data_XNB # _chem_comp.id XNB _chem_comp.name "N~8~-(cyclopropylmethyl)-N~4~-[2-(methylsulfanyl)phenyl]-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 N8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-01-12 _chem_comp.pdbx_modified_date 2012-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 422.550 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XNB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3Q92 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XNB C01 C01 C 0 1 N N N -25.661 23.953 59.489 6.281 -3.034 -0.700 C01 XNB 1 XNB S02 S02 S 0 1 N N N -24.353 24.565 58.378 4.506 -2.778 -0.423 S02 XNB 2 XNB C03 C03 C 0 1 Y N N -23.629 23.187 57.512 4.411 -1.066 -0.019 C03 XNB 3 XNB C04 C04 C 0 1 Y N N -22.740 22.278 58.110 5.563 -0.294 0.016 C04 XNB 4 XNB C05 C05 C 0 1 Y N N -22.202 21.229 57.350 5.485 1.049 0.334 C05 XNB 5 XNB C06 C06 C 0 1 Y N N -22.580 21.118 56.009 4.262 1.628 0.616 C06 XNB 6 XNB C07 C07 C 0 1 Y N N -23.479 22.027 55.409 3.108 0.866 0.583 C07 XNB 7 XNB C08 C08 C 0 1 Y N N -24.039 23.094 56.149 3.175 -0.481 0.260 C08 XNB 8 XNB N09 N09 N 0 1 N N N -24.960 24.114 55.639 2.008 -1.253 0.226 N09 XNB 9 XNB C10 C10 C 0 1 Y N N -25.957 23.940 54.638 0.777 -0.640 0.107 C10 XNB 10 XNB N11 N11 N 0 1 Y N N -25.956 22.783 53.887 0.678 0.666 -0.103 N11 XNB 11 XNB C12 C12 C 0 1 Y N N -26.970 22.606 52.891 -0.506 1.259 -0.218 C12 XNB 12 XNB N13 N13 N 0 1 Y N N -27.958 23.561 52.643 -1.653 0.614 -0.133 N13 XNB 13 XNB C14 C14 C 0 1 Y N N -27.962 24.736 53.393 -1.683 -0.705 0.076 C14 XNB 14 XNB C15 C15 C 0 1 Y N N -28.993 25.898 53.254 -2.887 -1.442 0.173 C15 XNB 15 XNB N16 N16 N 0 1 Y N N -28.844 26.966 54.079 -2.804 -2.749 0.382 N16 XNB 16 XNB C17 C17 C 0 1 Y N N -27.798 27.004 55.014 -1.635 -3.359 0.499 C17 XNB 17 XNB N18 N18 N 0 1 Y N N -26.868 26.080 55.214 -0.488 -2.723 0.417 N18 XNB 18 XNB C19 C19 C 0 1 Y N N -26.974 24.949 54.395 -0.463 -1.406 0.202 C19 XNB 19 XNB N20 N20 N 0 1 N N N -30.036 25.868 52.298 -4.113 -0.819 0.054 N20 XNB 20 XNB C21 C21 C 0 1 N N N -30.336 24.606 51.598 -5.347 -1.603 0.157 C21 XNB 21 XNB C22 C22 C 0 1 N N N -30.964 24.285 50.252 -6.554 -0.678 -0.010 C22 XNB 22 XNB C23 C23 C 0 1 N N N -31.505 22.865 50.014 -7.944 -1.289 0.182 C23 XNB 23 XNB C24 C24 C 0 1 N N N -30.294 23.328 49.250 -7.460 -0.910 -1.220 C24 XNB 24 XNB N25 N25 N 0 1 N N N -26.917 21.360 52.146 -0.537 2.626 -0.436 N25 XNB 25 XNB C26 C26 C 0 1 N N N -27.794 21.142 50.966 -1.330 3.307 0.597 C26 XNB 26 XNB C27 C27 C 0 1 N N N -27.894 19.724 50.330 -1.406 