data_XNA # _chem_comp.id XNA _chem_comp.name "N~8~-(cyclopropylmethyl)-N~4~-(2-methylphenyl)-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 N8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-01-12 _chem_comp.pdbx_modified_date 2012-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.485 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XNA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3QA2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XNA C01 C01 C 0 1 N N N -3.116 -1.207 15.150 -4.215 3.505 0.950 C01 XNA 1 XNA C02 C02 C 0 1 Y N N -3.559 0.101 15.815 -4.456 2.138 0.365 C02 XNA 2 XNA C03 C03 C 0 1 Y N N -3.699 1.320 15.064 -5.732 1.612 0.336 C03 XNA 3 XNA C04 C04 C 0 1 Y N N -4.137 2.528 15.713 -5.953 0.357 -0.201 C04 XNA 4 XNA C05 C05 C 0 1 Y N N -4.445 2.552 17.124 -4.898 -0.376 -0.710 C05 XNA 5 XNA C06 C06 C 0 1 Y N N -4.299 1.339 17.891 -3.618 0.143 -0.685 C06 XNA 6 XNA C07 C07 C 0 1 Y N N -3.858 0.134 17.235 -3.393 1.406 -0.152 C07 XNA 7 XNA N08 N08 N 0 1 N N N -3.689 -1.089 17.994 -2.101 1.938 -0.131 N08 XNA 8 XNA C09 C09 C 0 1 Y N N -4.716 -1.448 18.963 -1.010 1.096 -0.042 C09 XNA 9 XNA N10 N10 N 0 1 Y N N -5.690 -0.561 19.416 -1.169 -0.206 0.143 N10 XNA 10 XNA C11 C11 C 0 1 Y N N -6.599 -1.030 20.362 -0.126 -1.027 0.230 C11 XNA 11 XNA N12 N12 N 0 1 Y N N -6.578 -2.332 20.881 1.122 -0.606 0.140 N12 XNA 12 XNA C13 C13 C 0 1 Y N N -5.592 -3.193 20.409 1.384 0.691 -0.046 C13 XNA 13 XNA C14 C14 C 0 1 Y N N -5.473 -4.580 20.873 2.702 1.200 -0.150 C14 XNA 14 XNA N15 N15 N 0 1 Y N N -4.504 -5.402 20.409 2.855 2.503 -0.335 N15 XNA 15 XNA C16 C16 C 0 1 Y N N -3.609 -4.913 19.459 1.815 3.317 -0.421 C16 XNA 16 XNA N17 N17 N 0 1 Y N N -3.624 -3.639 18.946 0.574 2.898 -0.332 N17 XNA 17 XNA C18 C18 C 0 1 Y N N -4.610 -2.824 19.434 0.310 1.602 -0.151 C18 XNA 18 XNA N19 N19 N 0 1 N N N -6.428 -5.056 21.883 3.796 0.361 -0.061 N19 XNA 19 XNA C20 C20 C 0 1 N N N -6.297 -6.434 22.359 5.150 0.909 -0.171 C20 XNA 20 XNA C21 C21 C 0 1 N N N -7.426 -7.243 21.697 6.170 -0.223 -0.039 C21 XNA 21 XNA C22 C22 C 0 1 N N N -8.334 -7.953 22.703 7.121 -0.181 1.159 C22 XNA 22 XNA C23 C23 C 0 1 N N N -7.336 -8.762 21.859 7.645 0.129 -0.244 C23 XNA 23 XNA N24 N24 N 0 1 N N N -7.668 -0.133 20.915 -0.359 -2.378 0.423 N24 XNA 24 XNA C25 C25 C 0 1 N N N -7.712 1.270 20.642 0.276 -3.178 -0.634 C25 XNA 25 XNA C26 C26 C 0 1 N N N -9.170 1.604 20.256 0.063 -4.665 -0.342 C26 XNA 26 XNA N27 N27 N 0 