data_XNM
#
_chem_comp.id XNM
_chem_comp.name "(4-{[4-(4-chlorophenyl)pyrimidin-2-yl]amino}phenyl)[4-(2-hydroxyethyl)piperazin-1-yl]methanone"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H24 Cl N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-01-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 437.922
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XNM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3QAD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XNM CLAA CLAA CL 0 0 N N N 92.499 -29.366 55.039 -9.965 -1.680 -0.167 CLAA XNM 1
XNM CAB CAB C 0 1 Y N N 91.970 -27.901 54.294 -8.367 -1.001 -0.144 CAB XNM 2
XNM CAC CAC C 0 1 Y N N 90.905 -27.224 54.872 -8.179 0.332 -0.466 CAC XNM 3
XNM CAD CAD C 0 1 Y N N 90.454 -26.042 54.298 -6.911 0.876 -0.450 CAD XNM 4
XNM CAE CAE C 0 1 Y N N 92.588 -27.399 53.145 -7.286 -1.794 0.201 CAE XNM 5
XNM CAF CAF C 0 1 Y N N 92.133 -26.209 52.570 -6.014 -1.259 0.221 CAF XNM 6
XNM CAG CAG C 0 1 Y N N 91.061 -25.525 53.154 -5.818 0.081 -0.108 CAG XNM 7
XNM CAH CAH C 0 1 Y N N 90.547 -24.340 52.626 -4.454 0.661 -0.089 CAH XNM 8
XNM NAI NAI N 0 1 Y N N 90.126 -23.367 53.447 -3.405 -0.090 0.243 NAI XNM 9
XNM CAJ CAJ C 0 1 Y N N 89.552 -22.088 52.979 -2.186 0.425 0.260 CAJ XNM 10
XNM NAK NAK N 0 1 N N N 90.397 -20.993 53.475 -1.117 -0.384 0.609 NAK XNM 11
XNM CAL CAL C 0 1 Y N N 89.938 -19.944 54.159 0.184 0.107 0.525 CAL XNM 12
XNM CAM CAM C 0 1 Y N N 88.573 -19.694 54.345 0.519 1.017 -0.473 CAM XNM 13
XNM CAN CAN C 0 1 Y N N 88.159 -18.574 55.070 1.804 1.504 -0.559 CAN XNM 14
XNM OAO OAO O 0 1 N N N 88.587 -15.373 55.830 4.341 2.792 0.095 OAO XNM 15
XNM CAP CAP C 0 1 Y N N 90.428 -24.168 51.257 -4.248 2.002 -0.423 CAP XNM 16
XNM CAQ CAQ C 0 1 Y N N 89.894 -22.988 50.751 -2.956 2.498 -0.391 CAQ XNM 17
XNM NAR NAR N 0 1 Y N N 89.460 -21.970 51.506 -1.962 1.695 -0.047 NAR XNM 18
XNM CAS CAS C 0 1 Y N N 90.882 -19.075 54.696 1.144 -0.310 1.443 CAS XNM 19
XNM CAT CAT C 0 1 Y N N 90.472 -17.960 55.416 2.430 0.174 1.363 CAT XNM 20
XNM CAU CAU C 0 1 Y N N 89.114 -17.707 55.609 2.772 1.084 0.358 CAU XNM 21
XNM CAV CAV C 0 1 N N N 88.717 -16.453 56.414 4.150 1.603 0.269 CAV XNM 22
XNM NAW NAW N 0 1 N N N 88.532 -16.510 57.749 5.196 0.761 0.380 NAW XNM 23
XNM CAX CAX C 0 1 N N N 88.690 -17.794 58.498 6.575 1.243 0.206 CAX XNM 24
XNM CAY CAY C 0 1 N N N 88.504 -17.560 60.010 7.282 0.338 -0.808 CAY XNM 25
XNM CAZ CAZ C 0 1 N N N 88.165 -15.270 58.499 4.990 -0.663 0.684 CAZ XNM 26
