data_XNJ
#
_chem_comp.id XNJ
_chem_comp.name "N-(4-methyl-3-{[4-(pyridin-3-yl)-1,3-thiazol-2-yl]amino}phenyl)-4-[(piperazin-1-yl)methyl]benzamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H28 N6 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "demethylated masitinib"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-22
_chem_comp.pdbx_modified_date 2020-12-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 484.616
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XNJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7L5D
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XNJ CBE C1 C 0 1 N N N 19.206 5.811 24.259 8.699 2.084 -0.460 CBE XNJ 1
XNJ CBF C2 C 0 1 N N N 19.898 6.132 22.956 9.792 1.561 0.475 CBF XNJ 2
XNJ NBG N1 N 0 1 N N N 18.963 6.706 21.997 9.370 1.746 1.870 NBG XNJ 3
XNJ CBH C3 C 0 1 N N N 18.378 7.913 22.565 8.116 1.029 2.138 CBH XNJ 4
XNJ CBI C4 C 0 1 N N N 17.679 7.615 23.869 7.023 1.552 1.204 CBI XNJ 5
XNJ NBD N2 N 0 1 N N N 18.601 7.014 24.834 7.445 1.367 -0.192 NBD XNJ 6
XNJ CBC C5 C 0 1 N N N 17.958 6.752 26.129 6.388 1.789 -1.122 CBC XNJ 7
XNJ CAZ C6 C 0 1 Y N N 16.708 5.901 26.067 5.202 0.870 -0.984 CAZ XNJ 8
XNJ CBA C7 C 0 1 Y N N 15.453 6.484 25.924 5.120 -0.271 -1.763 CBA XNJ 9
XNJ CBB C8 C 0 1 Y N N 14.309 5.708 25.871 4.037 -1.117 -1.642 CBB XNJ 10
XNJ CAY C9 C 0 1 Y N N 16.783 4.518 26.193 4.202 1.168 -0.076 CAY XNJ 11
XNJ CAX C10 C 0 1 Y N N 15.637 3.742 26.149 3.113 0.330 0.056 CAX XNJ 12
XNJ CAV C11 C 0 1 Y N N 14.392 4.330 25.980 3.022 -0.819 -0.731 CAV XNJ 13
XNJ CAU C12 C 0 1 N N N 13.169 3.473 25.943 1.858 -1.721 -0.596 CAU XNJ 14
XNJ OAW O1 O 0 1 N N N 13.202 2.317 26.349 1.784 -2.723 -1.279 OAW XNJ 15
XNJ NAT N3 N 0 1 N N N 12.061 4.023 25.401 0.880 -1.431 0.285 NAT XNJ 16
XNJ CAO C13 C 0 1 Y N N 10.840 3.345 25.215 -0.267 -2.229 0.344 CAO XNJ 17
XNJ CAN C14 C 0 1 Y N N 10.504 2.878 23.953 -1.503 -1.652 0.599 CAN XNJ 18
XNJ CAP C15 C 0 1 Y N N 9.987 3.121 26.289 -0.170 -3.600 0.142 CAP XNJ 19
XNJ CAQ C16 C 0 1 Y N N 8.802 2.436 26.096 -1.303 -4.390 0.200 CAQ XNJ 20
XNJ CAR C17 C 0 1 Y N N 8.438 1.962 24.835 -2.534 -3.820 0.459 CAR XNJ 21
XNJ CAS C18 C 0 1 N N N 7.138 1.229 24.662 -3.766 -4.685 0.522 CAS XNJ 22
XNJ CAM C19 C 0 1 Y N N 9.303 2.199 23.763 -2.638 -2.448 0.657 CAM XNJ 23
XNJ NAL N4 N 0 1 N N N 8.966 1.708 22.484 -3.885 -1.871 0.914 NAL XNJ 24
XNJ CAJ C20 C 0 1 Y N N 9.800 1.211 21.533 -4.239 -0.682 0.296 CAJ XNJ 25
XNJ NAK N5 N 0 1 Y N N 9.386 0.906 20.339 -5.314 -0.001 0.543 NAK XNJ 26
XNJ SAI S1 S 0 1 Y N N 11.489 0.899 21.809 -3.294 0.141 -0.941 SAI XNJ 27
XNJ CAH C21 C 0 1 Y N N 11.612 0.253 20.223 -4.513 1.411 -1.030 CAH XNJ 28
XNJ CAG C22 C 0 1 Y N N 10.414 0.323 19.595 -5.486 1.125 -0.148 CAG XNJ 29
