data_XLT # _chem_comp.id XLT _chem_comp.name "5-{3-[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl]-3-oxopropyl}-1,3-oxazol-2(3H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-07 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 538.635 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XLT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G7D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XLT C10 C1 C 0 1 Y N N N N N -13.139 9.012 44.905 -0.410 0.416 -1.922 C10 XLT 1 XLT C11 C2 C 0 1 Y N N N N N -12.384 8.684 43.779 -1.270 1.456 -1.633 C11 XLT 2 XLT C13 C3 C 0 1 Y N N N N N -12.659 6.409 44.170 -2.780 0.031 -0.623 C13 XLT 3 XLT C16 C4 C 0 1 N N N N N N -11.609 4.866 42.654 -4.744 1.036 0.257 C16 XLT 4 XLT C17 C5 C 0 1 N N N N N N -11.470 3.327 42.575 -6.035 0.651 0.984 C17 XLT 5 XLT C18 C6 C 0 1 N N N N N N -10.761 2.917 41.267 -6.812 1.919 1.353 C18 XLT 6 XLT C19 C7 C 0 1 N N N N N N -10.661 1.375 41.231 -8.138 1.522 2.008 C19 XLT 7 XLT C21 C8 C 0 1 N N N N N N -10.516 1.279 43.628 -8.222 -0.530 0.770 C21 XLT 8 XLT C22 C9 C 0 1 N N N N N N -10.611 2.806 43.726 -6.900 -0.216 0.065 C22 XLT 9 XLT C23 C10 C 0 1 N N N N N N -11.795 9.705 42.883 -0.902 2.859 -2.043 C23 XLT 10 XLT C24 C11 C 0 1 N N N N N N -10.515 9.387 42.126 -0.007 3.660 -1.094 C24 XLT 11 XLT C25 C12 C 0 1 N N N N N N -11.828 9.519 41.369 0.559 3.127 -2.412 C25 XLT 12 XLT C27 C13 C 0 1 N N N N N N -13.572 12.386 50.630 3.904 -3.706 0.916 C27 XLT 13 XLT C1 C14 C 0 1 N N N N N N -12.861 8.946 48.193 -0.603 -3.090 0.249 C1 XLT 14 XLT C2 C15 C 0 1 N N N N N N -12.176 10.249 47.820 0.186 -3.754 1.383 C2 XLT 15 XLT C3 C16 C 0 1 N N S N N N -12.683 11.497 48.546 1.633 -3.359 1.432 C3 XLT 16 XLT C4 C17 C 0 1 N N R N N N -13.974 11.484 49.455 2.526 -4.419 0.657 C4 XLT 17 XLT C5 C18 C 0 1 N N N N N N -14.491 10.160 50.011 2.327 -4.168 -0.834 C5 XLT 18 XLT C6 C19 C 0 1 N N N N N N -15.184 9.296 48.942 0.915 -4.285 -1.342 C6 XLT 19 XLT N7 N1 N 0 1 N N N N N N -14.255 8.981 47.840 0.149 -3.096 -1.010 N7 XLT 20 XLT C8 C20 C 0 1 N N N N N N -14.682 8.317 46.734 0.131 -2.030 -1.834 C8 XLT 21 XLT C9 C21 C 0 1 Y N N N N N -13.693 7.952 45.664 -0.763 -0.884 -1.544 C9 XLT 22 XLT N12 N2 N 0 1 Y N N N N N -12.146 7.401 43.389 -2.409 1.241 -1.004 N12 XLT 23 XLT C14 C22 C 0 1 Y N N N N N -13.444 6.603 45.339 -1.979 -1.073 -0.885 C14 XLT 24 XLT O15 O1 O 0 1 N N N N N N -12.393 5.127 43.843 -3.965 -0.137 0.017 O15 XLT 25 XLT O20 O2 O 0 1 N N N N N N -9.960 0.866 42.376 -8.880 0.691 1.113 O20 XLT 26 