data_XM8 # _chem_comp.id XM8 _chem_comp.name "7-[(1~{S})-1-[[4-(aminomethyl)phenyl]methoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 Cl N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-06-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 527.032 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XM8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PAH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XM8 C11 C1 C 0 1 Y N N N N N -29.260 -13.225 14.959 9.115 -0.152 -0.553 C11 XM8 1 XM8 C12 C2 C 0 1 Y N N N N N -28.131 -12.550 14.525 7.972 0.621 -0.461 C12 XM8 2 XM8 C13 C3 C 0 1 Y N N N N N -22.829 -12.844 13.499 2.384 0.447 -0.757 C13 XM8 3 XM8 C17 C4 C 0 1 N N N N N N -22.666 -9.412 9.876 -1.708 2.473 1.289 C17 XM8 4 XM8 O19 O1 O 0 1 N N N N N N -23.018 -9.405 8.664 -2.897 2.225 1.345 O19 XM8 5 XM8 C20 C5 C 0 1 Y N N N N N -22.132 -11.959 10.088 -1.185 0.432 -0.117 C20 XM8 6 XM8 C21 C6 C 0 1 Y N N N N N -21.678 -12.321 8.661 -2.552 -0.122 -0.224 C21 XM8 7 XM8 C25 C7 C 0 1 Y N N N N N -20.814 -12.960 6.115 -5.112 -1.160 -0.425 C25 XM8 8 XM8 C26 C8 C 0 1 N N N N N N -20.301 -13.275 4.686 -6.505 -1.726 -0.534 C26 XM8 9 XM8 C28 C9 C 0 1 N N N N N N -18.221 -14.627 3.098 -9.097 -1.954 0.547 C28 XM8 10 XM8 C01 C10 C 0 1 N N N N N N -22.296 -12.163 15.899 3.602 2.512 -1.389 C01 XM8 11 XM8 C02 C11 C 0 1 N N S N N N -23.306 -12.050 14.744 3.521 1.362 -0.383 C02 XM8 12 XM8 C04 C12 C 0 1 N N N N N N -25.633 -12.244 14.348 5.725 1.111 0.526 C04 XM8 13 XM8 C05 C13 C 0 1 Y N N N N N -26.868 -13.008 14.849 6.971 0.269 0.425 C05 XM8 14 XM8 C06 C14 C 0 1 Y N N N N N -26.729 -14.145 15.615 7.112 -0.855 1.217 C06 XM8 15 XM8 C07 C15 C 0 1 Y N N N N N -27.855 -14.828 16.052 8.254 -1.627 1.124 C07 XM8 16 XM8 C08 C16 C 0 1 Y N N N N N -29.118 -14.375 15.714 9.257 -1.275 0.240 C08 XM8 17 XM8 C09 C17 C 0 1 N N N N N N -30.342 -15.116 16.207 10.500 -2.120 0.135 C09 XM8 18 XM8 C14 C18 C 0 1 Y N N N N N -22.642 -12.182 12.265 1.088 0.735 -0.336 C14 XM8 19 XM8 C16 C19 C 0 1 Y N N N N N -22.523 -10.730 10.601 -0.807 1.582 0.553 C16 XM8 20 XM8 C22 C20 C 0 1 Y N N N N N -20.703 -11.554 8.081 -3.544 0.587 -0.904 C22 XM8 21 XM8 C23 C21 C 0 1 Y N N N N N -20.301 -11.883 6.817 -4.818 0.064 -1.001 C23 XM8 22 XM8 C31 C22 C 0 1 Y N N N N N -21.794 -13.742 6.712 -4.132 -1.869 0.245 C31 XM8 23 XM8 C32 C23 C 0 1 Y N N N N N -22.222 -13.412 8.000 -2.855 -1.357 0.349 C32 XM8 24 XM8 C33 C24 C 0 1 Y N N N N N -22.204 -12.882 11.143 0.039 -0.129 -0.701 C33 XM8 25 XM8 C34 C25 C 0 1 Y N N N N N -21.925 -14.248 11.211 0.305 -1.260 -1.477 C34 XM8 26 XM8 C35 C26 C 0 1 Y N N N N N -22.110 -14.904 12.429 1.584 -1.523 -1.878 C35 XM8 27 XM8 C36 C27 C 0 1 Y N N N N N -22.562 -14.204 13.561 2.623 -0.674 -1.521 C36 XM8 28 XM8 