data_XLS # _chem_comp.id XLS _chem_comp.name D-xylose _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "D-XYLOSE (LINEAR FORM)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XLS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3XIS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XLS _pdbx_chem_comp_synonyms.name "D-XYLOSE (LINEAR FORM)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XLS C1 C1 C 0 1 N N N 10.368 33.903 47.391 0.359 0.090 -2.611 C1 XLS 1 XLS C2 C2 C 0 1 N N R 11.506 34.167 46.413 -0.257 -0.408 -1.330 C2 XLS 2 XLS C3 C3 C 0 1 N N S 12.131 32.856 45.937 0.602 0.033 -0.144 C3 XLS 3 XLS C4 C4 C 0 1 N N R 13.647 32.959 45.869 -0.024 -0.472 1.156 C4 XLS 4 XLS C5 C5 C 0 1 N N N 14.227 31.549 45.885 0.836 -0.031 2.341 C5 XLS 5 XLS O1 O1 O 0 1 N N N 9.765 35.065 47.886 0.700 -0.695 -3.463 O1 XLS 6 XLS O2 O2 O 0 1 N N N 11.287 35.112 45.370 -1.572 0.134 -1.192 O2 XLS 7 XLS O3 O3 O 0 1 N N N 11.645 32.587 44.606 0.676 1.459 -0.114 O3 XLS 8 XLS O4 O4 O 0 1 N N N 13.992 33.517 44.602 -1.339 0.069 1.293 O4 XLS 9 XLS O5 O5 O 0 1 N N N 14.776 31.184 47.102 0.251 -0.504 3.556 O5 XLS 10 XLS H1 H1 H 0 1 N N N 9.998 32.918 47.724 0.496 1.150 -2.768 H1 XLS 11 XLS H2 H2 H 0 1 N N N 12.253 34.725 47.023 -0.314 -1.496 -1.353 H2 XLS 12 XLS H3 H3 H 0 1 N N N 11.856 32.047 46.654 1.605 -0.380 -0.249 H3 XLS 13 XLS H4 H4 H 0 1 N N N 14.028 33.572 46.718 -0.080 -1.561 1.133 H4 XLS 14 XLS H51 H51 H 0 1 N N N 13.461 30.805 45.561 0.892 1.056 2.364 H51 XLS 15 XLS H52 H52 H 0 1 N N N 14.971 31.421 45.064 1.839 -0.445 2.236 H52 XLS 16 XLS HO2 HO2 H 0 1 N N N 11.996 35.276 44.760 -1.478 1.096 -1.176 HO2 XLS 17 XLS HO3 HO3 H 0 1 N N N 12.033 31.772 44.310 -0.229 1.784 -0.020 HO3 XLS 18 XLS HO4 HO4 H 0 1 N N N 14.938 33.581 44.559 -1.244 1.031 1.310 HO4 XLS 19 XLS HO5 HO5 H 0 1 N N N 15.137 30.305 47.112 0.822 -0.205 4.277 HO5 XLS 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XLS C1 C2 SING N N 1 XLS C1 O1 DOUB N N 2 XLS C1 H1 SING N N 3 XLS C2 C3 SING N N 4 XLS C2 O2 SING N N 5 XLS C2 H2 SING N N 6 XLS C3 C4 SING N N 7 XLS C3 O3 SING N N 8 XLS C3 H3 SING N N 9 XLS C4 C5 SING N N 10 XLS C4 O4 SING N N 11 XLS C4 H4 SING N N 12 XLS C5 O5 SING N N 13 XLS C5 H51 SING N N 14 XLS C5 H52 SING N N 15 XLS O2 HO2 SING N N 16 XLS O3 HO3 SING N N 17 XLS O4 HO4 SING N N 18 XLS O5 HO5 SING N N 19 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XLS SMILES ACDLabs 10.04 "O=CC(O)C(O)C(O)CO" XLS SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)[C@H](O)[C@@H](O)C=O" XLS SMILES CACTVS 3.341 "OC[CH](O)[CH](O)[CH](O)C=O" XLS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@@H]([C@H](C=O)O)O)O)O" XLS SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(C=O)O)O)O)O" XLS InChI InChI 1.03 "InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4+,5+/m0/s1" XLS InChIKey InChI 1.03 PYMYPHUHKUWMLA-VPENINKCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XLS "SYSTEMATIC NAME" ACDLabs 10.04 D-xylose XLS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4R)-2,3,4,5-tetrahydroxypentanal" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support XLS "CARBOHYDRATE ISOMER" D PDB ? XLS "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XLS "Create component" 1999-07-08 RCSB XLS "Modify descriptor" 2011-06-04 RCSB XLS "Other modification" 2020-07-03 RCSB XLS "Modify name" 2020-07-17 RCSB XLS "Modify synonyms" 2020-07-17 RCSB XLS "Modify linking type" 2020-07-17 RCSB ##