XNM CBA CBA C 0 1 N N N 87.058 -15.541 59.532 5.757 -1.497 -0.348 CBA XNM 27
XNM NBB NBB N 0 1 N N N 87.280 -16.779 60.320 7.163 -1.061 -0.378 NBB XNM 28
XNM CBC CBC C 0 1 N N N 86.071 -17.628 60.338 7.973 -1.944 -1.228 CBC XNM 29
XNM CBD CBD C 0 1 N N N 85.314 -17.446 61.660 9.449 -1.803 -0.850 CBD XNM 30
XNM OBE OBE O 0 1 N N N 85.626 -18.524 62.551 9.646 -2.273 0.485 OBE XNM 31
XNM HAC HAC H 0 1 N N N 90.431 -27.613 55.761 -9.026 0.948 -0.731 HAC XNM 32
XNM HAD HAD H 0 1 N N N 89.622 -25.517 54.744 -6.766 1.916 -0.702 HAD XNM 33
XNM HAE HAE H 0 1 N N N 93.417 -27.931 52.702 -7.438 -2.832 0.456 HAE XNM 34
XNM HAF HAF H 0 1 N N N 92.606 -25.820 51.680 -5.171 -1.878 0.491 HAF XNM 35
XNM HNAK HNAK H 0 0 N N N 91.378 -21.037 53.288 -1.274 -1.292 0.912 HNAK XNM 36
XNM HAM HAM H 0 1 N N N 87.839 -20.368 53.928 -0.229 1.341 -1.181 HAM XNM 37
XNM HAN HAN H 0 1 N N N 87.106 -18.379 55.213 2.064 2.209 -1.334 HAN XNM 38
XNM HAP HAP H 0 1 N N N 90.749 -24.949 50.584 -5.077 2.636 -0.700 HAP XNM 39
XNM HAQ HAQ H 0 1 N N N 89.825 -22.885 49.678 -2.762 3.530 -0.644 HAQ XNM 40
XNM HAS HAS H 0 1 N N N 91.935 -19.267 54.553 0.879 -1.013 2.219 HAS XNM 41
XNM HAT HAT H 0 1 N N N 91.208 -17.286 55.828 3.174 -0.149 2.076 HAT XNM 42
XNM HAX HAX H 0 1 N N N 87.934 -18.512 58.148 6.560 2.268 -0.165 HAX XNM 43
XNM HAXA HAXA H 0 0 N N N 89.697 -18.197 58.316 7.099 1.204 1.161 HAXA XNM 44
XNM HAY HAY H 0 1 N N N 88.428 -18.538 60.507 6.820 0.458 -1.788 HAY XNM 45
XNM HAYA HAYA H 0 0 N N N 89.376 -17.005 60.386 8.336 0.613 -0.867 HAYA XNM 46
XNM HAZ HAZ H 0 1 N N N 89.056 -14.897 59.025 5.365 -0.882 1.684 HAZ XNM 47
XNM HAZA HAZA H 0 0 N N N 87.805 -14.517 57.783 3.927 -0.899 0.629 HAZA XNM 48
XNM HBA HBA H 0 1 N N N 87.023 -14.691 60.230 5.706 -2.551 -0.074 HBA XNM 49
XNM HBAA HBAA H 0 0 N N N 86.104 -15.642 58.995 5.312 -1.355 -1.333 HBAA XNM 50
XNM HBC HBC H 0 1 N N N 85.415 -17.341 59.503 7.658 -2.977 -1.083 HBC XNM 51
XNM HBCA HBCA H 0 0 N N N 86.367 -18.682 60.233 7.837 -1.666 -2.273 HBCA XNM 52
XNM HBD HBD H 0 1 N N N 85.612 -16.493 62.122 10.057 -2.393 -1.536 HBD XNM 53
XNM HBDA HBDA H 0 0 N N N 84.232 -17.438 61.462 9.742 -0.755 -0.914 HBDA XNM 54
XNM HOBE HOBE H 0 0 N N N 85.155 -18.407 63.368 10.561 -2.213 0.792 HOBE XNM 55
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XNM CAB CLAA SING N N 1
XNM CAE CAB DOUB Y N 2
XNM CAB CAC SING Y N 3
XNM CAD CAC DOUB Y N 4
XNM CAC HAC SING N N 5
XNM CAG CAD SING Y N 6
XNM CAD HAD SING N N 7
