data_XNF # _chem_comp.id XNF _chem_comp.name "4-[[(~{S})-dimethoxyphosphoryl-[4-[(~{S})-dimethoxyphosphoryl-[(4-sulfamoylphenyl)amino]methyl]phenyl]methyl]amino]benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H32 N4 O10 P2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-06 _chem_comp.pdbx_modified_date 2024-11-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 662.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XNF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R2F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag XNF O1 O1 O 0 1 N N N 1.145 10.955 11.511 1.864 3.251 -1.050 O1 XNF 1 N N N XNF P2 P1 P 0 1 N N N 1.100 11.533 12.887 2.626 2.885 0.164 P2 XNF 2 N N N XNF O3 O2 O 0 1 N N N 2.475 12.214 13.258 4.123 3.467 0.054 O3 XNF 3 N N N XNF C4 C1 C 0 1 N N N 3.720 11.690 12.700 4.405 4.844 -0.201 C4 XNF 4 N N N XNF O5 O3 O 0 1 N N N -0.048 12.562 13.155 1.902 3.507 1.460 O5 XNF 5 N N N XNF C6 C2 C 0 1 N N N -1.436 12.138 13.075 1.605 4.898 1.593 C6 XNF 6 N N N XNF C7 C3 C 0 1 N N S 0.780 10.414 14.290 2.690 1.069 0.316 C7 XNF 7 N N N XNF C8 C4 C 0 1 Y N N -0.075 9.187 14.041 1.288 0.516 0.318 C8 XNF 8 N N N XNF C9 C5 C 0 1 Y N N 0.319 8.204 13.153 0.646 0.263 1.515 C9 XNF 9 N N N XNF C10 C6 C 0 1 Y N N -0.500 7.110 12.897 -0.640 -0.245 1.517 C10 XNF 10 N N N XNF C11 C7 C 0 1 Y N N -1.730 6.968 13.504 -1.283 -0.500 0.320 C11 XNF 11 N N N XNF C12 C8 C 0 1 N N S -2.665 5.859 13.053 -2.684 -1.054 0.321 C12 XNF 12 N N N XNF P13 P2 P 0 1 N N N -3.341 6.225 11.393 -2.620 -2.870 0.173 P13 XNF 13 N N N XNF O14 O4 O 0 1 N N N -2.078 6.054 10.461 -1.894 -3.489 1.470 O14 XNF 14 N N N XNF C15 C9 C 0 1 N N N -1.436 7.169 9.720 -1.597 -4.880 1.606 C15 XNF 15 N N N XNF O16 O5 O 0 1 N N N -3.841 7.735 11.381 -4.117 -3.453 0.066 O16 XNF 16 N N N XNF C17 C10 C 0 1 N N N -4.747 8.355 10.380 -4.399 -4.829 -0.200 C17 XNF 17 N N N XNF O18 O6 O 0 1 N N N -4.478 5.392 11.083 -1.859 -3.239 -1.041 O18 XNF 18 N N N XNF N19 N1 N 0 1 N N N -3.788 5.661 13.925 -3.431 -0.498 -0.810 N19 XNF 19 N N N XNF C20 C11 C 0 1 Y N N -4.153 4.401 14.440 -4.745 -0.060 -0.632 C20 XNF 20 N N N XNF C21 C12 C 0 1 Y N N -3.329 3.375 14.854 -5.479 0.399 -1.719 C21 XNF 21 N N N XNF C22 C13 C 0 1 Y N N -3.850 2.296 15.556 -6.778 0.831 -1.540 C22 XNF 22 N N N XNF C23 C14 C 0 1 Y N N -5.197 2.259 15.828 -7.349 0.806 -0.280 C23 XNF 23 N N N XNF S24 S1 S 0 1 N N