data_XO0 # _chem_comp.id XO0 _chem_comp.name "7-[(1~{S})-1-[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H32 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-06-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 644.673 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XO0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PAA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XO0 C10 C1 C 0 1 N N N N N N -30.539 -14.514 16.113 7.456 1.008 -2.186 C10 XO0 1 XO0 C12 C2 C 0 1 N N N N N N -31.498 -15.615 14.010 9.356 0.140 -0.836 C12 XO0 2 XO0 C15 C3 C 0 1 Y N N N N N -33.472 -14.457 13.496 9.618 1.815 0.725 C15 XO0 3 XO0 C16 C4 C 0 1 Y N N N N N -34.631 -14.096 12.827 10.158 2.484 1.811 C16 XO0 4 XO0 C22 C5 C 0 1 Y N N N N N -29.233 -12.948 14.605 5.183 1.068 -1.141 C22 XO0 5 XO0 C20 C6 C 0 1 N N N N N N -32.665 -13.987 14.755 8.519 2.100 -0.221 C20 XO0 6 XO0 C19 C7 C 0 1 Y N N N N N -33.073 -16.244 11.858 11.210 0.021 1.038 C19 XO0 7 XO0 C14 C8 C 0 1 Y N N N N N -32.685 -15.553 12.990 10.150 0.569 0.334 C14 XO0 8 XO0 C24 C9 C 0 1 Y N N N N N -22.652 -12.878 13.318 -0.690 -0.734 0.579 C24 XO0 9 XO0 C08 C10 C 0 1 Y N N N N N -27.993 -14.296 16.142 6.088 -1.053 -1.807 C08 XO0 10 XO0 C06 C11 C 0 1 Y N N N N N -26.835 -12.781 14.670 3.916 -0.942 -0.788 C06 XO0 11 XO0 C04 C12 C 0 1 N N N N N N -25.510 -12.193 14.202 2.691 -1.615 -0.309 C04 XO0 12 XO0 C27 C13 C 0 1 Y N N N N N -22.397 -10.768 10.446 -3.770 -2.628 0.244 C27 XO0 13 XO0 C02 C14 C 0 1 N N S N N N -23.159 -12.107 14.539 0.524 -1.620 0.692 C02 XO0 14 XO0 C01 C15 C 0 1 N N N N N N -22.265 -12.276 15.766 0.713 -2.044 2.150 C01 XO0 15 XO0 C07 C16 C 0 1 Y N N N N N -26.809 -13.739 15.673 4.948 -1.688 -1.362 C07 XO0 16 XO0 C09 C17 C 0 1 Y N N N N N -29.213 -13.910 15.604 6.207 0.321 -1.697 C09 XO0 17 XO0 C17 C18 C 0 1 Y N N N N N -35.027 -14.794 11.675 11.219 1.923 2.506 C17 XO0 18 XO0 C18 C19 C 0 1 Y N N N N N -34.245 -15.876 11.188 11.741 0.702 2.123 C18 XO0 19 XO0 C23 C20 C 0 1 Y N N N N N -28.053 -12.382 14.142 4.039 0.445 -0.687 C23 XO0 20 XO0 C25 C21 C 0 1 Y N N N N N -22.478 -12.216 12.083 -1.956 -1.299 0.445 C25 XO0 21 XO0 C28 C22 C 0 1 N N N N N N -22.600 -9.463 9.712 -4.590 -3.839 0.143 C28 XO0 22 XO0 C31 C23 C 0 1 Y N N N N N -21.946 -11.979 9.921 -4.248 -1.330 0.217 C31 XO0 23 XO0 C32 C24 C 0 1 Y N N N N N -21.494 -12.243 8.496 -5.660 -0.908 0.084 C32 XO0 24 XO0 C33 C25 C 0 1 Y N N N N N -20.768 -11.280 7.798 -6.590 -1.211 1.084 C33 XO0 25 XO0 C34 C26 C 0 1 Y N N N N N -20.401 -11.575 6.491 -7.898 -0.793 0.911 C34 XO0 26 XO0 C35 C27 C 0 1 Y N N N N N -20.740 -12.790 5.939 -8.241 -0.097 -0.233 C35 XO0 27 XO0 C36 C28 C 0 1 N N N N N N -20.313 -13.079 4.492 -9.664 0.360 -0.425 C36 XO0 28 XO0 C38 C29 C 0 1 N N N N N N -18.343 -13.740 3.310 -11.214 2.148 0.093 C38 XO0 29 XO0 C39 C30 C 0 1 N N N N N N -17.244 -14.790 3.126 -11.314 3.574 0.640 C39 XO0 30 XO0 C41 C31 C 0 1 N N N N N N -18.429 -16.313 4.442 -9.150 4.087 -0.250 C41 XO0 31 XO0 C42 C32 C 0 1 N N N N N N -19.601 -15.339 4.537 -9.029 2.666 -0.806 C42 XO0 32 XO0 C44 C33 C 0 1 Y N N N N N -21.809 -13.441 7.883 -6.085 -0.196 -1.039 C44 XO0 33 XO0 C45 C34 C 0 1 Y N N N N N -22.006 -12.903 10.984 -3.078 -0.454 0.347 C45 XO0 34 XO0 C46 C35 C 0 1 Y N N N N N -21.685 -14.262 11.084 -2.912 0.933 0.386 C46 XO0 35 XO0 C47 C36 C 0 1 Y N N N N N -21.849 -14.913 