data_XMU # _chem_comp.id XMU _chem_comp.name "7-[(1~{S})-1-[[4-(aminomethyl)phenyl]carbonylamino]ethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H31 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-06-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 513.588 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XMU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PAD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XMU C10 C1 C 0 1 N N N N N N -30.626 -14.963 16.288 9.810 2.839 -0.537 C10 XMU 1 XMU C12 C2 C 0 1 Y N N N N N -29.364 -13.248 14.903 8.778 0.566 -0.718 C12 XMU 2 XMU C13 C3 C 0 1 Y N N N N N -28.173 -12.662 14.402 7.725 -0.306 -0.540 C13 XMU 3 XMU C14 C4 C 0 1 Y N N N N N -22.735 -12.884 13.357 1.828 -0.483 0.905 C14 XMU 4 XMU C15 C5 C 0 1 Y N N N N N -22.484 -14.253 13.398 1.804 0.844 1.270 C15 XMU 5 XMU C16 C6 C 0 1 Y N N N N N -21.935 -14.936 12.284 0.618 1.566 1.239 C16 XMU 6 XMU C17 C7 C 0 1 Y N N N N N -21.626 -14.292 11.113 -0.546 0.970 0.846 C17 XMU 7 XMU C01 C8 C 0 1 N N N N N N -22.360 -12.289 15.768 3.261 -1.950 2.300 C01 XMU 8 XMU C02 C9 C 0 1 N N S N N N -23.279 -12.095 14.583 3.122 -1.254 0.944 C02 XMU 9 XMU C04 C10 C 0 1 N N N N N N -25.652 -12.300 14.266 5.397 -0.778 0.213 C04 XMU 10 XMU C06 C11 C 0 1 Y N N N N N -26.937 -13.041 14.869 6.530 0.152 0.018 C06 XMU 11 XMU C07 C12 C 0 1 Y N N N N N -26.884 -14.106 15.849 6.410 1.491 0.393 C07 XMU 12 XMU C08 C13 C 0 1 Y N N N N N -28.052 -14.743 16.276 7.471 2.353 0.209 C08 XMU 13 XMU C09 C14 C 0 1 Y N N N N N -29.311 -14.320 15.821 8.653 1.893 -0.345 C09 XMU 14 XMU C18 C15 C 0 1 Y N N N N N -21.912 -12.920 11.004 -0.546 -0.375 0.472 C18 XMU 15 XMU C19 C16 C 0 1 Y N N N N N -21.834 -11.976 9.921 -1.590 -1.298 0.011 C19 XMU 16 XMU C20 C17 C 0 1 Y N N N N N -21.316 -12.206 8.607 -3.024 -0.987 -0.183 C20 XMU 17 XMU C21 C18 C 0 1 Y N N N N N -20.363 -11.366 8.000 -3.999 -1.605 0.608 C21 XMU 18 XMU C22 C19 C 0 1 Y N N N N N -19.874 -11.621 6.738 -5.326 -1.280 0.387 C22 XMU 19 XMU C23 C20 C 0 1 Y N N N N N -20.385 -12.712 6.038 -5.643 -0.364 -0.600 C23 XMU 20 XMU C24 C21 C 0 1 N N N N N N -19.905 -13.032 4.655 -7.087 -0.013 -0.849 C24 XMU 21 XMU C26 C22 C 0 1 N N N N N N -19.501 -15.353 4.609 -6.699 2.368 -0.626 C26 XMU 22 XMU C27 C23 C 0 1 N N N N N N -18.475 -16.476 4.528 -7.039 3.600 0.216 C27 XMU 23 XMU C29 C24 C 0 1 N N N N N N -17.219 -15.126 3.079 -9.199 2.690 0.710 C29 XMU 24 XMU C30 C25 C 0 1 N N N N N N -18.252 -14.013 3.275 -8.880 1.447 -0.127 C30 XMU 25 XMU C32 C26 C 0 1 Y N N N N N -21.750 -13.261 7.849 -3.425 -0.070 -1.154 C32 XMU 26 XMU C33 C27 C 0 1 Y N N N N N -22.279 -10.759 10.477 -0.970 -2.515 -0.206 C33 XMU 27 XMU C34 C28 C 0 1 N N N N N N -22.506 -9.468 9.812 -1.631 -3.736 -0.675 C34 XMU 28 XMU C38 C29 C 0 1 Y N N N N N -22.426 -12.238 12.134 0.652 -1.114 0.506 C38 XMU 29 XMU N03 N1 N 0 1 N N N N N N -24.557 -12.596 14.984 4.245 -0.333 0.752 N03 XMU 30 XMU N11 N2 N 0 1 N N N N N N -31.382 -14.111 17.172 9.720 3.459 -1.866 N11 XMU 31 XMU N25 N3 N 0 1 N N N N N N -18.907 -14.051 4.530 -7.430 1.205 -0.102 N25 XMU 32 XMU N31 N4 N 0 1 Y N N N N N -21.294 -13.536 6.588 -4.702 0.203 -1.331 N31 XMU 33 XMU N37 N5 N 0 1 Y N N N N N -22.589 -10.912 11.793 0.373 -2.394 0.090 N37 XMU 34 XMU O05 O1 O 0 1 N N N N N N -25.528 -11.646 13.204 5.505 -1.944 -0.114 O05 XMU 35 XMU O28 O2 O 0 1 N N N N N N -17.769 -16.432 3.293 -8.455 3.803 0.206 O28 XMU 36 XMU O35 O3 O 0 1 N N N N N N -22.924 -9.481 8.619 -2.825 -3.730 -0.908 O35 XMU 37 XMU O36 O4 O 0 1 N N N N N N -22.403 -8.404 10.483 -0.915 -4.866 -0.850 O36 XMU 38 XMU H101 H1 H 0 0 N N N N N N -31.241 -15.186 15.404 9.776 3.614 0.228 H101 XMU 39 XMU H102 H2 H 0 0 N N N N N N -30.391 -15.898 16.817 10.747 2.288 -0.456 H102 XMU 40 XMU H121 H3 H 0 0 N N N N N N -30.322 -12.870 14.579 9.705 0.212 -1.146 H121 XMU 41 XMU H131 H4 H 0 0 N N N N N N -28.239 -11.902 13.637 7.824 -1.341 -0.832 H131 XMU 42 XMU H151 H5 H 0 0 N N N N N N -22.712 -14.806 14.297 2.717 1.329 1.583 H151 XMU 43 XMU H161 H6 H 0 0 N N N N N N -21.754 -15.998 12.360 0.617 2.607 1.528 H161 XMU 44 XMU H171 H7 H 0 0 N N N N N N -21.173 -14.828 10.292 -1.465 1.538 0.825 H171 XMU 45 XMU H012 H8 H 0 0 N N N N N N -22.750 -11.729 16.631 4.197 -2.508 2.328 H012 XMU 46 XMU H013 H9 H 0 0 N N N N N N -22.307 -13.359 16.019 3.258 -1.203 3.094 H013 XMU 47 XMU H011 H10 H 0 0 N N N N N N -21.355 -11.921 15.516 2.425 -2.636 2.443 H011 XMU 48 XMU H021 H11 H 0 0 N N N N N N -23.337 -11.026 14.328 3.125 -2.001 0.150 H021 XMU 49 XMU H071 H12 H 0 0 N N N N N N -25.931 -14.411 16.254 5.489 1.852 0.825 H071 XMU 50 XMU H081 H13 H 0 0 N N N N N N -27.985 -15.572 16.965 7.380 3.390 0.498 H081 XMU 51 XMU H211 H14 H 0 0 N N N N N N -20.006 -10.500 8.538 -3.724 -2.317 1.372 H211 XMU 52 XMU H221 H15 H 0 0 N N N N N N -19.113 -10.991 6.302 -6.106 -1.737 0.978 H221 XMU 53 XMU H241 H16 H 0 0 N N N N N N -19.490 -12.108 4.226 -7.241 0.159 -1.915 H241 XMU 54 XMU H242 H17 H 0 0 N N N N N N -20.778 -13.350 4.066 -7.723 -0.834 -0.518 H242 XMU 55 XMU H262 H18 H 0 0 N N N N N N -20.212 -15.466 3.777 -6.989 2.544 -1.662 H262 XMU 56 XMU H261 H19 H 0 0 N N N N N N -20.039 -15.437 5.565 -5.627 2.177 -0.575 H261 XMU 57 XMU H272 H20 H 0 0 N N N N N N -18.992 -17.443 4.613 -6.701 3.445 1.241 H272 XMU 58 XMU H271 H21 H 0 0 N N N N N N -17.759 -16.370 5.356 -6.543 4.476 -0.202 H271 XMU 59 XMU H291 H22 H 0 0 N N N N N N -16.832 -15.071 2.051 -10.265 2.907 0.649 H291 XMU 60 XMU H292 H23 H 0 0 N N N N N N -16.394 -14.970 3.790 -8.923 2.509 1.749 H292 XMU 61 XMU H302 H24 H 0 0 N N N N N N -17.739 -13.044 3.181 -9.401 0.584 0.288 H302 XMU 62 XMU H301 H25 H 0 0 N N N N N N -19.012 -14.103 2.485 -9.204 1.608 -1.156 H301 XMU 63 XMU H321 H26 H 0 0 N N N N N N -22.498 -13.916 8.272 -2.684 0.418 -1.769 H321 XMU 64 XMU H031 H27 H 0 0 N N N N N N -24.635 -13.168 15.801 4.159 0.598 1.012 H031 XMU 65 XMU H112 H29 H 0 0 N N N N N N -32.224 -14.576 17.444 10.486 4.098 -2.020 H112 XMU 66 XMU H111 H30 H 