data_XMY # _chem_comp.id XMY _chem_comp.name "(5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H28 Br F3 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-21 _chem_comp.pdbx_modified_date 2022-10-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.425 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XMY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L45 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XMY C10 C1 C 0 1 N N N -17.375 67.660 -0.267 1.138 2.738 -1.121 C10 XMY 1 XMY C13 C2 C 0 1 Y N N -15.564 66.916 -3.230 -1.699 1.895 -1.628 C13 XMY 2 XMY C20 C3 C 0 1 Y N N -13.622 68.073 0.481 -4.547 -1.222 -2.112 C20 XMY 3 XMY C21 C4 C 0 1 Y N N -13.808 69.180 1.273 -5.500 -1.755 -1.264 C21 XMY 4 XMY C22 C5 C 0 1 Y N N -14.117 70.366 0.704 -5.177 -2.031 0.052 C22 XMY 5 XMY C24 C6 C 0 1 Y N N -14.246 70.477 -0.684 -3.900 -1.774 0.519 C24 XMY 6 XMY C26 C7 C 0 1 Y N N -18.177 71.541 0.131 3.210 -0.152 0.108 C26 XMY 7 XMY C28 C8 C 0 1 Y N N -17.556 73.860 0.324 5.523 -0.788 0.198 C28 XMY 8 XMY C01 C9 C 0 1 N N N -22.686 68.927 -3.998 -2.698 5.281 3.463 C01 XMY 9 XMY C02 C10 C 0 1 N N N -21.680 68.554 -2.881 -2.069 3.887 3.443 C02 XMY 10 XMY C03 C11 C 0 1 N N N -20.237 68.792 -3.271 -1.058 3.800 2.298 C03 XMY 11 XMY C04 C12 C 0 1 N N N -19.260 67.978 -2.359 -0.429 2.406 2.278 C04 XMY 12 XMY C05 C13 C 0 1 N N S -17.772 68.599 -2.330 0.670 2.357 1.214 C05 XMY 13 XMY C06 C14 C 0 1 N N N -17.895 70.001 -1.860 1.344 0.984 1.235 C06 XMY 14 XMY C08 C15 C 0 1 N N N -17.667 69.046 0.462 2.134 1.619 -1.005 C08 XMY 15 XMY C12 C16 C 0 1 N N N -16.643 66.696 -2.097 -0.822 1.471 -0.478 C12 XMY 16 XMY C14 C17 C 0 1 Y N N -15.804 67.083 -4.566 -2.028 3.157 -1.964 C14 XMY 17 XMY C16 C18 C 0 1 Y N N -13.653 67.206 -4.244 -2.989 1.860 -3.395 C16 XMY 18 XMY C18 C19 C 0 1 N N N -13.527 66.871 -1.739 -2.232 -0.391 -2.572 C18 XMY 19 XMY C19 C20 C 0 1 Y N N -13.743 68.158 -0.888 -3.270 -0.971 -1.647 C19 XMY 20 XMY C25 C21 C 0 1 Y N N -14.054 69.366 -1.471 -2.948 -1.242 -0.330 C25 XMY 21 XMY C27 C22 C 0 1 Y N N -17.284 72.611 -0.154 4.551 0.200 0.164 C27 XMY 22 XMY C29 C23 C 0 1 Y N N -18.685 74.089 1.086 5.154 -2.125 0.176 C29 XMY 23 XMY C30 C24 C 0 1 Y N N -19.555 73.031 1.349 3.818 -2.474 0.121 C30 XMY 24 XMY C31 C25 C 0 1 Y N N -19.283 71.762 0.857 2.846 -1.493 0.087 C31 XMY 25 XMY C33 C26 C 0 1 N N N -15.953 75.018 -1.114 7.785 -1.515 0.284 C33 XMY 26 XMY F34 F1 F 0 1 N N N -15.176 76.135 -1.106 7.646 -2.296 -0.869 F34 XMY 27 XMY F35 F2 F 0 1 N N N -15.145 73.909 -1.211 7.556 -2.307 1.414 F35 XMY 28 XMY F36 F3 F 0 1 N N N -16.854 75.081 -2.130 9.080 -0.989 0.338 F36 XMY 29 XMY N07 N1 N 0 1 N N N -17.911 70.198 -0.405 2.226 