data_XNP # _chem_comp.id XNP _chem_comp.name "Tricyclic NADPH" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 N7 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-01-07 _chem_comp.pdbx_modified_date 2017-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 745.421 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5HF2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XNP "O3'" O1 O 0 1 N N N -5.627 32.070 13.090 -6.978 3.991 -0.734 "O3'" XNP 1 XNP "C3'" C1 C 0 1 N N R -5.475 32.001 11.646 -6.863 2.917 0.201 "C3'" XNP 2 XNP "C2'" C2 C 0 1 N N R -4.150 32.536 11.127 -7.962 1.891 -0.019 "C2'" XNP 3 XNP "O2'" O2 O 0 1 N N N -3.015 32.619 12.026 -9.154 2.195 -0.716 "O2'" XNP 4 XNP CAA C3 C 0 1 N N R -2.033 31.700 11.353 -9.528 0.940 -1.346 CAA XNP 5 XNP CAB C4 C 0 1 N N N -0.570 32.028 11.449 -10.529 0.186 -0.466 CAB XNP 6 XNP CAC C5 C 0 1 N N N 0.124 30.851 10.733 -10.804 -1.181 -1.095 CAC XNP 7 XNP CAD C6 C 0 1 N N N -0.453 30.550 9.475 -9.533 -1.894 -1.454 CAD XNP 8 XNP CBT C7 C 0 1 N N N 0.219 29.793 8.508 -9.574 -3.295 -1.645 CBT XNP 9 XNP OBV O3 O 0 1 N N N -0.289 29.590 7.394 -8.558 -3.900 -1.937 OBV XNP 10 XNP NBU N1 N 0 1 N N N 1.431 29.358 8.852 -10.738 -3.960 -1.505 NBU XNP 11 XNP CAE C8 C 0 1 N N N -1.748 30.944 9.154 -8.353 -1.257 -1.601 CAE XNP 12 XNP NAF N2 N 0 1 N N N -2.458 31.741 9.948 -8.300 0.085 -1.390 NAF XNP 13 XNP "C1'" C9 C 0 1 N N R -3.696 31.220 10.445 -7.245 0.998 -1.108 "C1'" XNP 14 XNP "O4'" O4 O 0 1 N N N -4.818 30.760 9.795 -6.005 0.768 -0.504 "O4'" XNP 15 XNP "C4'" C10 C 0 1 N N R -5.386 30.547 11.116 -5.571 2.089 -0.063 "C4'" XNP 16 XNP "C5'" C11 C 0 1 N N N -6.730 29.854 11.143 -4.752 1.970 1.224 "C5'" XNP 17 XNP "O5'" O5 O 0 1 N N N -7.555 30.481 10.192 -3.516 1.311 0.943 "O5'" XNP 18 XNP PAN P1 P 0 1 N N N -7.697 29.938 8.688 -2.404 1.015 2.069 PAN XNP 19 XNP OBP O6 O 0 1 N N N -9.312 29.878 8.453 -3.020 0.259 3.183 OBP XNP 20 XNP OBO O7 O 0 1 N N N -7.059 28.627 8.460 -1.819 2.408 2.625 OBO XNP 21 XNP OAO O8 O 0 1 N N N -7.188 31.188 7.844 -1.208 0.149 1.429 OAO XNP 22 XNP PAP P2 P 0 1 N N N -6.865 31.111 6.285 -0.056 -0.792 2.043 PAP XNP 23 XNP OBQ O9 O 0 1 N N N -5.848 32.199 5.803 0.479 -0.175 3.277 OBQ XNP 24 XNP OBR O10 O 0 1 N N N -7.610 30.190 5.403 -0.671 -2.239 2.390 OBR XNP 25 XNP OAQ O11 O 0 1 N N N -7.999 32.303 6.077 1.132 -0.958 0.968 OAQ XNP 26 XNP CAR C12 C 0 1 N N N -9.447 32.073 6.192 2.349 -1.651 1.253 CAR XNP 27 