data_XNT # _chem_comp.id XNT _chem_comp.name "7-[(1~{S})-1-[4-(2-azanylethyl)phenoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 Cl N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-06-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 527.032 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XNT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PA3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XNT C01 C1 C 0 1 N N N N N N -22.395 -11.747 15.401 -3.904 0.734 -2.611 C01 XNT 1 XNT C02 C2 C 0 1 N N S N N N -23.602 -12.233 14.564 -3.662 0.784 -1.101 C02 XNT 2 XNT C04 C3 C 0 1 Y N N N N N -25.860 -12.937 15.165 -5.845 0.924 -0.170 C04 XNT 3 XNT C05 C4 C 0 1 Y N N N N N -26.528 -11.996 14.351 -6.035 -0.396 -0.553 C05 XNT 4 XNT C06 C5 C 0 1 Y N N N N N -27.927 -12.061 14.229 -7.213 -1.043 -0.236 C06 XNT 5 XNT C07 C6 C 0 1 Y N N N N N -28.607 -13.038 14.924 -8.203 -0.377 0.463 C07 XNT 6 XNT C08 C7 C 0 1 N N N N N N -30.135 -13.189 14.878 -9.488 -1.085 0.807 C08 XNT 7 XNT C09 C8 C 0 1 N N N N N N -30.774 -13.084 16.270 -9.344 -1.769 2.168 C09 XNT 8 XNT C11 C9 C 0 1 Y N N N N N -27.937 -13.940 15.723 -8.017 0.939 0.846 C11 XNT 9 XNT C12 C10 C 0 1 Y N N N N N -26.580 -13.883 15.846 -6.838 1.589 0.535 C12 XNT 10 XNT C13 C11 C 0 1 Y N N N N N -22.997 -12.977 13.340 -2.319 1.411 -0.827 C13 XNT 11 XNT C14 C12 C 0 1 Y N N N N N -22.741 -12.258 12.159 -1.166 0.630 -0.856 C14 XNT 12 XNT C16 C13 C 0 1 Y N N N N N -22.566 -10.712 10.598 0.400 -0.990 -1.004 C16 XNT 13 XNT C17 C14 C 0 1 N N N N N N -22.753 -9.402 9.920 1.006 -2.310 -1.198 C17 XNT 14 XNT C20 C15 C 0 1 Y N N N N N -22.079 -11.867 10.017 1.086 0.173 -0.703 C20 XNT 15 XNT C21 C16 C 0 1 Y N N N N N -21.504 -11.978 8.607 2.547 0.316 -0.517 C21 XNT 16 XNT C22 C17 C 0 1 Y N N N N N -20.611 -11.014 8.132 3.415 0.094 -1.588 C22 XNT 17 XNT C23 C18 C 0 1 Y N N N N N -20.067 -11.103 6.856 4.776 0.230 -1.409 C23 XNT 18 XNT C24 C19 C 0 1 Y N N N N N -20.392 -12.170 6.038 5.282 0.585 -0.172 C24 XNT 19 XNT C25 C20 C 0 1 N N N N N N -19.784 -12.263 4.627 6.771 0.724 0.018 C25 XNT 20 XNT C27 C21 C 0 1 N N N N N N -21.039 -9.751 3.762 9.231 -0.476 0.685 C27 XNT 21 XNT C30 C22 C 0 1 Y N N N N N -21.269 -13.126 6.530 4.428 0.806 0.895 C30 XNT 22 XNT C32 C23 C 0 1 Y N N N N N -21.815 -13.040 7.812 3.063 0.679 0.727 C32 XNT 23 XNT C33 C24 C 0 1 Y N N N N N -22.181 -12.857 11.024 0.079 1.236 -0.603 C33 XNT 24 XNT C34 C25 C 0 1 Y N N N N N -21.838 -14.213 11.064 0.147 2.604 -0.328 C34 XNT 25 XNT C35 C26 C 0 1 Y N N N N N -22.070 -14.933 12.229 -0.997 3.349 -0.306 C35 XNT 26 XNT C36 C27 C 0 1 Y N N N N N -22.639 -14.332 13.360 -2.229 2.757 -0.554 C36 XNT 27 XNT N10 N1 N 0 1 N N N N N N -30.268 -11.976 17.088 -10.596 -2.460 2.504 N10 XNT 28 XNT N15 N2 N 0 