N -5.892 0.916 16.734 -9.008 1.358 -0.056 S24 XNF 24 N N N XNF O25 O7 O 0 1 N N N -7.351 1.049 16.592 -9.287 2.239 -1.135 O25 XNF 25 N N N XNF N26 N2 N 0 1 N N N -5.425 -0.504 16.091 -9.993 0.043 -0.261 N26 XNF 26 N N N XNF O27 O8 O 0 1 N N N -5.393 1.032 18.071 -9.123 1.738 1.308 O27 XNF 27 N N N XNF C28 C15 C 0 1 Y N N -6.024 3.283 15.401 -6.622 0.350 0.803 C28 XNF 28 N N N XNF C29 C16 C 0 1 Y N N -5.487 4.338 14.710 -5.324 -0.088 0.630 C29 XNF 29 N N N XNF C30 C17 C 0 1 Y N N -2.109 7.946 14.402 -0.641 -0.246 -0.878 C30 XNF 30 N N N XNF C31 C18 C 0 1 Y N N -1.297 9.043 14.664 0.643 0.265 -0.879 C31 XNF 31 N N N XNF N32 N3 N 0 1 N N N 2.039 10.135 14.944 3.435 0.510 -0.815 N32 XNF 32 N N N XNF C33 C19 C 0 1 Y N N 2.382 10.807 16.102 4.746 0.063 -0.635 C33 XNF 33 N N N XNF C34 C20 C 0 1 Y N N 1.659 11.902 16.570 5.474 -0.412 -1.718 C34 XNF 34 N N N XNF C35 C21 C 0 1 Y N N 2.013 12.515 17.755 6.770 -0.853 -1.537 C35 XNF 35 N N N XNF C36 C22 C 0 1 Y N N 3.094 12.027 18.472 7.343 -0.821 -0.279 C36 XNF 36 N N N XNF S37 S2 S 0 1 N N N 3.579 12.838 19.965 8.998 -1.384 -0.053 S37 XNF 37 N N N XNF O38 O9 O 0 1 N N N 4.500 11.959 20.700 9.267 -2.278 -1.124 O38 XNF 38 N N N XNF N39 N4 N 0 1 N N N 4.422 14.142 19.497 9.993 -0.079 -0.271 N39 XNF 39 N N N XNF O40 O10 O 0 1 N N N 2.358 13.283 20.601 9.112 -1.753 1.315 O40 XNF 40 N N N XNF C41 C23 C 0 1 Y N N 3.820 10.941 18.018 6.621 -0.349 0.801 C41 XNF 41 N N N XNF C42 C24 C 0 1 Y N N 3.460 10.337 16.831 5.326 0.098 0.626 C42 XNF 42 N N N XNF H4C H1 H 0 1 N N N 4.567 12.287 13.068 4.078 5.446 0.647 H4C XNF 43 N N N XNF H4A H2 H 0 1 N N N 3.848 10.642 13.010 5.478 4.974 -0.347 H4A XNF 44 N N N XNF H4B H3 H 0 1 N N N 3.682 11.746 11.602 3.875 5.163 -1.099 H4B XNF 45 N N N XNF H6C H4 H 0 1 N N N -2.094 12.992 13.293 1.117 5.076 2.552 H6C XNF 46 N N N XNF H6B H5 H 0 1 N N N -1.647 11.762 12.063 2.529 5.473 1.544 H6B XNF 47 N N N XNF H6A H6 H 0 1 N N N -1.618 11.339 13.809 0.942 5.207 0.785 H6A XNF 48 N N N XNF H7 H7 H 0 1 N N N 0.202 11.044 14.982 3.188 0.800 1.248 H7 XNF 49 N N N XNF H9 H8 H 0 1 N N N 1.273 8.286 12.653 1.149 0.463 2.450 H9 XNF 50 N N N XNF H10 H9 H 0 1 N N N -0.164 6.352 12.205 -1.141 -0.442 2.452 H10 XNF 51 N N N XNF H12 H10 H 0 1 N N N -2.094 4.925 12.946 -3.182 -0.783 1.253 H12 XNF 52 N N N XNF H15A H11 H 0 0 N N N -0.579 6.784 9.148 -1.108 -5.055 2.564 H15A XNF 53 N N N XNF H15C