N10 N1 N 0 1 N N N N N N -30.591 -14.663 17.547 11.509 -1.626 1.081 N10 XM8 29 XM8 N15 N2 N 0 1 Y N N N N N -22.813 -10.891 11.899 0.555 1.755 0.417 N15 XM8 30 XM8 O03 O2 O 0 1 N N N N N N -24.552 -12.533 15.215 4.748 0.629 -0.399 O03 XM8 31 XM8 O18 O3 O 0 1 N N N N N N -22.513 -8.348 10.535 -1.218 3.569 1.905 O18 XM8 32 XM8 O29 O4 O 0 1 N N N N N N -19.467 -15.812 5.250 -6.951 -1.738 2.065 O29 XM8 33 XM8 O30 O5 O 0 1 N N N N N N -17.894 -14.189 5.683 -7.655 0.239 0.797 O30 XM8 34 XM8 S27 S1 S 0 1 N N N N N N -18.981 -14.533 4.758 -7.495 -1.171 0.881 S27 XM8 35 XM8 CL24 CL1 CL 0 0 N N N N N N -19.077 -10.873 6.101 -6.054 0.944 -1.846 CL24 XM8 36 XM8 H111 H1 H 0 0 N N N N N N -30.244 -12.856 14.710 9.896 0.121 -1.248 H111 XM8 37 XM8 H121 H2 H 0 0 N N N N N N -28.239 -11.657 13.927 7.862 1.498 -1.080 H121 XM8 38 XM8 H261 H3 H 0 0 N N N N N N -19.903 -12.356 4.231 -6.966 -1.379 -1.459 H261 XM8 39 XM8 H262 H4 H 0 0 N N N N N N -21.134 -13.655 4.076 -6.456 -2.815 -0.539 H262 XM8 40 XM8 H281 H5 H 0 0 N N N N N N -17.418 -15.378 3.104 -8.972 -3.036 0.511 H281 XM8 41 XM8 H283 H6 H 0 0 N N N N N N -18.985 -14.913 2.361 -9.800 -1.696 1.340 H283 XM8 42 XM8 H282 H7 H 0 0 N N N N N N -17.803 -13.645 2.830 -9.482 -1.601 -0.409 H282 XM8 43 XM8 H011 H8 H 0 0 N N N N N N -22.662 -11.591 16.764 3.773 2.111 -2.388 H011 XM8 44 XM8 H012 H9 H 0 0 N N N N N N -22.179 -13.220 16.181 2.667 3.072 -1.377 H012 XM8 45 XM8 H013 H10 H 0 0 N N N N N N -21.325 -11.759 15.577 4.424 3.174 -1.118 H013 XM8 46 XM8 H021 H11 H 0 0 N N N N N N -23.395 -10.990 14.463 3.351 1.764 0.615 H021 XM8 47 XM8 H041 H12 H 0 0 N N N N N N -25.386 -12.565 13.325 5.327 1.051 1.539 H041 XM8 48 XM8 H042 H13 H 0 0 N N N N N N -25.836 -11.163 14.354 5.967 2.148 0.291 H042 XM8 49 XM8 H061 H14 H 0 0 N N N N N N -25.744 -14.504 15.875 6.329 -1.129 1.909 H061 XM8 50 XM8 H071 H15 H 0 0 N N N N N N -27.745 -15.716 16.658 8.365 -2.505 1.744 H071 XM8 51 XM8 H092 H16 H 0 0 N N N N N N -31.206 -14.890 15.564 10.256 -3.156 0.371 H092 XM8 52 XM8 H091 H17 H 0 0 N N N N N N -30.155 -16.200 16.202 10.894 -2.062 -0.880 H091 XM8 53 XM8 H221 H18 H 0 0 N N N N N N -20.266 -10.717 8.605 -3.316 1.543 -1.353 H221 XM8 54 XM8 H311 H19 H 0 0 N N N N N N -22.217 -14.588 6.191 -4.367 -2.824 0.692 H311 XM8 55 XM8 H321 H20 H 0 0 N N N N N N -22.981 -14.010 8.484 -2.090 -1.913 0.872 H321 XM8 56 XM8 H341 H21 H 0 0 N N N N N N -21.574 -14.785 10.342 -0.498 -1.925 -1.758 H341 XM8 57 XM8 H351 H22 H 0 0 N N N N N N -21.903 -15.962 12.503 1.788 -2.398 -2.478 H351 XM8 58 XM8 H361 H23 H 0 0 N N N N N N -22.703 -14.732 14.492 3.628 -0.893 -1.849 H361 XM8 59 XM8 H102 H24 H 0 0 N N N N N N -31.396 -15.130 17.913 12.353 -2.177 1.030 H102 XM8 60 XM8 H101 H26 H 0 0 N N N N N N -29.798 -14.867 18.121 