4.801 0.276 C27 XNB 27 XNB N28 N28 N 0 1 N N N -26.736 18.833 50.501 -0.046 5.355 0.210 N28 XNB 28 XNB C29 C29 C 0 1 N N N -26.142 18.881 51.847 0.748 4.674 -0.822 C29 XNB 29 XNB C30 C30 C 0 1 N N N -25.855 20.323 52.365 0.823 3.180 -0.501 C30 XNB 30 XNB H01 H01 H 0 1 N N N -26.112 24.800 60.027 6.461 -4.077 -0.961 H01 XNB 31 XNB H01A H01A H 0 0 N N N -26.434 23.441 58.898 6.618 -2.392 -1.513 H01A XNB 32 XNB H01B H01B H 0 0 N N N -25.227 23.248 60.213 6.829 -2.787 0.209 H01B XNB 33 XNB H04 H04 H 0 1 N N N -22.472 22.387 59.151 6.521 -0.743 -0.204 H04 XNB 34 XNB H05 H05 H 0 1 N N N -21.512 20.524 57.790 6.383 1.648 0.361 H05 XNB 35 XNB H06 H06 H 0 1 N N N -22.173 20.314 55.414 4.207 2.677 0.864 H06 XNB 36 XNB H07 H07 H 0 1 N N N -23.743 21.905 54.369 2.154 1.322 0.805 H07 XNB 37 XNB HN09 HN09 H 0 0 N N N -24.879 25.028 56.036 2.064 -2.220 0.285 HN09 XNB 38 XNB H17 H17 H 0 1 N N N -27.745 27.883 55.640 -1.623 -4.425 0.669 H17 XNB 39 XNB HN20 HN20 H 0 0 N N N -30.871 26.125 52.785 -4.158 0.138 -0.099 HN20 XNB 40 XNB H21 H21 H 0 1 N N N -29.339 24.150 51.504 -5.361 -2.363 -0.624 H21 XNB 41 XNB H21A H21A H 0 0 N N N -31.023 24.109 52.299 -5.390 -2.084 1.134 H21A XNB 42 XNB H22 H22 H 0 1 N N N -31.347 25.314 50.190 -6.407 0.351 0.319 H22 XNB 43 XNB H23 H23 H 0 1 N N N -31.631 22.023 50.710 -7.998 -2.350 0.426 H23 XNB 44 XNB H23A H23A H 0 0 N N N -32.488 22.526 49.656 -8.711 -0.662 0.636 H23A XNB 45 XNB H24 H24 H 0 1 N N N -30.128 23.429 48.167 -7.910 -0.034 -1.688 H24 XNB 46 XNB H24A H24A H 0 0 N N N -29.271 22.926 49.221 -7.196 -1.722 -1.898 H24A XNB 47 XNB H26 H26 H 0 1 N N N -28.812 21.406 51.288 -2.336 2.888 0.617 H26 XNB 48 XNB H26A H26A H 0 0 N N N -27.415 21.807 50.176 -0.858 3.167 1.569 H26A XNB 49 XNB H27 H27 H 0 1 N N N -28.757 19.223 50.793 -1.902 4.942 -0.684 H27 XNB 50 XNB H27A H27A H 0 0 N N N -28.035 19.865 49.248 -1.969 5.313 1.056 H27A XNB 51 XNB HN28 HN28 H 0 0 N N N -27.039 17.895 50.329 -0.068 6.351 0.051 HN28 XNB 52 XNB H29 H29 H 0 1 N N N -26.845 18.404 52.545 0.275 4.814 -1.795 H29 XNB 53 XNB H29A H29A H 0 0 N N N -25.187 18.335 51.816 1.754 5.093 -0.843 H29A XNB 54 XNB H30 H30 H 0 1 N N N -24.952 20.676 51.846 1.320 3.038 0.458 H30 XNB 55 XNB H30A H30A H 0 0 N N N -25.701 20.248 53.452 1.387 2.668 -1.282 H30A XNB 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XNB S02 C01 SING N N 1 XNB C01 H01 SING N N 2 XNB C01 H01A SING N N 3 XNB C01 H01B SING N N 4 XNB C03 S02 SING N N 5 XNB C08 C03 DOUB Y N 6 XNB C03 C04 SING Y N 7 XNB C05 C04 DOUB Y N 8 XNB