XNJ CAF C23 C 0 1 Y N N 10.119 -0.164 18.244 -6.673 1.995 0.034 CAF XNJ 30
XNJ CAA C24 C 0 1 Y N N 11.072 -0.840 17.491 -7.663 1.661 0.963 CAA XNJ 31
XNJ CAB C25 C 0 1 Y N N 10.761 -1.302 16.232 -8.751 2.506 1.095 CAB XNJ 32
XNJ CAC C26 C 0 1 Y N N 9.496 -1.066 15.746 -8.824 3.643 0.311 CAC XNJ 33
XNJ NAD N6 N 0 1 Y N N 8.549 -0.432 16.452 -7.875 3.932 -0.558 NAD XNJ 34
XNJ CAE C27 C 0 1 Y N N 8.868 0.010 17.673 -6.818 3.162 -0.715 CAE XNJ 35
XNJ H1 H1 H 0 1 N N N 18.420 5.064 24.076 8.552 3.150 -0.286 H1 XNJ 36
XNJ H2 H2 H 0 1 N N N 19.942 5.403 24.968 8.997 1.922 -1.495 H2 XNJ 37
XNJ H3 H3 H 0 1 N N N 20.322 5.208 22.536 9.958 0.501 0.283 H3 XNJ 38
XNJ H4 H4 H 0 1 N N N 20.707 6.853 23.146 10.716 2.111 0.298 H4 XNJ 39
XNJ H5 H5 H 0 1 N N N 18.240 6.045 21.798 9.281 2.726 2.094 H5 XNJ 40
XNJ H7 H7 H 0 1 N N N 19.176 8.649 22.745 8.263 -0.037 1.965 H7 XNJ 41
XNJ H8 H8 H 0 1 N N N 17.649 8.329 21.853 7.818 1.192 3.174 H8 XNJ 42
XNJ H9 H9 H 0 1 N N N 17.282 8.552 24.287 6.099 1.002 1.380 H9 XNJ 43
XNJ H10 H10 H 0 1 N N N 16.850 6.917 23.681 6.857 2.612 1.396 H10 XNJ 44
XNJ H12 H12 H 0 1 N N N 18.687 6.239 26.774 6.086 2.810 -0.889 H12 XNJ 45
XNJ H13 H13 H 0 1 N N N 17.689 7.720 26.577 6.765 1.745 -2.144 H13 XNJ 46
XNJ H14 H14 H 0 1 N N N 15.371 7.559 25.853 5.906 -0.500 -2.467 H14 XNJ 47
XNJ H15 H15 H 0 1 N N N 13.346 6.180 25.744 3.974 -2.007 -2.250 H15 XNJ 48
XNJ H16 H16 H 0 1 N N N 17.745 4.045 26.326 4.274 2.057 0.533 H16 XNJ 49
XNJ H17 H17 H 0 1 N N N 15.713 2.669 26.247 2.333 0.564 0.765 H17 XNJ 50
XNJ H18 H18 H 0 1 N N N 12.111 4.979 25.111 0.971 -0.668 0.877 H18 XNJ 51
XNJ H19 H19 H 0 1 N N N 11.172 3.040 23.120 -1.581 -0.586 0.752 H19 XNJ 52
XNJ H20 H20 H 0 1 N N N 10.249 3.481 27.273 0.791 -4.049 -0.062 H20 XNJ 53
XNJ H21 H21 H 0 1 N N N 8.146 2.265 26.937 -1.225 -5.456 0.043 H21 XNJ 54
XNJ H22 H22 H 0 1 N N N 7.301 0.152 24.814 -3.915 -5.032 1.544 H22 XNJ 55
XNJ H23 H23 H 0 1 N N N 6.409 1.597 25.399 -4.633 -4.106 0.204 H23 XNJ 56
XNJ H24 H24 H 0 1 N N N 6.752 1.401 23.646 -3.641 -5.544 -0.138 H24 XNJ 57
XNJ H25 H25 H 0 1 N N N 7.994 1.728 22.248 -4.502 -2.303 1.525 H25 XNJ 58
XNJ H26 H26 H 0 1 N N N 12.515 -0.151 19.789 -4.480 2.275 -1.677 H26 XNJ 59
XNJ H27 H27 H 0 1 N N N 12.060 -1.003 17.895 -7.580 0.766 1.562 H27 XNJ 60
XNJ H28 H28 H 0 1 N N N 11.491 -1.836 15.641 -9.535 2.280 1.802 H28 XNJ 61
XNJ H29 H29 H 0 1 N N N 9.255 -1.407 14.750 -9.672 4.304 0.411 H29 XNJ 62
XNJ H30 H30 H 0 1 N N N 8.112 0.529 18.244 -6.061 3.432 -1.436 H30 XNJ 63
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XNJ CAC CAB DOUB Y N 1
XNJ CAC NAD SING Y N 2
XNJ CAB CAA SING Y N 3
XNJ NAD CAE DOUB Y N 4
XNJ CAA CAF DOUB Y N 5
XNJ CAE CAF SING Y N 6
XNJ CAF CAG SING N N 7
XNJ CAG CAH DOUB Y N 8
XNJ CAG NAK SING Y N 9
XNJ CAH SAI SING Y N 10