XNP CAS C13 C 0 1 N N R -10.258 33.129 5.379 3.253 -1.621 0.019 CAS XNP 28 XNP OAW O12 O 0 1 N N N -10.057 32.985 3.944 3.676 -0.273 -0.245 OAW XNP 29 XNP CAT C14 C 0 1 N N R -11.763 32.917 5.480 4.522 -2.456 0.280 CAT XNP 30 XNP OAZ O13 O 0 1 N N N -12.285 33.405 6.726 4.619 -3.525 -0.664 OAZ XNP 31 XNP CAU C15 C 0 1 N N R -12.219 33.787 4.317 5.684 -1.452 0.082 CAU XNP 32 XNP OAY O14 O 0 1 N N N -11.899 35.142 4.501 6.768 -2.060 -0.623 OAY XNP 33 XNP PBA P3 P 0 1 N N N -13.179 36.104 4.900 8.257 -2.166 -0.019 PBA XNP 34 XNP OBB O15 O 0 1 N N N -12.535 37.557 4.990 8.207 -2.838 1.299 OBB XNP 35 XNP OBC O16 O 0 1 N N N -13.595 35.660 6.368 9.183 -3.020 -1.021 OBC XNP 36 XNP OBD O17 O 0 1 N N N -14.268 35.974 3.901 8.873 -0.689 0.154 OBD XNP 37 XNP CAV C16 C 0 1 N N R -11.337 33.207 3.265 5.016 -0.347 -0.775 CAV XNP 38 XNP NAX N3 N 0 1 Y N N -12.030 31.996 2.815 5.712 0.931 -0.603 NAX XNP 39 XNP CBE C17 C 0 1 Y N N -11.163 30.832 2.633 5.423 1.887 0.325 CBE XNP 40 XNP NBF N4 N 0 1 Y N N -12.003 30.047 1.671 6.239 2.892 0.196 NBF XNP 41 XNP CBG C18 C 0 1 Y N N -12.792 30.899 1.000 7.101 2.645 -0.820 CBG XNP 42 XNP CBH C19 C 0 1 Y N N -12.399 32.158 1.426 6.777 1.382 -1.340 CBH XNP 43 XNP NBL N5 N 0 1 Y N N -13.271 33.272 0.979 7.488 0.899 -2.354 NBL XNP 44 XNP CBK C20 C 0 1 Y N N -14.146 33.071 -0.087 8.484 1.591 -2.864 CBK XNP 45 XNP NBJ N6 N 0 1 Y N N -14.356 31.761 -0.551 8.829 2.781 -2.407 NBJ XNP 46 XNP CBI C21 C 0 1 Y N N -13.669 30.744 0.006 8.171 3.348 -1.401 CBI XNP 47 XNP NBM N7 N 0 1 N N N -13.846 29.502 -0.413 8.540 4.595 -0.927 NBM XNP 48 XNP H1 H1 H 0 1 N N N -6.475 31.720 13.337 -6.299 4.673 -0.635 H1 XNP 49 XNP H2 H2 H 0 1 N N N -6.305 32.520 11.144 -6.884 3.292 1.224 H2 XNP 50 XNP H3 H3 H 0 1 N N N -4.253 33.378 10.427 -8.171 1.337 0.896 H3 XNP 51 XNP H4 H4 H 0 1 N N N -2.187 30.683 11.742 -9.934 1.110 -2.343 H4 XNP 52 XNP H5 H5 H 0 1 N N N -0.348 32.979 10.943 -10.110 0.052 0.532 H5 XNP 53 XNP H6 H6 H 0 1 N N N -0.251 32.089 12.500 -11.458 0.752 -0.402 H6 XNP 54 XNP H7 H7 H 0 1 N N N 1.182 31.109 10.580 -11.366 -1.791 -0.389 H7 XNP 55 XNP H8 H8 H 0 1 N N N 0.052 29.960 11.374 -11.400 -1.043 -1.997 H8 XNP 56 XNP H9 H9 H 0 1 N N N 1.980 28.839 8.197 -11.547 -3.479 -1.273 H9 XNP 57 XNP H10 H10 H 0 1 N N N 1.791 29.551 9.765 -10.766 -4.921 -1.636 H10 XNP 58 XNP H11 H11 H 0 1 N N N -2.190 30.593 8.233 -7.465 -1.804 -1.881 H11 XNP 59 XNP H12 H12 H 0 1 N N N -3.458 30.520 