XNM CAF CAE SING Y N 8
XNM CAE HAE SING N N 9
XNM CAF CAG DOUB Y N 10
XNM CAF HAF SING N N 11
XNM CAH CAG SING Y N 12
XNM CAP CAH DOUB Y N 13
XNM CAH NAI SING Y N 14
XNM CAJ NAI DOUB Y N 15
XNM NAR CAJ SING Y N 16
XNM CAJ NAK SING N N 17
XNM NAK CAL SING N N 18
XNM NAK HNAK SING N N 19
XNM CAL CAM DOUB Y N 20
XNM CAL CAS SING Y N 21
XNM CAM CAN SING Y N 22
XNM CAM HAM SING N N 23
XNM CAN CAU DOUB Y N 24
XNM CAN HAN SING N N 25
XNM OAO CAV DOUB N N 26
XNM CAQ CAP SING Y N 27
XNM CAP HAP SING N N 28
XNM CAQ NAR DOUB Y N 29
XNM CAQ HAQ SING N N 30
XNM CAS CAT DOUB Y N 31
XNM CAS HAS SING N N 32
XNM CAT CAU SING Y N 33
XNM CAT HAT SING N N 34
XNM CAU CAV SING N N 35
XNM CAV NAW SING N N 36
XNM NAW CAX SING N N 37
XNM NAW CAZ SING N N 38
XNM CAX CAY SING N N 39
XNM CAX HAX SING N N 40
XNM CAX HAXA SING N N 41
XNM CAY NBB SING N N 42
XNM CAY HAY SING N N 43
XNM CAY HAYA SING N N 44
XNM CAZ CBA SING N N 45
XNM CAZ HAZ SING N N 46
XNM CAZ HAZA SING N N 47
XNM CBA NBB SING N N 48
XNM CBA HBA SING N N 49
XNM CBA HBAA SING N N 50
XNM NBB CBC SING N N 51
XNM CBC CBD SING N N 52
XNM CBC HBC SING N N 53
XNM CBC HBCA SING N N 54
XNM CBD OBE SING N N 55
XNM CBD HBD SING N N 56
XNM CBD HBDA SING N N 57
XNM OBE HOBE SING N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XNM SMILES ACDLabs 12.01 "Clc1ccc(cc1)c2nc(ncc2)Nc3ccc(cc3)C(=O)N4CCN(CCO)CC4"
XNM SMILES_CANONICAL CACTVS 3.370 "OCCN1CCN(CC1)C(=O)c2ccc(Nc3nccc(n3)c4ccc(Cl)cc4)cc2"
XNM SMILES CACTVS 3.370 "OCCN1CCN(CC1)C(=O)c2ccc(Nc3nccc(n3)c4ccc(Cl)cc4)cc2"
XNM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1c2ccnc(n2)Nc3ccc(cc3)C(=O)N4CCN(CC4)CCO)Cl"
XNM SMILES "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1c2ccnc(n2)Nc3ccc(cc3)C(=O)N4CCN(CC4)CCO)Cl"
XNM InChI InChI 1.03 "InChI=1S/C23H24ClN5O2/c24-19-5-1-17(2-6-19)21-9-10-25-23(27-21)26-20-7-3-18(4-8-20)22(31)29-13-11-28(12-14-29)15-16-30/h1-10,30H,11-16H2,(H,25,26,27)"
XNM InChIKey InChI 1.03 HMSMXFYWPQNMCE-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XNM "SYSTEMATIC NAME" ACDLabs 12.01 "(4-{[4-(4-chlorophenyl)pyrimidin-2-yl]amino}phenyl)[4-(2-hydroxyethyl)piperazin-1-yl]methanone"
XNM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[4-[[4-(4-chlorophenyl)pyrimidin-2-yl]amino]phenyl]-[4-(2-hydroxyethyl)piperazin-1-yl]methanone"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XNM "Create component" 2011-01-14 RCSB
XNM "Modify aromatic_flag" 2011-06-04 RCSB
XNM "Modify descriptor" 2011-06-04 RCSB
#