C04 H04 SING N N 9 XNB C06 C05 SING Y N 10 XNB C05 H05 SING N N 11 XNB C07 C06 DOUB Y N 12 XNB C06 H06 SING N N 13 XNB C07 C08 SING Y N 14 XNB C07 H07 SING N N 15 XNB N09 C08 SING N N 16 XNB C10 N09 SING N N 17 XNB N09 HN09 SING N N 18 XNB N11 C10 DOUB Y N 19 XNB C19 C10 SING Y N 20 XNB C12 N11 SING Y N 21 XNB N25 C12 SING N N 22 XNB N13 C12 DOUB Y N 23 XNB N13 C14 SING Y N 24 XNB C15 C14 DOUB Y N 25 XNB C14 C19 SING Y N 26 XNB N20 C15 SING N N 27 XNB C15 N16 SING Y N 28 XNB N16 C17 DOUB Y N 29 XNB C17 N18 SING Y N 30 XNB C17 H17 SING N N 31 XNB C19 N18 DOUB Y N 32 XNB C21 N20 SING N N 33 XNB N20 HN20 SING N N 34 XNB C22 C21 SING N N 35 XNB C21 H21 SING N N 36 XNB C21 H21A SING N N 37 XNB C24 C22 SING N N 38 XNB C23 C22 SING N N 39 XNB C22 H22 SING N N 40 XNB C24 C23 SING N N 41 XNB C23 H23 SING N N 42 XNB C23 H23A SING N N 43 XNB C24 H24 SING N N 44 XNB C24 H24A SING N N 45 XNB C26 N25 SING N N 46 XNB N25 C30 SING N N 47 XNB C27 C26 SING N N 48 XNB C26 H26 SING N N 49 XNB C26 H26A SING N N 50 XNB C27 N28 SING N N 51 XNB C27 H27 SING N N 52 XNB C27 H27A SING N N 53 XNB N28 C29 SING N N 54 XNB N28 HN28 SING N N 55 XNB C29 C30 SING N N 56 XNB C29 H29 SING N N 57 XNB C29 H29A SING N N 58 XNB C30 H30 SING N N 59 XNB C30 H30A SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XNB SMILES ACDLabs 12.01 "n3c(Nc1ccccc1SC)c5ncnc(NCC2CC2)c5nc3N4CCNCC4" XNB SMILES_CANONICAL CACTVS 3.370 "CSc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5" XNB SMILES CACTVS 3.370 "CSc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5" XNB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CSc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5" XNB SMILES "OpenEye OEToolkits" 1.7.0 "CSc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5" XNB InChI InChI 1.03 "InChI=1S/C21H26N8S/c1-30-16-5-3-2-4-15(16)26-20-17-18(19(25-13-24-17)23-12-14-6-7-14)27-21(28-20)29-10-8-22-9-11-29/h2-5,13-14,22H,6-12H2,1H3,(H,23,24,25)(H,26,27,28)" XNB InChIKey InChI 1.03 HFLMLZKGLUEWBU-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XNB "SYSTEMATIC NAME" ACDLabs 12.01 "N~8~-(cyclopropylmethyl)-N~4~-[2-(methylsulfanyl)phenyl]-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" XNB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N4-(cyclopropylmethyl)-N8-(2-methylsulfanylphenyl)-6-piperazin-1-yl-pyrimido[5,4-d]pyrimidine-4,8-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XNB "Create component" 2011-01-12 RCSB XNB "Modify aromatic_flag" 2011-06-04 RCSB XNB "Modify descriptor" 2011-06-04 RCSB #