data_XMP
#

_chem_comp.id                                   XMP
_chem_comp.name                                 "XANTHOSINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N4 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    1999-07-12
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       365.213
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XMP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1QK5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XMP  P       P       P  0  1  N  N  N  26.094  44.979  61.192   5.080   0.916   0.179  P       XMP   1  
XMP  O1P     O1P     O  0  1  N  N  N  25.219  46.179  61.310   5.464   1.919   1.379  O1P     XMP   2  
XMP  O2P     O2P     O  0  1  N  N  N  27.503  45.102  60.830   6.254  -0.170  -0.009  O2P     XMP   3  
XMP  "O5'"   "O5'"   O  0  1  N  N  N  25.411  43.920  60.198   3.702   0.162   0.531  "O5'"   XMP   4  
XMP  O3P     O3P     O  0  1  N  N  N  25.957  44.296  62.525   4.916   1.686  -1.074  O3P     XMP   5  
XMP  "C5'"   "C5'"   C  0  1  N  N  N  24.030  44.158  59.982   3.041  -0.718  -0.381  "C5'"   XMP   6  
XMP  "C4'"   "C4'"   C  0  1  N  N  R  23.192  42.953  60.249   1.766  -1.261   0.267  "C4'"   XMP   7  
XMP  "O4'"   "O4'"   O  0  1  N  N  N  22.052  42.947  59.349   0.824  -0.193   0.462  "O4'"   XMP   8  
XMP  "C1'"   "C1'"   C  0  1  N  N  R  22.490  42.199  58.205  -0.493  -0.754   0.278  "C1'"   XMP   9  
XMP  N9      N9      N  0  1  Y  N  N  22.375  43.187  57.149  -1.461   0.297  -0.045  N9      XMP  10  
XMP  C4      C4      C  0  1  Y  N  N  21.623  43.108  56.018  -2.805   0.239   0.150  C4      XMP  11  
XMP  N3      N3      N  0  1  N  N  N  20.848  42.083  55.667  -3.664  -0.707   0.662  N3      XMP  12  
XMP  N1      N1      N  0  1  N  N  N  20.380  43.408  53.812  -5.532   0.682   0.309  N1      XMP  13  
XMP  C2      C2      C  0  1  N  N  N  20.210  42.244  54.501  -4.986  -0.471   0.730  C2      XMP  14  
XMP  O2      O2      O  0  1  N  N  N  19.456  41.368  54.083  -5.712  -1.332   1.188  O2      XMP  15  
XMP  C6      C6      C  0  1  N  N  N  21.187  44.492  54.152  -4.764   1.666  -0.206  C6      XMP  16  
XMP  O6      O6      O  0  1  N  N  N  21.223  45.473  53.409  -5.262   2.710  -0.587  O6      XMP  17  
XMP  C5      C5      C  0  1  Y  N  N  21.831  44.314  55.369  -3.319   1.449  -0.298  C5      XMP  18  
XMP  N7      N7      N  1  1  Y  N  N  22.714  45.112  56.087  -2.278   2.191  -0.746  N7      XMP  19  
XMP  C8      C8      C  0  1  Y  N  N  22.999  44.402  57.145  -1.176   1.514  -0.592  C8      XMP  20  
XMP  "C2'"   "C2'"   C  0  1  N  N  R  23.918  41.745  58.500  -0.311  -1.717  -0.923  "C2'"   XMP  21  
XMP  "O2'"   "O2'"   O  0  1  N  N  N  24.205  40.545  57.868  -1.295  -2.753  -0.900  "O2'"   XMP  22  
XMP  "C3'"   "C3'"   C  0  1  N  N  S  23.778  41.576  59.994   1.103  -2.292  -0.667  "C3'"   XMP  23  
XMP  "O3'"   "O3'"   O  0  1  N  N  N  22.857  40.513  60.415   1.016  -3.565  -0.024  "O3'"   XMP  24  
XMP  HOP1    HOP1    H  0  0  N  N  N  25.033  46.347  62.226   6.286   2.408   1.235  HOP1    XMP  25  
XMP  HOP2    HOP2    H  0  0  N  N  N  27.586  45.129  59.884   6.417  -0.712   0.775  HOP2    XMP  26  
XMP  "H5'2"  "H5'2"  H  0  0  N  N  N  23.706  44.964  60.657   2.784  -0.172  -1.289  "H5'2"  XMP  27  
XMP  "H5'1"  "H5'1"  H  0  0  N  N  N  23.898  44.430  58.924   3.704  -1.546  -0.631  "H5'1"  XMP  28  
XMP  "H4'"   "H4'"   H  0  1  N  N  N  23.010  43.068  61.328   2.006  -1.724   1.224  "H4'"   XMP  29  
XMP  "H1'"   "H1'"   H  0  1  N  N  N  21.935  41.287  57.941  -0.805  -1.301   1.168  "H1'"   XMP  30  
XMP  H3      H3      H  0  1  N  N  N  20.751  41.261  56.228  -3.311  -1.554   0.976  H3      XMP  31  