11.705 -0.649 0.924 H101 XM8 61 XM8 H151 H27 H 0 0 N N N N N N -23.114 -10.160 12.511 1.063 2.489 0.797 H151 XM8 62 XM8 H2 H28 H 0 1 N N N N N N -22.701 -7.601 9.979 -1.888 4.094 2.364 H2 XM8 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XM8 C28 S27 SING N N 1 XM8 C26 S27 SING N N 2 XM8 C26 C25 SING N N 3 XM8 S27 O29 DOUB N N 4 XM8 S27 O30 DOUB N N 5 XM8 CL24 C23 SING N N 6 XM8 C25 C31 DOUB Y N 7 XM8 C25 C23 SING Y N 8 XM8 C31 C32 SING Y N 9 XM8 C23 C22 DOUB Y N 10 XM8 C32 C21 DOUB Y N 11 XM8 C22 C21 SING Y N 12 XM8 C21 C20 SING N N 13 XM8 O19 C17 DOUB N N 14 XM8 C17 O18 SING N N 15 XM8 C17 C16 SING N N 16 XM8 C20 C16 DOUB Y N 17 XM8 C20 C33 SING Y N 18 XM8 C16 N15 SING Y N 19 XM8 C33 C34 DOUB Y N 20 XM8 C33 C14 SING Y N 21 XM8 C34 C35 SING Y N 22 XM8 N15 C14 SING Y N 23 XM8 C14 C13 DOUB Y N 24 XM8 C35 C36 DOUB Y N 25 XM8 C13 C36 SING Y N 26 XM8 C13 C02 SING N N 27 XM8 C04 C05 SING N N 28 XM8 C04 O03 SING N N 29 XM8 C12 C05 DOUB Y N 30 XM8 C12 C11 SING Y N 31 XM8 C02 O03 SING N N 32 XM8 C02 C01 SING N N 33 XM8 C05 C06 SING Y N 34 XM8 C11 C08 DOUB Y N 35 XM8 C06 C07 DOUB Y N 36 XM8 C08 C07 SING Y N 37 XM8 C08 C09 SING N N 38 XM8 C09 N10 SING N N 39 XM8 C11 H111 SING N N 40 XM8 C12 H121 SING N N 41 XM8 C26 H261 SING N N 42 XM8 C26 H262 SING N N 43 XM8 C28 H281 SING N N 44 XM8 C28 H283 SING N N 45 XM8 C28 H282 SING N N 46 XM8 C01 H011 SING N N 47 XM8 C01 H012 SING N N 48 XM8 C01 H013 SING N N 49 XM8 C02 H021 SING N N 50 XM8 C04 H041 SING N N 51 XM8 C04 H042 SING N N 52 XM8 C06 H061 SING N N 53 XM8 C07 H071 SING N N 54 XM8 C09 H092 SING N N 55 XM8 C09 H091 SING N N 56 XM8 C22 H221 SING N N 57 XM8 C31 H311 SING N N 58 XM8 C32 H321 SING N N 59 XM8 C34 H341 SING N N 60 XM8 C35 H351 SING N N 61 XM8 C36 H361 SING N N 62 XM8 N10 H102 SING N N 63 XM8 N10 H101 SING N N 64 XM8 N15 H151 SING N N 65 XM8 O18 H2 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XM8 InChI InChI 1.06 "InChI=1S/C27H27ClN2O5S/c1-16(35-14-18-8-6-17(13-29)7-9-18)21-4-3-5-22-24(26(27(31)32)30-25(21)22)19-10-11-20(23(28)12-19)15-36(2,33)34/h3-12,16,30H,13-15,29H2,1-2H3,(H,31,32)/t16-/m0/s1" XM8 InChIKey InChI 1.06 JCXDRPGSXCBCFR-INIZCTEOSA-N XM8 SMILES_CANONICAL CACTVS 3.385 "C[C@H](OCc1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4" XM8 SMILES CACTVS 3.385 "C[CH](OCc1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4" XM8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)OCc4ccc(cc4)CN" XM8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)OCc4ccc(cc4)CN" # _pdbx_chem_comp_identifier.comp_id XM8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[[4-(aminomethyl)phenyl]methoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XM8 "Create component" 2023-06-08 PDBE XM8 "Initial release" 2024-06-26 RCSB #