H12 H 0 0 N N N -2.165 7.619 9.030 -2.521 -5.456 1.559 H15C XNF 54 N N N XNF H15B H13 H 0 0 N N N -1.088 7.931 10.433 -0.934 -5.190 0.798 H15B XNF 55 N N N XNF H17C H14 H 0 0 N N N -4.910 9.412 10.637 -3.872 -5.140 -1.102 H17C XNF 56 N N N XNF H17B H15 H 0 0 N N N -4.291 8.287 9.381 -4.069 -5.437 0.642 H17B XNF 57 N N N XNF H17A H16 H 0 0 N N N -5.711 7.825 10.380 -5.472 -4.958 -0.343 H17A XNF 58 N N N XNF H19 H17 H 0 1 N N N -3.625 6.246 14.720 -3.012 -0.434 -1.683 H19 XNF 59 N N N XNF H21 H18 H 0 1 N N N -2.273 3.411 14.631 -5.033 0.419 -2.703 H21 XNF 60 N N N XNF H22 H19 H 0 1 N N N -3.204 1.495 15.885 -7.349 1.189 -2.384 H22 XNF 61 N N N XNF H26A H20 H 0 0 N N N -5.826 -1.256 16.615 -10.837 -0.009 0.215 H26A XNF 62 N N N XNF H26B H21 H 0 0 N N N -5.734 -0.557 15.141 -9.726 -0.676 -0.855 H26B XNF 63 N N N XNF H28 H22 H 0 1 N N N -7.083 3.251 15.610 -7.071 0.332 1.785 H28 XNF 64 N N N XNF H29 H23 H 0 1 N N N -6.134 5.135 14.373 -4.756 -0.445 1.477 H29 XNF 65 N N N XNF H30 H24 H 0 1 N N N -3.057 7.857 14.912 -1.144 -0.445 -1.813 H30 XNF 66 N N N XNF H31 H25 H 0 1 N N N -1.628 9.794 15.366 1.144 0.463 -1.815 H31 XNF 67 N N N XNF H32 H26 H 0 1 N N N 2.039 9.160 15.166 3.017 0.451 -1.688 H32 XNF 68 N N N XNF H34 H27 H 0 1 N N N 0.818 12.273 16.003 5.027 -0.438 -2.701 H34 XNF 69 N N N XNF H35 H28 H 0 1 N N N 1.454 13.365 18.119 7.337 -1.223 -2.379 H35 XNF 70 N N N XNF H39A H29 H 0 0 N N N 4.728 14.649 20.303 10.839 -0.029 0.203 H39A XNF 71 N N N XNF H39B H30 H 0 0 N N N 5.217 13.851 18.965 9.732 0.636 -0.872 H39B XNF 72 N N N XNF H41 H31 H 0 1 N N N 4.660 10.570 18.587 7.072 -0.325 1.783 H41 XNF 73 N N N XNF H42 H32 H 0 1 N N N 4.024 9.491 16.468 4.763 0.468 1.471 H42 XNF 74 N N N # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XNF O1 P2 DOUB N N 1 XNF P2 O3 SING N N 2 XNF O3 C4 SING N N 3 XNF P2 O5 SING N N 4 XNF O5 C6 SING N N 5 XNF P2 C7 SING N N 6 XNF C7 C8 SING N N 7 XNF C8 C9 DOUB Y N 8 XNF C9 C10 SING Y N 9 XNF C10 C11 DOUB Y N 10 XNF C11 C12 SING N N 11 XNF C12 P13 SING N N 12 XNF P13 O14 SING N N 13 XNF O14 C15 SING N N 14 XNF P13 O16 SING N N 15 XNF O16 C17 SING N N 16 XNF P13 O18 DOUB N N 17 XNF C12 N19 SING N N 18 XNF N19 C20 SING N N 19 XNF C20 C21 DOUB Y N 20 XNF C21 C22 SING Y N 21 XNF C22 C23 DOUB Y N 22 XNF C23 S24 SING N N 23 XNF S24 O25 DOUB N N 24 XNF S24 N26 SING N N 25 XNF S24 O27 DOUB N N 26 XNF C23 C28 SING Y