XLT O26 O3 O 0 1 N N N N N N -15.865 8.057 46.611 0.847 -2.008 -2.816 O26 XLT 27 XLT N28 N3 N 0 1 N N N N N N -12.105 12.254 50.721 3.617 -2.257 0.896 N28 XLT 28 XLT C29 C23 C 0 1 N N N N N N -11.513 12.017 49.420 2.141 -2.062 0.848 C29 XLT 29 XLT C30 C24 C 0 1 N N N N N N -11.408 12.380 51.917 4.538 -1.274 0.919 C30 XLT 30 XLT C31 C25 C 0 1 N N N N N N -9.900 12.212 51.844 4.102 0.168 0.895 C31 XLT 31 XLT C32 C26 C 0 1 N N N N N N -9.244 12.899 53.043 5.334 1.074 0.928 C32 XLT 32 XLT C33 C27 C 0 1 N N N N N N -7.837 12.441 53.152 4.898 2.517 0.905 C33 XLT 33 XLT C34 C28 C 0 1 N N N N N N -7.108 11.972 54.195 4.729 3.293 1.966 C34 XLT 34 XLT N35 N4 N 0 1 N N N N N N -5.822 11.691 53.687 4.324 4.542 1.513 N35 XLT 35 XLT C36 C29 C 0 1 N N N N N N -5.829 12.013 52.304 4.261 4.479 0.167 C36 XLT 36 XLT O37 O4 O 0 1 N N N N N N -7.073 12.478 51.979 4.618 3.240 -0.205 O37 XLT 37 XLT O38 O5 O 0 1 N N N N N N -4.984 11.928 51.451 3.942 5.386 -0.578 O38 XLT 38 XLT O39 O6 O 0 1 N N N N N N -12.016 12.642 52.974 5.719 -1.550 0.959 O39 XLT 39 XLT H50 H1 H 0 1 N N N N N N -13.296 10.042 45.189 0.520 0.602 -2.438 H50 XLT 40 XLT H53 H2 H 0 1 N N N N N N -12.125 5.251 41.762 -4.989 1.510 -0.693 H53 XLT 41 XLT H52 H3 H 0 1 N N N N N N -10.618 5.337 42.737 -4.174 1.731 0.874 H52 XLT 42 XLT H54 H4 H 0 1 N N N N N N -12.467 2.865 42.615 -5.792 0.096 1.889 H54 XLT 43 XLT H56 H5 H 0 1 N N N N N N -11.341 3.272 40.403 -6.225 2.516 2.051 H56 XLT 44 XLT H55 H6 H 0 1 N N N N N N -9.753 3.356 41.237 -7.010 2.500 0.452 H55 XLT 45 XLT H57 H7 H 0 1 N N N N N N -11.676 0.951 41.216 -7.938 0.976 2.930 H57 XLT 46 XLT H58 H8 H 0 1 N N N N N N -10.124 1.073 40.320 -8.714 2.419 2.234 H58 XLT 47 XLT H60 H9 H 0 1 N N N N N N -11.524 0.851 43.729 -8.860 -1.112 0.104 H60 XLT 48 XLT H59 H10 H 0 1 N N N N N N -9.877 0.908 44.443 -8.024 -1.104 1.675 H59 XLT 49 XLT H62 H11 H 0 1 N N N N N N -9.604 3.243 43.661 -7.100 0.322 -0.862 H62 XLT 50 XLT H61 H12 H 0 1 N N N N N N -11.071 3.086 44.685 -6.377 -1.145 -0.158 H61 XLT 51 XLT H63 H13 H 0 1 N N N N N N -11.886 10.747 43.223 -1.668 3.405 -2.592 H63 XLT 52 XLT H64 H14 H 0 1 N N N N N N -9.737 10.157 42.015 -0.185 4.733 -1.020 H64 XLT 53 XLT H65 H15 H 0 1 N N N N N N -10.042 8.400 42.237 0.315 3.172 -0.174 H65 XLT 54 XLT H67 H16 H 0 1 N N N N N N -12.305 8.628 40.934 1.253 2.288 -2.359 H67 XLT 55 XLT H66 H17 H 0 1 N N N N N N -12.000 10.384 40.712 0.753 3.849 -3.205 H66 XLT 56 XLT H69 H18 H 0 1 N N N N N N -13.856 13.430 50.432 4.301 -3.998 1.888 H69 XLT 57 XLT H68 