1 Y N N N N N -22.952 -10.961 11.859 -0.947 -0.706 -1.094 N15 XNT 29 XNT O03 O1 O 0 1 N N N N N N -24.451 -12.965 15.396 -4.687 1.563 -0.480 O03 XNT 30 XNT O18 O2 O 0 1 N N N N N N -23.186 -9.436 8.741 2.210 -2.447 -1.095 O18 XNT 31 XNT O19 O3 O 0 1 N N N N N N -22.594 -8.343 10.552 0.228 -3.373 -1.490 O19 XNT 32 XNT O28 O4 O 0 1 N N N N N N -22.211 -12.062 3.426 6.957 -1.209 1.801 O28 XNT 33 XNT O29 O5 O 0 1 N N N N N N -20.331 -11.595 2.047 7.312 -1.792 -0.554 O29 XNT 34 XNT S26 S1 S 0 1 N N N N N N -20.876 -11.487 3.380 7.469 -0.873 0.518 S26 XNT 35 XNT CL31 CL1 CL 0 0 N N N N N N -21.766 -14.554 5.622 5.073 1.251 2.444 CL31 XNT 36 XNT H011 H1 H 0 0 N N N N N N -22.757 -11.208 16.289 -4.875 0.281 -2.809 H011 XNT 37 XNT H013 H2 H 0 0 N N N N N N -21.795 -12.613 15.717 -3.886 1.746 -3.015 H013 XNT 38 XNT H012 H3 H 0 0 N N N N N N -21.774 -11.074 14.792 -3.122 0.140 -3.084 H012 XNT 39 XNT H021 H4 H 0 0 N N N N N N -24.128 -11.344 14.187 -3.680 -0.228 -0.696 H021 XNT 40 XNT H051 H5 H 0 0 N N N N N N -25.970 -11.234 13.827 -5.262 -0.916 -1.098 H051 XNT 41 XNT H061 H6 H 0 0 N N N N N N -28.458 -11.359 13.603 -7.362 -2.070 -0.534 H061 XNT 42 XNT H082 H7 H 0 0 N N N N N N -30.550 -12.396 14.238 -10.302 -0.362 0.848 H082 XNT 43 XNT H081 H8 H 0 0 N N N N N N -30.380 -14.172 14.450 -9.705 -1.834 0.045 H081 XNT 44 XNT H092 H9 H 0 0 N N N N N N -31.858 -12.949 16.141 -8.530 -2.493 2.127 H092 XNT 45 XNT H091 H10 H 0 0 N N N N N N -30.583 -14.024 16.808 -9.127 -1.021 2.930 H091 XNT 46 XNT H111 H11 H 0 0 N N N N N N -28.492 -14.698 16.256 -8.792 1.457 1.391 H111 XNT 47 XNT H121 H12 H 0 0 N N N N N N -26.069 -14.588 16.485 -6.691 2.615 0.838 H121 XNT 48 XNT H221 H13 H 0 0 N N N N N N -20.338 -10.185 8.768 3.021 -0.183 -2.555 H221 XNT 49 XNT H231 H14 H 0 0 N N N N N N -19.390 -10.339 6.503 5.448 0.058 -2.237 H231 XNT 50 XNT H252 H15 H 0 0 N N N N N N -19.640 -13.322 4.368 7.228 1.043 -0.919 H252 XNT 51 XNT H251 H16 H 0 0 N N N N N N -18.812 -11.749 4.621 6.971 1.466 0.791 H251 XNT 52 XNT H271 H17 H 0 0 N N N N N N -21.453 -9.635 4.774 9.616 -0.122 -0.271 H271 XNT 53 XNT H273 H18 H 0 0 N N N N N N -20.051 -9.271 3.713 9.359 0.301 1.439 H273 XNT 54 XNT H272 H19 H 0 0 N N N N N N -21.714 -9.277 3.034 9.778 -1.369 0.989 H272 XNT 55 XNT H321 H20 H 0 0 N N N N N N -22.480 -13.811 8.172 2.397 0.852 1.560 H321 XNT 56 XNT H341 H21 H 0 0 N N N N N N -21.399 -14.693 10.202 1.101 3.070 -0.134 H341 XNT 57 XNT H351 H22 H 0 0 N N N N N N -21.806 -15.980 12.264 -0.944 4.407 -0.094 H351 XNT 58 XNT H361 H23 H 0 0 N N N N N N -22.803 -14.917 14.253 -3.125 3.361 -0.537 H361 XNT 59 XNT H102 H24 H 0 0 N N N N N N -30.731 -11.976 17.974 -10.853 -3.115 1.780 H102 XNT 60 XNT H101 H26 H 0 0 N N N N N N -29.284 -12.087 17.227 -10.526 -2.920 