XMP  H1      H1      H  0  1  N  N  N  19.863  43.494  52.960  -6.491   0.809   0.377  H1      XMP  32  
XMP  H7      H7      H  0  1  N  N  N  23.053  46.022  55.848  -2.342   3.084  -1.118  H7      XMP  33  
XMP  H8      H8      H  0  1  N  N  N  23.657  44.739  57.932  -0.189   1.862  -0.860  H8      XMP  34  
XMP  "H2'"   "H2'"   H  0  1  N  N  N  24.725  42.414  58.165  -0.345  -1.172  -1.867  "H2'"   XMP  35  
XMP  H2O1    H2O1    H  0  0  N  N  N  24.271  40.688  56.931  -1.223  -3.381  -1.632  H2O1    XMP  36  
XMP  "H3'"   "H3'"   H  0  1  N  N  N  24.695  41.282  60.526   1.657  -2.373  -1.602  "H3'"   XMP  37  
XMP  H3O1    H3O1    H  0  0  N  N  N  22.658  39.954  59.673   0.606  -4.253  -0.566  H3O1    XMP  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XMP  P      O1P     SING  N  N   1  
XMP  P      O2P     SING  N  N   2  
XMP  P      "O5'"   SING  N  N   3  
XMP  P      O3P     DOUB  N  N   4  
XMP  O1P    HOP1    SING  N  N   5  
XMP  O2P    HOP2    SING  N  N   6  
XMP  "O5'"  "C5'"   SING  N  N   7  
XMP  "C5'"  "C4'"   SING  N  N   8  
XMP  "C5'"  "H5'2"  SING  N  N   9  
XMP  "C5'"  "H5'1"  SING  N  N  10  
XMP  "C4'"  "O4'"   SING  N  N  11  
XMP  "C4'"  "C3'"   SING  N  N  12  
XMP  "C4'"  "H4'"   SING  N  N  13  
XMP  "O4'"  "C1'"   SING  N  N  14  
XMP  "C1'"  N9      SING  N  N  15  
XMP  "C1'"  "C2'"   SING  N  N  16  
XMP  "C1'"  "H1'"   SING  N  N  17  
XMP  N9     C4      SING  Y  N  18  
XMP  N9     C8      SING  Y  N  19  
XMP  C4     N3      SING  N  N  20  
XMP  C4     C5      DOUB  Y  N  21  
XMP  N3     C2      SING  N  N  22  
XMP  N3     H3      SING  N  N  23  
XMP  N1     C2      SING  N  N  24  
XMP  N1     C6      SING  N  N  25  
XMP  N1     H1      SING  N  N  26  
XMP  C2     O2      DOUB  N  N  27  
XMP  C6     O6      DOUB  N  N  28  
XMP  C6     C5      SING  N  N  29  
XMP  C5     N7      SING  Y  N  30  
XMP  N7     C8      DOUB  Y  N  31  
XMP  N7     H7      SING  N  N  32  
XMP  C8     H8      SING  N  N  33  
XMP  "C2'"  "O2'"   SING  N  N  34  
XMP  "C2'"  "C3'"   SING  N  N  35  
XMP  "C2'"  "H2'"   SING  N  N  36  
XMP  "O2'"  H2O1    SING  N  N  37  
XMP  "C3'"  "O3'"   SING  N  N  38  
XMP  "C3'"  "H3'"   SING  N  N  39  
XMP  "O3'"  H3O1    SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XMP  SMILES            ACDLabs               10.04  "O=C3Nc1c([nH+]cn1C2OC(C(O)C2O)COP(=O)(O)O)C(=O)N3"  
XMP  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2c[nH+]c3C(=O)NC(=O)Nc23"  
XMP  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2c[nH+]c3C(=O)NC(=O)Nc23"  
XMP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1[nH+]c2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)NC(=O)NC2=O"  
XMP  SMILES            "OpenEye OEToolkits"  1.5.0  "c1[nH+]c2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)NC(=O)NC2=O"  
XMP  InChI             InChI                 1.03   "InChI=1S/C10H13N4O9P/c15-5-3(1-22-24(19,20)21)23-9(6(5)16)14-2-11-4-7(14)12-10(18)13-8(4)17/h2-3,5-6,9,15-16H,1H2,(H2,19,20,21)(H2,12,13,17,18)/p+1/t3-,5-,6-,9-/m1/s1"  
XMP  InChIKey          InChI                 1.03   DCTLYFZHFGENCW-UUOKFMHZSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XMP  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-xanthylic acid"  
XMP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(2,6-dioxo-3H-purin-7-ium-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XMP  "Create component"   1999-07-12  RCSB  
XMP  "Modify descriptor"  2011-06-04  RCSB  
XMP  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     XMP
_pdbx_chem_comp_synonyms.name        "5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##