1 N N N -10.108 1.227 21.405 -1.377 -4.946 -0.266 N27 XNA 27 XNA C28 C28 C 0 1 N N N -9.936 -0.261 21.731 -2.012 -4.146 0.791 C28 XNA 28 XNA C29 C29 C 0 1 N N N -8.452 -0.557 22.039 -1.799 -2.658 0.499 C29 XNA 29 XNA H01 H01 H 0 1 N N N -2.020 -1.287 15.191 -4.316 4.258 0.168 H01 XNA 30 XNA H01A H01A H 0 0 N N N -3.565 -2.059 15.681 -4.946 3.698 1.736 H01A XNA 31 XNA H01B H01B H 0 0 N N N -3.445 -1.214 14.100 -3.211 3.550 1.370 H01B XNA 32 XNA H03 H03 H 0 1 N N N -3.474 1.329 14.008 -6.559 2.182 0.734 H03 XNA 33 XNA H04 H04 H 0 1 N N N -4.237 3.434 15.134 -6.953 -0.052 -0.221 H04 XNA 34 XNA H05 H05 H 0 1 N N N -4.779 3.463 17.597 -5.074 -1.356 -1.129 H05 XNA 35 XNA H06 H06 H 0 1 N N N -4.518 1.334 18.948 -2.794 -0.430 -1.083 H06 XNA 36 XNA HN08 HN08 H 0 0 N N N -2.888 -1.672 17.856 -1.970 2.898 -0.178 HN08 XNA 37 XNA H16 H16 H 0 1 N N N -2.846 -5.587 19.099 1.995 4.371 -0.572 H16 XNA 38 XNA HN19 HN19 H 0 0 N N N -6.320 -4.464 22.682 3.667 -0.591 0.075 HN19 XNA 39 XNA H20 H20 H 0 1 N N N -5.316 -6.845 22.078 5.268 1.394 -1.140 H20 XNA 40 XNA H20A H20A H 0 0 N N N -6.391 -6.471 23.454 5.312 1.639 0.622 H20A XNA 41 XNA H21 H21 H 0 1 N N N -7.569 -6.572 20.837 5.834 -1.201 -0.381 H21 XNA 42 XNA H22 H22 H 0 1 N N N -8.431 -7.839 23.793 7.019 0.653 1.854 H22 XNA 43 XNA H22A H22A H 0 0 N N N -9.430 -8.007 22.772 7.409 -1.132 1.606 H22A XNA 44 XNA H23 H23 H 0 1 N N N -7.496 -9.575 21.136 8.279 -0.619 -0.721 H23 XNA 45 XNA H23A H23A H 0 0 N N N -6.496 -9.407 22.156 7.888 1.166 -0.473 H23A XNA 46 XNA H25 H25 H 0 1 N N N -7.410 1.843 21.531 -0.171 -2.929 -1.597 H25 XNA 47 XNA H25A H25A H 0 0 N N N -7.030 1.521 19.816 1.344 -2.961 -0.662 H25A XNA 48 XNA H26 H26 H 0 1 N N N -9.256 2.682 20.053 0.508 -5.260 -1.139 H26 XNA 49 XNA H26A H26A H 0 0 N N N -9.449 1.036 19.356 0.534 -4.920 0.608 H26A XNA 50 XNA HN27 HN27 H 0 0 N N N -9.885 1.774 22.212 -1.824 -4.787 -1.156 HN27 XNA 51 XNA H28 H28 H 0 1 N N N -10.549 -0.516 22.608 -3.080 -4.362 0.819 H28 XNA 52 XNA H28A H28A H 0 0 N N N -10.258 -0.864 20.869 -1.565 -4.394 1.754 H28A XNA 53 XNA H29 H29 H 0 1 N N N -8.312 -1.635 22.208 -2.244 -2.064 1.296 H29 XNA 54 XNA H29A H29A H 0 0 N N N -8.140 -0.009 22.941 -2.270 -2.404 -0.451 H29A XNA 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XNA C01 C02 SING N N 1 XNA C01 H01 SING N N 2 XNA C01 H01A SING N N 3 XNA C01 H01B SING N N 4 XNA C03 C02 DOUB Y N 5 XNA C02 C07 SING Y N 6 XNA C03 C04 SING Y N 7 XNA C03 