0.842 0.079 N07 XMY 30 XMY N11 N2 N 0 1 N N N -16.921 67.827 -1.540 0.079 2.573 -0.116 N11 XMY 31 XMY N15 N3 N 0 1 Y N N -14.623 67.255 -5.178 -2.817 3.106 -3.047 N15 XMY 32 XMY N17 N4 N 0 1 Y N N -14.236 66.995 -3.049 -2.309 1.072 -2.536 N17 XMY 33 XMY O09 O1 O 0 1 N N N -17.652 69.150 1.599 2.887 1.412 -1.933 O09 XMY 34 XMY O32 O2 O 0 1 N N N -16.677 74.987 0.104 6.838 -0.446 0.252 O32 XMY 35 XMY BR23 BR1 BR 0 0 N N N -14.367 71.884 1.888 -6.480 -2.759 1.213 BR23 XMY 36 XMY H1 H1 H 0 1 N N N -18.306 67.075 -0.298 1.643 3.691 -0.961 H1 XMY 37 XMY H2 H2 H 0 1 N N N -16.616 67.111 0.309 0.695 2.726 -2.117 H2 XMY 38 XMY H3 H3 H 0 1 N N N -13.378 67.125 0.937 -4.799 -1.007 -3.140 H3 XMY 39 XMY H4 H4 H 0 1 N N N -13.708 69.103 2.346 -6.497 -1.955 -1.629 H4 XMY 40 XMY H5 H5 H 0 1 N N N -14.494 71.427 -1.134 -3.648 -1.989 1.547 H5 XMY 41 XMY H6 H6 H 0 1 N N N -23.711 68.730 -3.650 -1.919 6.029 3.609 H6 XMY 42 XMY H7 H7 H 0 1 N N N -22.581 69.994 -4.245 -3.205 5.465 2.516 H7 XMY 43 XMY H8 H8 H 0 1 N N N -22.481 68.322 -4.893 -3.419 5.343 4.279 H8 XMY 44 XMY H9 H9 H 0 1 N N N -21.906 69.160 -1.991 -1.562 3.703 4.390 H9 XMY 45 XMY H10 H10 H 0 1 N N N -21.805 67.488 -2.640 -2.848 3.139 3.297 H10 XMY 46 XMY H11 H11 H 0 1 N N N -20.093 68.483 -4.317 -1.565 3.984 1.351 H11 XMY 47 XMY H12 H12 H 0 1 N N N -20.011 69.864 -3.171 -0.279 4.548 2.444 H12 XMY 48 XMY H13 H13 H 0 1 N N N -19.659 67.972 -1.334 0.002 2.187 3.255 H13 XMY 49 XMY H14 H14 H 0 1 N N N -19.203 66.946 -2.737 -1.194 1.665 2.044 H14 XMY 50 XMY H15 H15 H 0 1 N N N -17.408 68.609 -3.368 1.410 3.131 1.418 H15 XMY 51 XMY H16 H16 H 0 1 N N N -17.044 70.567 -2.266 1.927 0.881 2.150 H16 XMY 52 XMY H17 H17 H 0 1 N N N -18.833 70.409 -2.264 0.581 0.206 1.205 H17 XMY 53 XMY H18 H18 H 0 1 N N N -17.556 66.271 -2.539 -1.446 1.216 0.379 H18 XMY 54 XMY H19 H19 H 0 1 N N N -16.244 66.003 -1.341 -0.234 0.602 -0.771 H19 XMY 55 XMY H20 H20 H 0 1 N N N -16.773 67.077 -5.044 -1.712 4.053 -1.451 H20 XMY 56 XMY H21 H21 H 0 1 N N N -12.594 67.317 -4.423 -3.579 1.516 -4.233 H21 XMY 57 XMY H22 H22 H 0 1 N N N -13.923 66.003 -1.192 -1.240 -0.711 -2.251 H22 XMY 58 XMY H23 H23 H 0 1 N N N -12.451 66.731 -1.920 -2.415 -0.739 -3.588 H23 XMY 59 XMY H24 H24 H 0 1 N N N -14.147 69.441 -2.544 -1.953 -1.036 0.036 H24 XMY 60 XMY H25 H25 H 0 1 N N N -16.397 72.436 -0.745 4.837 1.241 0.180 H25 XMY 61 XMY H26 H26 H 0 1 N N N -18.892 75.076 1.474 5.911 -2.894 0.203 H26 XMY 62 XMY H27 H27 H 0 1 N N N -20.444 73.200 1.938 3.533 -3.515 0.105 H27 XMY 63 XMY H28 H28 H 0 1 N N N -19.965 70.949 1.060 1.803 -1.768 0.045 H28 XMY 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XMY N15 C14 SING Y N 1 XMY N15 C16 DOUB