0.012 O07 XLR 18 XLR P P1 P 0 1 N N N N N N 13.743 -3.157 -2.001 4.106 0.193 0.199 P XLR 19 XLR H1 H1 H 0 1 N N N N N N 6.624 -5.470 0.276 -4.827 -1.350 1.160 H1 XLR 20 XLR H2 H2 H 0 1 N N N N N N 11.059 -3.897 -2.090 1.442 0.062 1.377 H2 XLR 21 XLR H3 H3 H 0 1 N N N N N N 11.533 -5.569 -2.544 1.448 1.390 0.191 H3 XLR 22 XLR H4 H4 H 0 1 N N N N N N 10.279 -3.438 -4.338 -0.018 -0.002 -1.302 H4 XLR 23 XLR H5 H5 H 0 1 N N N N N N 8.470 -5.086 -4.612 -1.070 0.442 1.529 H5 XLR 24 XLR H6 H6 H 0 1 N N N N N N 8.991 -4.422 -1.681 -2.494 0.298 -1.167 H6 XLR 25 XLR H7 H7 H 0 1 N N N N N N 6.483 -4.825 -3.372 -3.468 1.973 0.380 H7 XLR 26 XLR H8 H8 H 0 1 N N N N N N 7.105 -5.908 -2.081 -3.547 0.742 1.664 H8 XLR 27 XLR H9 H9 H 0 1 N N N N N N 15.104 -4.194 -0.915 3.528 0.230 2.311 H9 XLR 28 XLR H10 H10 H 0 1 N N N N N N 5.143 -2.619 -0.960 -5.155 2.084 -1.076 H10 XLR 29 XLR H11 H11 H 0 1 N N N N N N 7.928 -2.461 -2.283 -2.586 -1.487 1.121 H11 XLR 30 XLR H12 H12 H 0 1 N N N N N N 8.435 -6.792 -3.057 -0.979 2.227 -0.759 H12 XLR 31 XLR H13 H13 H 0 1 N N N N N N 11.830 -4.774 -5.418 -0.109 -1.787 0.987 H13 XLR 32 XLR H14 H14 H 0 1 N N N N N N 13.231 -1.269 -1.430 5.055 2.161 0.335 H14 XLR 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XLR O06 C03 SING N N 1 XLR F C01 SING N N 2 XLR C03 C04 SING N N 3 XLR C03 C02 SING N N 4 XLR F01 C01 SING N N 5 XLR C04 O05 SING N N 6 XLR C04 C05 SING N N 7 XLR C01 C02 SING N N 8 XLR C01 P SING N N 9 XLR O04 C05 SING N N 10 XLR C05 C06 SING N N 11 XLR O P DOUB N N 12 XLR C06 N SING N N 13 XLR P O07 SING N N 14 XLR P O01 SING N N 15 XLR O03 N SING N N 16 XLR N C SING N N 17 XLR C O02 DOUB N N 18 XLR C H1 SING N N 19 XLR C02 H2 SING N N 20 XLR C02 H3 SING N N 21 XLR C03 H4 SING N N 22 XLR C04 H5 SING N N 23 XLR C05 H6 SING N N 24 XLR C06 H7 SING N N 25 XLR C06 H8 SING N N 26 XLR O01 H9 SING N N 27 XLR O03 H10 SING N N 28 XLR O04 H11 SING N N 29 XLR O05 H12 SING N N 30 XLR O06 H13 SING N N 31 XLR O07 H14 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XLR SMILES ACDLabs 12.01 "FC(F)(CC(O)C(O)C(O)CN(O)C=O)P(=O)(O)O" XLR InChI InChI 1.06 "InChI=1S/C7H14F2NO8P/c8-7(9,19(16,17)18)1-4(12)6(14)5(13)2-10(15)3-11/h3-6,12-15H,1-2H2,(H2,16,17,18)/t4-,5+,6-/m1/s1" XLR InChIKey InChI 1.06 JNDAAKGDFVOUBF-NGJCXOISSA-N XLR SMILES_CANONICAL CACTVS 3.385 "O[C@@H](CN(O)C=O)[C@H](O)[C@H](O)CC(F)(F)[P](O)(O)=O" XLR SMILES CACTVS 3.385 "O[CH](CN(O)C=O)[CH](O)[CH](O)CC(F)(F)[P](O)(O)=O" XLR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]([C@H]([C@H](CN(C=O)O)O)O)O)C(F)(F)P(=O)(O)O" XLR SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(C(CN(C=O)O)O)O)O)C(F)(F)P(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XLR "SYSTEMATIC NAME" ACDLabs 12.01 "1,5,6-trideoxy-6,6-difluoro-1-(N-hydroxyformamido)-6-phosphono-D-ribo-hexitol" XLR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R},4~{R},5~{S})-1,1-bis(fluoranyl)-6-[methanoyl(oxidanyl)amino]-3,4,5-tris(oxidanyl)hexyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XLR "Create component" 2022-11-29 RCSB XLR "Initial release" 2023-12-06 RCSB #