N 27 XNF C28 C29 DOUB Y N 28 XNF C11 C30 SING Y N 29 XNF C30 C31 DOUB Y N 30 XNF C7 N32 SING N N 31 XNF N32 C33 SING N N 32 XNF C33 C34 DOUB Y N 33 XNF C34 C35 SING Y N 34 XNF C35 C36 DOUB Y N 35 XNF C36 S37 SING N N 36 XNF S37 O38 DOUB N N 37 XNF S37 N39 SING N N 38 XNF S37 O40 DOUB N N 39 XNF C36 C41 SING Y N 40 XNF C41 C42 DOUB Y N 41 XNF C31 C8 SING Y N 42 XNF C29 C20 SING Y N 43 XNF C42 C33 SING Y N 44 XNF C4 H4C SING N N 45 XNF C4 H4A SING N N 46 XNF C4 H4B SING N N 47 XNF C6 H6C SING N N 48 XNF C6 H6B SING N N 49 XNF C6 H6A SING N N 50 XNF C7 H7 SING N N 51 XNF C9 H9 SING N N 52 XNF C10 H10 SING N N 53 XNF C12 H12 SING N N 54 XNF C15 H15A SING N N 55 XNF C15 H15C SING N N 56 XNF C15 H15B SING N N 57 XNF C17 H17C SING N N 58 XNF C17 H17B SING N N 59 XNF C17 H17A SING N N 60 XNF N19 H19 SING N N 61 XNF C21 H21 SING N N 62 XNF C22 H22 SING N N 63 XNF N26 H26A SING N N 64 XNF N26 H26B SING N N 65 XNF C28 H28 SING N N 66 XNF C29 H29 SING N N 67 XNF C30 H30 SING N N 68 XNF C31 H31 SING N N 69 XNF N32 H32 SING N N 70 XNF C34 H34 SING N N 71 XNF C35 H35 SING N N 72 XNF N39 H39A SING N N 73 XNF N39 H39B SING N N 74 XNF C41 H41 SING N N 75 XNF C42 H42 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XNF InChI InChI 1.06 "InChI=1S/C24H32N4O10P2S2/c1-35-39(29,36-2)23(27-19-9-13-21(14-10-19)41(25,31)32)17-5-7-18(8-6-17)24(40(30,37-3)38-4)28-20-11-15-22(16-12-20)42(26,33)34/h5-16,23-24,27-28H,1-4H3,(H2,25,31,32)(H2,26,33,34)/t23-,24+" XNF InChIKey InChI 1.06 WAFYATGDBDLIRD-PSWAGMNNSA-N XNF SMILES_CANONICAL CACTVS 3.385 "CO[P](=O)(OC)[C@H](Nc1ccc(cc1)[S](N)(=O)=O)c2ccc(cc2)[C@@H](Nc3ccc(cc3)[S](N)(=O)=O)[P](=O)(OC)OC" XNF SMILES CACTVS 3.385 "CO[P](=O)(OC)[CH](Nc1ccc(cc1)[S](N)(=O)=O)c2ccc(cc2)[CH](Nc3ccc(cc3)[S](N)(=O)=O)[P](=O)(OC)OC" XNF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COP(=O)([C@@H](c1ccc(cc1)[C@@H](Nc2ccc(cc2)S(=O)(=O)N)P(=O)(OC)OC)Nc3ccc(cc3)S(=O)(=O)N)OC" XNF SMILES "OpenEye OEToolkits" 2.0.7 "COP(=O)(C(c1ccc(cc1)C(Nc2ccc(cc2)S(=O)(=O)N)P(=O)(OC)OC)Nc3ccc(cc3)S(=O)(=O)N)OC" # _pdbx_chem_comp_identifier.comp_id XNF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[(~{S})-dimethoxyphosphoryl-[4-[(~{S})-dimethoxyphosphoryl-[(4-sulfamoylphenyl)amino]methyl]phenyl]methyl]amino]benzenesulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XNF "Create component" 2023-11-06 PDBE XNF "Initial release" 2024-11-13 RCSB #