Y N 2 XMY C14 C13 DOUB Y N 3 XMY C16 N17 SING Y N 4 XMY C01 C02 SING N N 5 XMY C03 C02 SING N N 6 XMY C03 C04 SING N N 7 XMY C13 N17 SING Y N 8 XMY C13 C12 SING N N 9 XMY N17 C18 SING N N 10 XMY C04 C05 SING N N 11 XMY C05 C06 SING N N 12 XMY C05 N11 SING N N 13 XMY F36 C33 SING N N 14 XMY C12 N11 SING N N 15 XMY C06 N07 SING N N 16 XMY C18 C19 SING N N 17 XMY N11 C10 SING N N 18 XMY C25 C19 DOUB Y N 19 XMY C25 C24 SING Y N 20 XMY F35 C33 SING N N 21 XMY C33 F34 SING N N 22 XMY C33 O32 SING N N 23 XMY C19 C20 SING Y N 24 XMY C24 C22 DOUB Y N 25 XMY N07 C26 SING N N 26 XMY N07 C08 SING N N 27 XMY C10 C08 SING N N 28 XMY C27 C26 DOUB Y N 29 XMY C27 C28 SING Y N 30 XMY O32 C28 SING N N 31 XMY C26 C31 SING Y N 32 XMY C28 C29 DOUB Y N 33 XMY C08 O09 DOUB N N 34 XMY C20 C21 DOUB Y N 35 XMY C22 C21 SING Y N 36 XMY C22 BR23 SING N N 37 XMY C31 C30 DOUB Y N 38 XMY C29 C30 SING Y N 39 XMY C10 H1 SING N N 40 XMY C10 H2 SING N N 41 XMY C20 H3 SING N N 42 XMY C21 H4 SING N N 43 XMY C24 H5 SING N N 44 XMY C01 H6 SING N N 45 XMY C01 H7 SING N N 46 XMY C01 H8 SING N N 47 XMY C02 H9 SING N N 48 XMY C02 H10 SING N N 49 XMY C03 H11 SING N N 50 XMY C03 H12 SING N N 51 XMY C04 H13 SING N N 52 XMY C04 H14 SING N N 53 XMY C05 H15 SING N N 54 XMY C06 H16 SING N N 55 XMY C06 H17 SING N N 56 XMY C12 H18 SING N N 57 XMY C12 H19 SING N N 58 XMY C14 H20 SING N N 59 XMY C16 H21 SING N N 60 XMY C18 H22 SING N N 61 XMY C18 H23 SING N N 62 XMY C25 H24 SING N N 63 XMY C27 H25 SING N N 64 XMY C29 H26 SING N N 65 XMY C30 H27 SING N N 66 XMY C31 H28 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XMY SMILES ACDLabs 12.01 "C2C(=O)N(c1cccc(c1)OC(F)(F)F)CC(CCCC)N2Cc3n(cnc3)Cc4ccc(Br)cc4" XMY InChI InChI 1.03 "InChI=1S/C26H28BrF3N4O2/c1-2-3-5-22-16-34(21-6-4-7-24(12-21)36-26(28,29)30)25(35)17-32(22)15-23-13-31-18-33(23)14-19-8-10-20(27)11-9-19/h4,6-13,18,22H,2-3,5,14-17H2,1H3/t22-/m0/s1" XMY InChIKey InChI 1.03 GQAHQWQDBPUSHR-QFIPXVFZSA-N XMY SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(Br)cc3)c4cccc(OC(F)(F)F)c4" XMY SMILES CACTVS 3.385 "CCCC[CH]1CN(C(=O)CN1Cc2cncn2Cc3ccc(Br)cc3)c4cccc(OC(F)(F)F)c4" XMY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)Br)c4cccc(c4)OC(F)(F)F" XMY SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)Br)c4cccc(c4)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XMY "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one" XMY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{S})-4-[[3-[(4-bromophenyl)methyl]imidazol-4-yl]methyl]-5-butyl-1-[3-(trifluoromethyloxy)phenyl]piperazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XMY "Create component" 2020-12-21 RCSB XMY "Initial release" 2022-10-26 RCSB #