H03 SING N N 8 XNA C04 C05 DOUB Y N 9 XNA C04 H04 SING N N 10 XNA C05 C06 SING Y N 11 XNA C05 H05 SING N N 12 XNA C07 C06 DOUB Y N 13 XNA C06 H06 SING N N 14 XNA C07 N08 SING N N 15 XNA N08 C09 SING N N 16 XNA N08 HN08 SING N N 17 XNA C09 N10 DOUB Y N 18 XNA C09 C18 SING Y N 19 XNA N10 C11 SING Y N 20 XNA C11 N12 DOUB Y N 21 XNA C11 N24 SING N N 22 XNA C13 N12 SING Y N 23 XNA C18 C13 DOUB Y N 24 XNA C13 C14 SING Y N 25 XNA N15 C14 DOUB Y N 26 XNA C14 N19 SING N N 27 XNA C16 N15 SING Y N 28 XNA N17 C16 DOUB Y N 29 XNA C16 H16 SING N N 30 XNA N17 C18 SING Y N 31 XNA N19 C20 SING N N 32 XNA N19 HN19 SING N N 33 XNA C21 C20 SING N N 34 XNA C20 H20 SING N N 35 XNA C20 H20A SING N N 36 XNA C21 C23 SING N N 37 XNA C21 C22 SING N N 38 XNA C21 H21 SING N N 39 XNA C23 C22 SING N N 40 XNA C22 H22 SING N N 41 XNA C22 H22A SING N N 42 XNA C23 H23 SING N N 43 XNA C23 H23A SING N N 44 XNA C25 N24 SING N N 45 XNA N24 C29 SING N N 46 XNA C26 C25 SING N N 47 XNA C25 H25 SING N N 48 XNA C25 H25A SING N N 49 XNA C26 N27 SING N N 50 XNA C26 H26 SING N N 51 XNA C26 H26A SING N N 52 XNA N27 C28 SING N N 53 XNA N27 HN27 SING N N 54 XNA C28 C29 SING N N 55 XNA C28 H28 SING N N 56 XNA C28 H28A SING N N 57 XNA C29 H29 SING N N 58 XNA C29 H29A SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XNA SMILES ACDLabs 12.01 "n3c(Nc1ccccc1C)c5ncnc(NCC2CC2)c5nc3N4CCNCC4" XNA SMILES_CANONICAL CACTVS 3.370 "Cc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5" XNA SMILES CACTVS 3.370 "Cc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5" XNA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5" XNA SMILES "OpenEye OEToolkits" 1.7.0 "Cc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5" XNA InChI InChI 1.03 "InChI=1S/C21H26N8/c1-14-4-2-3-5-16(14)26-20-17-18(19(25-13-24-17)23-12-15-6-7-15)27-21(28-20)29-10-8-22-9-11-29/h2-5,13,15,22H,6-12H2,1H3,(H,23,24,25)(H,26,27,28)" XNA InChIKey InChI 1.03 YOLJYZUKAHEMMW-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XNA "SYSTEMATIC NAME" ACDLabs 12.01 "N~8~-(cyclopropylmethyl)-N~4~-(2-methylphenyl)-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" XNA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N4-(cyclopropylmethyl)-N8-(2-methylphenyl)-6-piperazin-1-yl-pyrimido[5,4-d]pyrimidine-4,8-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XNA "Create component" 2011-01-12 RCSB XNA "Modify aromatic_flag" 2011-06-04 RCSB XNA "Modify descriptor" 2011-06-04 RCSB #