H19 H 0 1 N N N N N N -14.050 12.046 51.561 4.614 -3.960 0.128 H68 XLT 58 XLT H43 H20 H 0 1 N N N N N N -12.374 8.117 47.658 -1.541 -3.628 0.106 H43 XLT 59 XLT H42 H21 H 0 1 N N N N N N -12.768 8.787 49.278 -0.825 -2.060 0.526 H42 XLT 60 XLT H44 H22 H 0 1 N N N N N N -11.104 10.142 48.040 -0.279 -3.487 2.333 H44 XLT 61 XLT H45 H23 H 0 1 N N N N N N -12.315 10.407 46.740 0.125 -4.836 1.263 H45 XLT 62 XLT H41 H24 H 0 1 N N N N N N -12.859 12.261 47.775 1.947 -3.384 2.476 H41 XLT 63 XLT H40 H25 H 0 1 N N N N N N -14.787 11.974 48.899 2.441 -5.453 0.989 H40 XLT 64 XLT H47 H26 H 0 1 N N N N N N -13.641 9.596 50.423 2.687 -3.164 -1.060 H47 XLT 65 XLT H46 H27 H 0 1 N N N N N N -15.213 10.373 50.813 2.946 -4.877 -1.384 H46 XLT 66 XLT H48 H28 H 0 1 N N N N N N -15.528 8.358 49.403 0.932 -4.410 -2.425 H48 XLT 67 XLT H49 H29 H 0 1 N N N N N N -16.048 9.845 48.539 0.441 -5.155 -0.888 H49 XLT 68 XLT H51 H30 H 0 1 N N N N N N -13.820 5.782 45.931 -2.286 -2.060 -0.572 H51 XLT 69 XLT H71 H31 H 0 1 N N N N N N -10.715 11.263 49.488 1.799 -1.937 -0.179 H71 XLT 70 XLT H70 H32 H 0 1 N N N N N N -11.103 12.949 49.005 1.840 -1.214 1.464 H70 XLT 71 XLT H72 H33 H 0 1 N N N N N N -9.651 11.141 51.856 3.534 0.361 -0.015 H72 XLT 72 XLT H73 H34 H 0 1 N N N N N N -9.527 12.665 50.914 3.477 0.373 1.764 H73 XLT 73 XLT H75 H35 H 0 1 N N N N N N -9.267 13.990 52.901 5.902 0.882 1.838 H75 XLT 74 XLT H74 H36 H 0 1 N N N N N N -9.789 12.637 53.962 5.959 0.870 0.059 H74 XLT 75 XLT H76 H37 H 0 1 N N N N N N -7.445 11.840 55.213 4.878 3.006 2.997 H76 XLT 76 XLT H77 H38 H 0 1 N N N N N N -5.047 11.331 54.206 4.124 5.316 2.062 H77 XLT 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XLT C1 C2 SING N N 1 XLT C1 N7 SING N N 2 XLT C2 C3 SING N N 3 XLT C3 C4 SING N N 4 XLT C3 C29 SING N N 5 XLT C4 C5 SING N N 6 XLT C4 C27 SING N N 7 XLT C5 C6 SING N N 8 XLT C6 N7 SING N N 9 XLT N7 C8 SING N N 10 XLT C8 C9 SING N N 11 XLT C8 O26 DOUB N N 12 XLT C9 C10 DOUB Y N 13 XLT C9 C14 SING Y N 14 XLT C10 C11 SING Y N 15 XLT C11 N12 DOUB Y N 16 XLT C11 C23 SING N N 17 XLT N12 C13 SING Y N 18 XLT C13 C14 DOUB Y N 19 XLT C13 O15 SING N N 20 XLT O15 C16 SING N N 21 XLT C16 C17 SING N N 22 XLT C17 C18 SING N N 23 XLT C17 C22 SING N N 24 XLT C18 C19 SING N N 25 XLT C19 O20 SING N N 26 XLT O20 C21 SING N N 27 XLT C21 C22 SING N N 28 XLT C23 C24 SING N N 29 XLT C23 C25 SING N N 30 XLT C24 C25 SING N N 31 XLT C27 N28 SING N N 32 XLT N28 C29 SING N N 33 XLT N28 C30 SING N N 34 XLT C30 C31 SING N N 35 XLT C30 O39 DOUB N N 36 