11.259 -7.080 1.621 -1.987 H12 XNP 60 XNP H13 H13 H 0 1 N N N -4.678 29.986 11.743 -4.975 2.566 -0.842 H13 XNP 61 XNP H14 H14 H 0 1 N N N -6.608 28.791 10.890 -4.552 2.966 1.620 H14 XNP 62 XNP H15 H15 H 0 1 N N N -7.177 29.944 12.144 -5.313 1.393 1.959 H15 XNP 63 XNP H16 H16 H 0 1 N N N -7.721 27.990 8.217 -1.400 2.957 1.948 H16 XNP 64 XNP H17 H17 H 0 1 N N N -7.377 30.360 4.498 -1.041 -2.702 1.626 H17 XNP 65 XNP H18 H18 H 0 1 N N N -9.681 31.069 5.808 2.856 -1.166 2.087 H18 XNP 66 XNP H19 H19 H 0 1 N N N -9.737 32.138 7.251 2.125 -2.685 1.515 H19 XNP 67 XNP H20 H20 H 0 1 N N N -9.993 34.141 5.718 2.717 -2.017 -0.843 H20 XNP 68 XNP H21 H21 H 0 1 N N N -12.022 31.862 5.306 4.520 -2.845 1.298 H21 XNP 69 XNP H22 H22 H 0 1 N N N -13.223 33.258 6.756 3.885 -4.153 -0.623 H22 XNP 70 XNP H23 H23 H 0 1 N N N -13.283 33.622 4.091 6.019 -1.053 1.039 H23 XNP 71 XNP H24 H24 H 0 1 N N N -13.373 36.350 6.983 10.096 -3.125 -0.720 H24 XNP 72 XNP H25 H25 H 0 1 N N N -14.402 36.809 3.468 8.935 -0.190 -0.672 H25 XNP 73 XNP H26 H26 H 0 1 N N N -11.217 33.917 2.433 4.997 -0.636 -1.826 H26 XNP 74 XNP H27 H27 H 0 1 N N N -10.200 30.605 3.065 4.633 1.821 1.058 H27 XNP 75 XNP H30 H30 H 0 1 N N N -14.653 33.906 -0.548 9.042 1.169 -3.687 H30 XNP 76 XNP H31 H31 H 0 1 N N N -14.524 29.491 -1.148 8.058 4.994 -0.185 H31 XNP 77 XNP H32 H32 H 0 1 N N N -12.979 29.139 -0.754 9.280 5.070 -1.337 H32 XNP 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XNP "O3'" "C3'" SING N N 1 XNP "C3'" "C2'" SING N N 2 XNP "C3'" "C4'" SING N N 3 XNP "C2'" "O2'" SING N N 4 XNP "C2'" "C1'" SING N N 5 XNP "O2'" CAA SING N N 6 XNP CAA CAB SING N N 7 XNP CAA NAF SING N N 8 XNP CAB CAC SING N N 9 XNP CAC CAD SING N N 10 XNP CAD CBT SING N N 11 XNP CAD CAE DOUB N N 12 XNP CBT OBV DOUB N N 13 XNP CBT NBU SING N N 14 XNP CAE NAF SING N N 15 XNP NAF "C1'" SING N N 16 XNP "C1'" "O4'" SING N N 17 XNP "O4'" "C4'" SING N N 18 XNP "C4'" "C5'" SING N N 19 XNP "C5'" "O5'" SING N N 20 XNP "O5'" PAN SING N N 21 XNP PAN OBP DOUB N N 22 XNP PAN OBO SING N N 23 XNP PAN OAO SING N N 24 XNP OAO PAP SING N N 25 XNP PAP OBQ DOUB N N 26 XNP PAP OBR SING N N 27 XNP PAP OAQ SING N N 28 XNP OAQ CAR SING N N 29 XNP CAR CAS SING N N 30 XNP CAS OAW SING N N 31 XNP CAS CAT SING N N 32 XNP OAW CAV SING N N 33 XNP CAT OAZ SING N N 34 XNP CAT CAU SING N N 35 XNP CAU OAY SING N N 36 XNP CAU CAV SING N N 37 XNP OAY PBA SING N N 38 XNP PBA OBB DOUB N N 39 XNP PBA OBC SING