0 0 N N N N N N -30.837 -13.906 17.985 9.684 2.757 -2.591 H111 XMU 67 XMU H371 H32 H 0 0 N N N N N N -22.886 -10.184 12.410 1.024 -3.109 0.018 H371 XMU 68 XMU H3 H33 H 0 1 N N N N N N -22.682 -7.667 9.953 -1.438 -5.618 -1.161 H3 XMU 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XMU C29 C30 SING N N 1 XMU C29 O28 SING N N 2 XMU C30 N25 SING N N 3 XMU O28 C27 SING N N 4 XMU C27 C26 SING N N 5 XMU N25 C26 SING N N 6 XMU N25 C24 SING N N 7 XMU C24 C23 SING N N 8 XMU C23 N31 DOUB Y N 9 XMU C23 C22 SING Y N 10 XMU N31 C32 SING Y N 11 XMU C22 C21 DOUB Y N 12 XMU C32 C20 DOUB Y N 13 XMU C21 C20 SING Y N 14 XMU C20 C19 SING N N 15 XMU O35 C34 DOUB N N 16 XMU C34 C33 SING N N 17 XMU C34 O36 SING N N 18 XMU C19 C33 DOUB Y N 19 XMU C19 C18 SING Y N 20 XMU C33 N37 SING Y N 21 XMU C18 C17 DOUB Y N 22 XMU C18 C38 SING Y N 23 XMU C17 C16 SING Y N 24 XMU N37 C38 SING Y N 25 XMU C38 C14 DOUB Y N 26 XMU C16 C15 DOUB Y N 27 XMU O05 C04 DOUB N N 28 XMU C14 C15 SING Y N 29 XMU C14 C02 SING N N 30 XMU C04 C06 SING N N 31 XMU C04 N03 SING N N 32 XMU C13 C06 DOUB Y N 33 XMU C13 C12 SING Y N 34 XMU C02 N03 SING N N 35 XMU C02 C01 SING N N 36 XMU C06 C07 SING Y N 37 XMU C12 C09 DOUB Y N 38 XMU C09 C08 SING Y N 39 XMU C09 C10 SING N N 40 XMU C07 C08 DOUB Y N 41 XMU C10 N11 SING N N 42 XMU C10 H101 SING N N 43 XMU C10 H102 SING N N 44 XMU C12 H121 SING N N 45 XMU C13 H131 SING N N 46 XMU C15 H151 SING N N 47 XMU C16 H161 SING N N 48 XMU C17 H171 SING N N 49 XMU C01 H012 SING N N 50 XMU C01 H013 SING N N 51 XMU C01 H011 SING N N 52 XMU C02 H021 SING N N 53 XMU C07 H071 SING N N 54 XMU C08 H081 SING N N 55 XMU C21 H211 SING N N 56 XMU C22 H221 SING N N 57 XMU C24 H241 SING N N 58 XMU C24 H242 SING N N 59 XMU C26 H262 SING N N 60 XMU C26 H261 SING N N 61 XMU C27 H272 SING N N 62 XMU C27 H271 SING N N 63 XMU C29 H291 SING N N 64 XMU C29 H292 SING N N 65 XMU C30 H302 SING N N 66 XMU C30 H301 SING N N 67 XMU C32 H321 SING N N 68 XMU N03 H031 SING N N 69 XMU N11 H112 SING N N 70 XMU N11 H111 SING N N 71 XMU N37 H371 SING N N 72 XMU O36 H3 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XMU InChI InChI 1.06 "InChI=1S/C29H31N5O4/c1-18(32-28(35)20-7-5-19(15-30)6-8-20)23-3-2-4-24-25(27(29(36)37)33-26(23)24)21-9-10-22(31-16-21)17-34-11-13-38-14-12-34/h2-10,16,18,33H,11-15,17,30H2,1H3,(H,32,35)(H,36,37)/t18-/m0/s1" XMU InChIKey InChI 1.06 FAKCBGHGOXLISH-SFHVURJKSA-N XMU SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(CN5CCOCC5)nc4" XMU SMILES CACTVS 3.385 "C[CH](NC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(CN5CCOCC5)nc4" XMU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)NC(=O)c5ccc(cc5)CN" XMU SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)NC(=O)c5ccc(cc5)CN" # _pdbx_chem_comp_identifier.comp_id XMU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[[4-(aminomethyl)phenyl]carbonylamino]ethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XMU "Create component" 2023-06-08 PDBE XMU "Initial release" 2024-06-26 RCSB #