XLT C31 C32 SING N N 37 XLT C32 C33 SING N N 38 XLT C33 C34 DOUB N N 39 XLT C33 O37 SING N N 40 XLT C34 N35 SING N N 41 XLT N35 C36 SING N N 42 XLT C36 O37 SING N N 43 XLT C36 O38 DOUB N N 44 XLT C10 H50 SING N N 45 XLT C16 H53 SING N N 46 XLT C16 H52 SING N N 47 XLT C17 H54 SING N N 48 XLT C18 H56 SING N N 49 XLT C18 H55 SING N N 50 XLT C19 H57 SING N N 51 XLT C19 H58 SING N N 52 XLT C21 H60 SING N N 53 XLT C21 H59 SING N N 54 XLT C22 H62 SING N N 55 XLT C22 H61 SING N N 56 XLT C23 H63 SING N N 57 XLT C24 H64 SING N N 58 XLT C24 H65 SING N N 59 XLT C25 H67 SING N N 60 XLT C25 H66 SING N N 61 XLT C27 H69 SING N N 62 XLT C27 H68 SING N N 63 XLT C1 H43 SING N N 64 XLT C1 H42 SING N N 65 XLT C2 H44 SING N N 66 XLT C2 H45 SING N N 67 XLT C3 H41 SING N N 68 XLT C4 H40 SING N N 69 XLT C5 H47 SING N N 70 XLT C5 H46 SING N N 71 XLT C6 H48 SING N N 72 XLT C6 H49 SING N N 73 XLT C14 H51 SING N N 74 XLT C29 H71 SING N N 75 XLT C29 H70 SING N N 76 XLT C31 H72 SING N N 77 XLT C31 H73 SING N N 78 XLT C32 H75 SING N N 79 XLT C32 H74 SING N N 80 XLT C34 H76 SING N N 81 XLT N35 H77 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XLT SMILES ACDLabs 12.01 "O=C1NC=C(O1)CCC(=O)N1CC2CCN(CCC2C1)C(=O)c1cc(OCC2CCOCC2)nc(c1)C1CC1" XLT InChI InChI 1.06 "InChI=1S/C29H38N4O6/c34-27(4-3-24-15-30-29(36)39-24)33-16-21-5-9-32(10-6-22(21)17-33)28(35)23-13-25(20-1-2-20)31-26(14-23)38-18-19-7-11-37-12-8-19/h13-15,19-22H,1-12,16-18H2,(H,30,36)" XLT InChIKey InChI 1.06 MXHZCHZAGUZBOU-UHFFFAOYSA-N XLT SMILES_CANONICAL CACTVS 3.385 "O=C1NC=C(CCC(=O)N2C[C@H]3CCN(CC[C@H]3C2)C(=O)c4cc(OCC5CCOCC5)nc(c4)C6CC6)O1" XLT SMILES CACTVS 3.385 "O=C1NC=C(CCC(=O)N2C[CH]3CCN(CC[CH]3C2)C(=O)c4cc(OCC5CCOCC5)nc(c4)C6CC6)O1" XLT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CC[C@@H]5CN(C[C@@H]5CC4)C(=O)CCC6=CNC(=O)O6" XLT SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(nc1C2CC2)OCC3CCOCC3)C(=O)N4CCC5CN(CC5CC4)C(=O)CCC6=CNC(=O)O6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XLT "SYSTEMATIC NAME" ACDLabs 12.01 "5-{3-[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepin-2(1H)-yl]-3-oxopropyl}-1,3-oxazol-2(3H)-one" XLT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[3-[(3~{a}~{R},8~{a}~{S})-6-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridin-4-yl]carbonyl-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepin-2-yl]-3-oxidanylidene-propyl]-3~{H}-1,3-oxazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XLT "Create component" 2023-06-07 RCSB XLT "Initial release" 2024-12-18 RCSB #