N N 40 XNP PBA OBD SING N N 41 XNP CAV NAX SING N N 42 XNP NAX CBE SING Y N 43 XNP NAX CBH SING Y N 44 XNP CBE NBF DOUB Y N 45 XNP NBF CBG SING Y N 46 XNP CBG CBH DOUB Y N 47 XNP CBG CBI SING Y N 48 XNP CBH NBL SING Y N 49 XNP NBL CBK DOUB Y N 50 XNP CBK NBJ SING Y N 51 XNP NBJ CBI DOUB Y N 52 XNP CBI NBM SING N N 53 XNP "O3'" H1 SING N N 54 XNP "C3'" H2 SING N N 55 XNP "C2'" H3 SING N N 56 XNP CAA H4 SING N N 57 XNP CAB H5 SING N N 58 XNP CAB H6 SING N N 59 XNP CAC H7 SING N N 60 XNP CAC H8 SING N N 61 XNP NBU H9 SING N N 62 XNP NBU H10 SING N N 63 XNP CAE H11 SING N N 64 XNP "C1'" H12 SING N N 65 XNP "C4'" H13 SING N N 66 XNP "C5'" H14 SING N N 67 XNP "C5'" H15 SING N N 68 XNP OBO H16 SING N N 69 XNP OBR H17 SING N N 70 XNP CAR H18 SING N N 71 XNP CAR H19 SING N N 72 XNP CAS H20 SING N N 73 XNP CAT H21 SING N N 74 XNP OAZ H22 SING N N 75 XNP CAU H23 SING N N 76 XNP OBC H24 SING N N 77 XNP OBD H25 SING N N 78 XNP CAV H26 SING N N 79 XNP CBE H27 SING N N 80 XNP CBK H30 SING N N 81 XNP NBM H31 SING N N 82 XNP NBM H32 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XNP InChI InChI 1.03 ;InChI=1S/C21H30N7O17P3/c22-17-12-19(25-6-24-17)28(7-26-12)21-16(44-46(32,33)34)14(30)10(42-21)5-40-48(37,38)45-47(35,36)39-4-9-13(29)15-20(41-9)27-3-8(18(23)31)1-2-11(27)43-15/h3,6-7,9-11,13-16,20-21,29-30H,1-2,4-5H2,(H2,23,31)(H,35,36)(H,37,38)(H2,22,24,25)(H2,32,33,34)/t9-,10-,11-,13-,14-,15-,16-,20-,21-/m1/s1 ; XNP InChIKey InChI 1.03 AJKICLDTLPZSPE-MTKBYBFRSA-N XNP SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1=CN2[C@@H](CC1)O[C@@H]3[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O[P](O)(O)=O)[C@@H]4O)n5cnc6c(N)ncnc56)O[C@@H]23" XNP SMILES CACTVS 3.385 "NC(=O)C1=CN2[CH](CC1)O[CH]3[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O[P](O)(O)=O)[CH]4O)n5cnc6c(N)ncnc56)O[CH]23" XNP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@@H]5[C@@H](O4)N6C=C(CC[C@H]6O5)C(=O)N)O)O)OP(=O)(O)O)N" XNP SMILES "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C5C(O4)N6C=C(CCC6O5)C(=O)N)O)O)OP(=O)(O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XNP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 ;[[(2~{R},3~{R},3~{a}~{R},4~{a}~{R},9~{a}~{R})-7-aminocarbonyl-3-oxidanyl-3,3~{a},4~{a},5,6,9~{a}-hexahydro-2~{H}-furo[1,2][1,3]oxazolo[3,4-~{a}]pyridin-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XNP "Create component" 2016-01-07 RCSB XNP "Initial release" 2017-01-18 RCSB #