3.399 H101 XNT 61 XNT H151 H27 H 0 0 N N N N N N -23.339 -10.284 12.484 -1.640 -1.355 -1.295 H151 XNT 62 XNT H2 H28 H 0 1 N N N N N N -22.847 -7.607 10.007 0.718 -4.200 -1.599 H2 XNT 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XNT O29 S26 DOUB N N 1 XNT S26 O28 DOUB N N 2 XNT S26 C27 SING N N 3 XNT S26 C25 SING N N 4 XNT C25 C24 SING N N 5 XNT CL31 C30 SING N N 6 XNT C24 C30 DOUB Y N 7 XNT C24 C23 SING Y N 8 XNT C30 C32 SING Y N 9 XNT C23 C22 DOUB Y N 10 XNT C32 C21 DOUB Y N 11 XNT C22 C21 SING Y N 12 XNT C21 C20 SING N N 13 XNT O18 C17 DOUB N N 14 XNT C17 O19 SING N N 15 XNT C17 C16 SING N N 16 XNT C20 C16 DOUB Y N 17 XNT C20 C33 SING Y N 18 XNT C16 N15 SING Y N 19 XNT C33 C34 DOUB Y N 20 XNT C33 C14 SING Y N 21 XNT C34 C35 SING Y N 22 XNT N15 C14 SING Y N 23 XNT C14 C13 DOUB Y N 24 XNT C35 C36 DOUB Y N 25 XNT C13 C36 SING Y N 26 XNT C13 C02 SING N N 27 XNT C06 C05 DOUB Y N 28 XNT C06 C07 SING Y N 29 XNT C05 C04 SING Y N 30 XNT C02 O03 SING N N 31 XNT C02 C01 SING N N 32 XNT C08 C07 SING N N 33 XNT C08 C09 SING N N 34 XNT C07 C11 DOUB Y N 35 XNT C04 O03 SING N N 36 XNT C04 C12 DOUB Y N 37 XNT C11 C12 SING Y N 38 XNT C09 N10 SING N N 39 XNT C01 H011 SING N N 40 XNT C01 H013 SING N N 41 XNT C01 H012 SING N N 42 XNT C02 H021 SING N N 43 XNT C05 H051 SING N N 44 XNT C06 H061 SING N N 45 XNT C08 H082 SING N N 46 XNT C08 H081 SING N N 47 XNT C09 H092 SING N N 48 XNT C09 H091 SING N N 49 XNT C11 H111 SING N N 50 XNT C12 H121 SING N N 51 XNT C22 H221 SING N N 52 XNT C23 H231 SING N N 53 XNT C25 H252 SING N N 54 XNT C25 H251 SING N N 55 XNT C27 H271 SING N N 56 XNT C27 H273 SING N N 57 XNT C27 H272 SING N N 58 XNT C32 H321 SING N N 59 XNT C34 H341 SING N N 60 XNT C35 H351 SING N N 61 XNT C36 H361 SING N N 62 XNT N10 H102 SING N N 63 XNT N10 H101 SING N N 64 XNT N15 H151 SING N N 65 XNT O19 H2 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XNT InChI InChI 1.06 "InChI=1S/C27H27ClN2O5S/c1-16(35-20-10-6-17(7-11-20)12-13-29)21-4-3-5-22-24(26(27(31)32)30-25(21)22)18-8-9-19(23(28)14-18)15-36(2,33)34/h3-11,14,16,30H,12-13,15,29H2,1-2H3,(H,31,32)/t16-/m0/s1" XNT InChIKey InChI 1.06 YNXHCVHXBOQWOI-INIZCTEOSA-N XNT SMILES_CANONICAL CACTVS 3.385 "C[C@H](Oc1ccc(CCN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4" XNT SMILES CACTVS 3.385 "C[CH](Oc1ccc(CCN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4" XNT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)Oc4ccc(cc4)CCN" XNT SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)Oc4ccc(cc4)CCN" # _pdbx_chem_comp_identifier.comp_id XNT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[4-(2-azanylethyl)phenoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XNT "Create component" 2023-06-08 PDBE XNT "Initial release" 2024-06-26 RCSB #