XNJ NAK CAJ DOUB Y N 11
XNJ CAJ SAI SING Y N 12
XNJ CAJ NAL SING N N 13
XNJ NBG CBH SING N N 14
XNJ NBG CBF SING N N 15
XNJ NAL CAM SING N N 16
XNJ CBH CBI SING N N 17
XNJ CBF CBE SING N N 18
XNJ CAM CAN DOUB Y N 19
XNJ CAM CAR SING Y N 20
XNJ CBI NBD SING N N 21
XNJ CAN CAO SING Y N 22
XNJ CBE NBD SING N N 23
XNJ CAS CAR SING N N 24
XNJ NBD CBC SING N N 25
XNJ CAR CAQ DOUB Y N 26
XNJ CAO NAT SING N N 27
XNJ CAO CAP DOUB Y N 28
XNJ NAT CAU SING N N 29
XNJ CBB CBA DOUB Y N 30
XNJ CBB CAV SING Y N 31
XNJ CBA CAZ SING Y N 32
XNJ CAU CAV SING N N 33
XNJ CAU OAW DOUB N N 34
XNJ CAV CAX DOUB Y N 35
XNJ CAZ CBC SING N N 36
XNJ CAZ CAY DOUB Y N 37
XNJ CAQ CAP SING Y N 38
XNJ CAX CAY SING Y N 39
XNJ CBE H1 SING N N 40
XNJ CBE H2 SING N N 41
XNJ CBF H3 SING N N 42
XNJ CBF H4 SING N N 43
XNJ NBG H5 SING N N 44
XNJ CBH H7 SING N N 45
XNJ CBH H8 SING N N 46
XNJ CBI H9 SING N N 47
XNJ CBI H10 SING N N 48
XNJ CBC H12 SING N N 49
XNJ CBC H13 SING N N 50
XNJ CBA H14 SING N N 51
XNJ CBB H15 SING N N 52
XNJ CAY H16 SING N N 53
XNJ CAX H17 SING N N 54
XNJ NAT H18 SING N N 55
XNJ CAN H19 SING N N 56
XNJ CAP H20 SING N N 57
XNJ CAQ H21 SING N N 58
XNJ CAS H22 SING N N 59
XNJ CAS H23 SING N N 60
XNJ CAS H24 SING N N 61
XNJ NAL H25 SING N N 62
XNJ CAH H26 SING N N 63
XNJ CAA H27 SING N N 64
XNJ CAB H28 SING N N 65
XNJ CAC H29 SING N N 66
XNJ CAE H30 SING N N 67
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XNJ SMILES ACDLabs 12.01 "C1N(CCNC1)Cc2ccc(cc2)C(=O)Nc3ccc(C)c(c3)Nc4scc(n4)c5cccnc5"
XNJ InChI InChI 1.03 "InChI=1S/C27H28N6OS/c1-19-4-9-23(15-24(19)31-27-32-25(18-35-27)22-3-2-10-29-16-22)30-26(34)21-7-5-20(6-8-21)17-33-13-11-28-12-14-33/h2-10,15-16,18,28H,11-14,17H2,1H3,(H,30,34)(H,31,32)"
XNJ InChIKey InChI 1.03 LBWSNUMFQJZFGI-UHFFFAOYSA-N
XNJ SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(NC(=O)c2ccc(CN3CCNCC3)cc2)cc1Nc4scc(n4)c5cccnc5"
XNJ SMILES CACTVS 3.385 "Cc1ccc(NC(=O)c2ccc(CN3CCNCC3)cc2)cc1Nc4scc(n4)c5cccnc5"
XNJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Nc2nc(cs2)c3cccnc3)NC(=O)c4ccc(cc4)CN5CCNCC5"
XNJ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Nc2nc(cs2)c3cccnc3)NC(=O)c4ccc(cc4)CN5CCNCC5"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XNJ "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-methyl-3-{[4-(pyridin-3-yl)-1,3-thiazol-2-yl]amino}phenyl)-4-[(piperazin-1-yl)methyl]benzamide"
XNJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[4-methyl-3-[(4-pyridin-3-yl-1,3-thiazol-2-yl)amino]phenyl]-4-(piperazin-1-ylmethyl)benzamide"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id XNJ
_pdbx_chem_comp_synonyms.name "demethylated masitinib"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XNJ "Create component" 2020-12-22 RCSB
XNJ "Initial release" 2020-12-30 RCSB
##