data_XNE # _chem_comp.id XNE _chem_comp.name "7-[(1~{S})-1-[4-(aminomethyl)phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H30 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-06-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XNE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PAC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XNE O19 O1 O 0 1 N N N N N N -22.405 -8.387 10.511 0.922 -4.879 0.536 O19 XNE 1 XNE C15 C1 C 0 1 Y N N N N N -22.416 -12.215 12.142 -0.633 -1.014 -0.474 C15 XNE 2 XNE C13 C2 C 0 1 Y N N N N N -26.686 -13.843 15.807 -7.622 -0.316 0.837 C13 XNE 3 XNE C12 C3 C 0 1 Y N N N N N -27.808 -14.532 16.249 -8.699 0.509 1.086 C12 XNE 4 XNE C17 C4 C 0 1 Y N N N N N -22.284 -10.736 10.476 0.989 -2.485 0.080 C17 XNE 5 XNE C10 C5 C 0 1 N N N N N N -30.339 -14.986 16.290 -9.828 2.740 1.006 C10 XNE 6 XNE C01 C6 C 0 1 N N N N N N -22.348 -12.343 15.798 -3.273 -1.734 -2.240 C01 XNE 7 XNE C02 C7 C 0 1 N N S N N N -23.222 -12.116 14.603 -3.115 -1.093 -0.859 C02 XNE 8 XNE C04 C8 C 0 1 N N N N N N -25.554 -12.168 14.265 -5.318 -0.676 -0.040 C04 XNE 9 XNE C06 C9 C 0 1 Y N N N N N -26.827 -12.859 14.800 -6.475 0.202 0.230 C06 XNE 10 XNE C07 C10 C 0 1 Y N N N N N -28.074 -12.579 14.286 -6.428 1.553 -0.120 C07 XNE 11 XNE C08 C11 C 0 1 Y N N N N N -29.206 -13.230 14.830 -7.512 2.366 0.135 C08 XNE 12 XNE C09 C12 C 0 1 Y N N N N N -29.081 -14.254 15.782 -8.647 1.845 0.731 C09 XNE 13 XNE C14 C13 C 0 1 Y N N N N N -22.699 -12.884 13.358 -1.810 -0.343 -0.799 C14 XNE 14 XNE C18 C14 C 0 1 N N N N N N -22.503 -9.447 9.833 1.646 -3.745 0.434 C18 XNE 15 XNE C21 C15 C 0 1 Y N N N N N -21.858 -11.970 9.929 1.619 -1.261 -0.061 C21 XNE 16 XNE C22 C16 C 0 1 Y N N N N N -21.331 -12.191 8.573 3.061 -0.982 0.119 C22 XNE 17 XNE C23 C17 C 0 1 Y N N N N N -20.366 -11.321 8.005 4.009 -1.550 -0.741 C23 XNE 18 XNE C24 C18 C 0 1 Y N N N N N -19.908 -11.613 6.735 5.344 -1.256 -0.530 C24 XNE 19 XNE C25 C19 C 0 1 Y N N N N N -20.435 -12.695 6.044 5.698 -0.420 0.514 C25 XNE 20 XNE C26 C20 C 0 1 N N N N N N -19.968 -13.016 4.640 7.152 -0.103 0.750 C26 XNE 21 XNE C28 C21 C 0 1 N N N N N N -19.522 -15.336 4.647 6.787 2.292 0.713 C28 XNE 22 XNE C29 C22 C 0 1 N N N N N N -18.600 -16.519 4.482 7.121 3.579 -0.045 C29 XNE 23 XNE C31 C23 C 0 1 N N N N N N -17.690 -15.234 2.655 9.257 2.686 -0.661 C31 XNE 24 XNE C32 C24 C 0 1 N N N N N N -18.284 -13.976 3.251 8.944 1.387 0.091 C32 XNE 25 XNE C34 C25 C 0 1 Y N N N N N -21.777 -13.255 7.848 3.499 -0.144 1.145 C34 XNE 26 XNE C35 C26 C 0 1 Y N N N N N -21.936 -12.887 10.981 0.576 -0.295 -0.423 C35 XNE 27 XNE C36 C27 C 0 1 Y N N N N N -21.678 -14.273 11.085 0.585 1.075 -0.697 C36 XNE 28 XNE C37 C28 C 0 1 Y N N N N N -21.964 -14.933 12.283 -0.581 1.712 -1.013 C37 XNE 29 XNE C38 C29 C 0 1 Y N N N N N -22.498 -14.254 13.391 -1.777 1.008 -1.065 C38 XNE 30 XNE N11 N1 N 0 1 N N N N N N -30.562 -14.565 17.634 -10.730 2.731 -0.153 N11 XNE 31 XNE N16 N2 N 0 1 Y N N N N N -22.604 -10.897 11.789 -0.359 -2.327 -0.173 N16 XNE 32 XNE N27 N3 N 0 1 N N N N N N -18.939 -14.048 4.508 7.491 1.163 0.086 N27 XNE 33 XNE N33 N4 N 0 1 Y N N N N N -21.373 -13.523 6.589 4.782 0.101 1.309 N33 XNE 34 XNE O03 O2 O 0 1 N N N N N N -24.489 -12.629 14.967 -4.214 -0.173 -0.624 O03 XNE 35 XNE O05 O3 O 0 1 N N N N N N -25.459 -11.392 13.355 -5.362 -1.851 0.266 O05 XNE 36 XNE O20 O4 O 0 1 N N N N N N -22.915 -9.442 8.638 2.846 -3.770 0.635 O20 XNE 37 XNE O30 O5 O 0 1 N N N N N N -17.642 -16.387 3.454 8.539 3.766 -0.056 O30 XNE 38 XNE H1 H1 H 0 1 N N N N N N -22.681 -7.647 9.984 1.442 -5.658 0.774 H1 XNE 39 XNE H131 H2 H 0 0 N N N N N N -25.715 -14.056 16.228 -7.663 -1.359 1.114 H131 XNE 40 XNE H121 H3 H 0 0 N N N N N N -27.683 -15.313 16.984 -9.585 0.111 1.558 H121 XNE 41 XNE H101 H4 H 0 0 N N N N N N -31.205 -14.724 15.665 -10.362 2.378 1.885 H101 XNE 42 XNE H102 H5 H 0 0 N N N N N N -30.180 -16.074 16.258 -9.479 3.757 1.187 H102 XNE 43 XNE H013 H6 H 0 0 N N N N N N -22.749 -11.785 16.657 -3.265 -0.956 -3.004 H013 XNE 44 XNE H012 H7 H 0 0 N N N N N N -22.325 -13.417 16.037 -2.448 -2.424 -2.417 H012 XNE 45 XNE H011 H8 H 0 0 N N N N N N -21.328 -11.994 15.578 -4.217 -2.276 -2.283 H011 XNE 46 XNE H021 H9 H 0 0 N N N N N N -23.276 -11.042 14.373 -3.123 -1.871 -0.095 H021 XNE 47 XNE H071 H10 H 0 0 N N N N N N -28.186 -11.871 13.478 -5.544 1.959 -0.588 H071 XNE 48 XNE H081 H11 H 0 0 N N N N N N -30.192 -12.932 14.505 -7.477 3.411 -0.135 H081 XNE 49 XNE H231 H12 H 0 0 N N N N N N -20.002 -10.460 8.546 3.705 -2.200 -1.548 H231 XNE 50 XNE H241 H13 H 0 0 N N N N N N -19.142 -11.001 6.281 6.103 -1.676 -1.174 H241 XNE 51 XNE H262 H14 H 0 0 N N N N N N -19.569 -12.089 4.202 7.334 -0.012 1.821 H262 XNE 52 XNE H261 H15 H 0 0 N N N N N N -20.846 -13.345 4.064 7.769 -0.904 0.343 H261 XNE 53 XNE H282 H16 H 0 0 N N N N N N -20.317 -15.425 3.892 7.105 2.387 1.751 H282 XNE 54 XNE H281 H17 H 0 0 N N N N N N -19.963 -15.395 5.653 5.712 2.116 0.676 H281 XNE 55 XNE H292 H18 H 0 0 N N N N N N -19.216 -17.404 4.264 6.756 3.504 -1.069 H292 XNE 56 XNE H291 H19 H 0 0 N N N N N N -18.064 -16.670 5.431 6.646 4.426 0.450 H291 XNE 57 XNE H311 H20 H 0 0 N N N N N N -18.280 -15.481 1.760 10.327 2.886 -0.611 H311 XNE 58 XNE H312 H21 H 0 0 N N N N N N -16.657 -14.999 2.359 8.953 2.586 -1.702 H312 XNE 59 XNE H321 H22 H 0 0 N N N N N N -17.463 -13.252 3.358 9.444 0.553 -0.400 H321 XNE 60 XNE H322 H23 H 0 0 N N N N N N -19.019 -13.593 2.527 9.296 1.468 1.120 H322 XNE 61 XNE H341 H24 H 0 0 N N N N N N -22.493 -13.921 8.307 2.779 0.305 1.814 H341 XNE 62 XNE H361 H25 H 0 0 N N N N N N -21.264 -14.816 10.248 1.511 1.629 -0.658 H361 XNE 63 XNE H371 H26 H 0 0 N N N N N N -21.769 -15.993 12.359 -0.573 2.771 -1.225 H371 XNE 64 XNE H381 H27 H 0 0 N N N N N N -22.755 -14.808 14.281 -2.691 1.525 -1.317 H381 XNE 65 XNE H111 H28 H 0 0 N N N N N N -31.374 -15.022 17.997 -11.017 1.791 -0.381 H111 XNE 66 XNE H112 H30 H 0 0 N N N N N N -29.768 -14.802 18.194 -11.530 3.325 0.007 H112 XNE 67 XNE H161 H31 H 0 0 N N N N N N -22.925 -10.173 12.400 -1.017 -3.039 -0.138 H161 XNE 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XNE C31 C32 SING N N 1 XNE C31 O30 SING N N 2 XNE C32 N27 SING N N 3 XNE O30 C29 SING N N 4 XNE C29 C28 SING N N 5 XNE N27 C26 SING N N 6 XNE N27 C28 SING N N 7 XNE C26 C25 SING N N 8 XNE C25 N33 DOUB Y N 9 XNE C25 C24 SING Y N 10 XNE N33 C34 SING Y N 11 XNE C24 C23 DOUB Y N 12 XNE C34 C22 DOUB Y N 13 XNE C23 C22 SING Y N 14 XNE C22 C21 SING N N 15 XNE O20 C18 DOUB N N 16 XNE C18 C17 SING N N 17 XNE C18 O19 SING N N 18 XNE C21 C17 DOUB Y N 19 XNE C21 C35 SING Y N 20 XNE C17 N16 SING Y N 21 XNE C35 C36 DOUB Y N 22 XNE C35 C15 SING Y N 23 XNE C36 C37 SING Y N 24 XNE N16 C15 SING Y N 25 XNE C15 C14 DOUB Y N 26 XNE C37 C38 DOUB Y N 27 XNE O05 C04 DOUB N N 28 XNE C14 C38 SING Y N 29 XNE C14 C02 SING N N 30 XNE C04 C06 SING N N 31 XNE C04 O03 SING N N 32 XNE C07 C06 DOUB Y N 33 XNE C07 C08 SING Y N 34 XNE C02 O03 SING N N 35 XNE C02 C01 SING N N 36 XNE C06 C13 SING Y N 37 XNE C08 C09 DOUB Y N 38 XNE C09 C12 SING Y N 39 XNE C09 C10 SING N N 40 XNE C13 C12 DOUB Y N 41 XNE C10 N11 SING N N 42 XNE O19 H1 SING N N 43 XNE C13 H131 SING N N 44 XNE C12 H121 SING N N 45 XNE C10 H101 SING N N 46 XNE C10 H102 SING N N 47 XNE C01 H013 SING N N 48 XNE C01 H012 SING N N 49 XNE C01 H011 SING N N 50 XNE C02 H021 SING N N 51 XNE C07 H071 SING N N 52 XNE C08 H081 SING N N 53 XNE C23 H231 SING N N 54 XNE C24 H241 SING N N 55 XNE C26 H262 SING N N 56 XNE C26 H261 SING N N 57 XNE C28 H282 SING N N 58 XNE C28 H281 SING N N 59 XNE C29 H292 SING N N 60 XNE C29 H291 SING N N 61 XNE C31 H311 SING N N 62 XNE C31 H312 SING N N 63 XNE C32 H321 SING N N 64 XNE C32 H322 SING N N 65 XNE C34 H341 SING N N 66 XNE C36 H361 SING N N 67 XNE C37 H371 SING N N 68 XNE C38 H381 SING N N 69 XNE N11 H111 SING N N 70 XNE N11 H112 SING N N 71 XNE N16 H161 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XNE InChI InChI 1.06 "InChI=1S/C29H30N4O5/c1-18(38-29(36)20-7-5-19(15-30)6-8-20)23-3-2-4-24-25(27(28(34)35)32-26(23)24)21-9-10-22(31-16-21)17-33-11-13-37-14-12-33/h2-10,16,18,32H,11-15,17,30H2,1H3,(H,34,35)/t18-/m0/s1" XNE InChIKey InChI 1.06 GGOSPUPUTKUIJH-SFHVURJKSA-N XNE SMILES_CANONICAL CACTVS 3.385 "C[C@H](OC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(CN5CCOCC5)nc4" XNE SMILES CACTVS 3.385 "C[CH](OC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(CN5CCOCC5)nc4" XNE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN" XNE SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN" # _pdbx_chem_comp_identifier.comp_id XNE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[4-(aminomethyl)phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XNE "Create component" 2023-06-08 PDBE XNE "Initial release" 2024-06-26 RCSB #