12.294 -1.661 1.463 0.519 C47 XO0 36 XO0 C48 C37 C 0 1 Y N N N N N -22.329 -14.227 13.409 -0.550 0.635 0.615 C48 XO0 37 XO0 N11 N1 N 0 1 N N N N N N -31.509 -14.685 15.032 8.431 1.082 -1.095 N11 XO0 38 XO0 N26 N2 N 0 1 Y N N N N N -22.703 -10.931 11.735 -2.398 -2.599 0.380 N26 XO0 39 XO0 N37 N3 N 0 1 N N N N N N -19.163 -13.989 4.454 -9.801 1.746 0.042 N37 XO0 40 XO0 N43 N4 N 0 1 Y N N N N N -21.435 -13.679 6.629 -7.342 0.175 -1.160 N43 XO0 41 XO0 O03 O1 O 0 1 N N N N N N -24.423 -12.590 14.949 1.698 -0.892 0.243 O03 XO0 42 XO0 O05 O2 O 0 1 N N N N N N -25.387 -11.441 13.272 2.580 -2.820 -0.413 O05 XO0 43 XO0 O13 O3 O 0 1 N N N N N N -30.641 -16.413 13.905 9.516 -0.888 -1.463 O13 XO0 44 XO0 O21 O4 O 0 1 N N N N N N -33.029 -13.084 15.434 7.814 3.089 -0.211 O21 XO0 45 XO0 O29 O5 O 0 1 N N N N N N -23.039 -9.515 8.518 -5.797 -3.748 0.026 O29 XO0 46 XO0 O30 O6 O 0 1 N N N N N N -22.445 -8.338 10.295 -4.006 -5.054 0.182 O30 XO0 47 XO0 O40 O7 O 0 1 N N N N N N -17.742 -16.124 3.212 -10.532 4.449 -0.178 O40 XO0 48 XO0 H101 H1 H 0 0 N N N N N N -30.967 -13.843 16.873 7.881 0.442 -3.016 H101 XO0 49 XO0 H102 H2 H 0 0 N N N N N N -30.333 -15.496 16.565 7.209 2.015 -2.522 H102 XO0 50 XO0 H161 H3 H 0 0 N N N N N N -35.231 -13.276 13.193 9.755 3.439 2.115 H161 XO0 51 XO0 H221 H4 H 0 0 N N N N N N -30.177 -12.636 14.183 5.282 2.140 -1.059 H221 XO0 52 XO0 H191 H5 H 0 0 N N N N N N -32.474 -17.065 11.492 11.621 -0.933 0.743 H191 XO0 53 XO0 H081 H6 H 0 0 N N N N N N -27.964 -15.034 16.930 6.891 -1.630 -2.243 H081 XO0 54 XO0 H021 H7 H 0 0 N N N N N N -23.219 -11.038 14.286 0.387 -2.506 0.071 H021 XO0 55 XO0 H013 H8 H 0 0 N N N N N N -22.681 -11.700 16.606 0.851 -1.158 2.770 H013 XO0 56 XO0 H011 H9 H 0 0 N N N N N N -22.216 -13.340 16.040 -0.168 -2.590 2.487 H011 XO0 57 XO0 H012 H10 H 0 0 N N N N N N -21.254 -11.909 15.536 1.591 -2.684 2.231 H012 XO0 58 XO0 H071 H11 H 0 0 N N N N N N -25.864 -14.054 16.091 4.853 -2.760 -1.456 H071 XO0 59 XO0 H171 H12 H 0 0 N N N N N N -35.930 -14.507 11.157 11.641 2.445 3.353 H171 XO0 60 XO0 H181 H13 H 0 0 N N N N N N -34.554 -16.413 10.303 12.566 0.275 2.672 H181 XO0 61 XO0 H231 H14 H 0 0 N N N N N N -28.084 -11.629 13.368 3.241 1.029 -0.252 H231 XO0 62 XO0 H331 H15 H 0 0 N N N N N N -20.501 -10.339 8.256 -6.295 -1.757 1.968 H331 XO0 63 XO0 H341 H16 H 0 0 N N N N N N -19.850 -10.852 5.908 -8.644 -1.009 1.662 H341 XO0 64 XO0 H362 H17 H 0 0 N N N N N N -20.039 -12.133 4.002 -9.924 0.305 -1.482 H362 XO0 65 XO0 H361 H18 H 0 0 N N N N N N -21.154 -13.540 3.954 -10.333 -0.284 0.147 H361 XO0 66 XO0 H381 H19 H 0 0 N N N N N N -17.870 -12.753 3.425 -11.762 1.469 0.747 H381 XO0 67 XO0 H382 H20 H 0 0 N N N N N N -18.981 -13.739 2.414 -11.640 2.111 -0.910 H382 XO0 68 XO0 H391 H21 H 0 0 N N N N N N -16.484 -14.646 3.908 -12.355 3.897 0.626 H391 XO0 69 XO0 H392 H22 H 0 0 N N N N N N -16.783 -14.649 2.137 -10.938 3.599 1.663 H392 XO0 70 XO0 H412 H23 H 0 0 N N N N N N -18.807 -17.345 4.494 -8.711 4.127 0.747 H412 XO0 71 XO0 H411 H24 H 0 0 N N N N N N -17.737 -16.133 5.278 -8.626 4.781 -0.907 H411 XO0 72 XO0 H421 H25 H 0 0 N N N N N N -20.300 -15.539 3.712 -9.419 2.638 -1.823 H421 XO0 73 XO0 H422 H26 H 0 0 N N N N N N -20.115 -15.490 5.498 -7.981 2.365 -0.810 H422 XO0 74 XO0 H441 H27 H 0 0 N N N N N N -22.364 -14.191 8.427 -5.377 0.048 -1.817 H441 XO0 75 XO0 H461 H28 H 0 0 N N N N N N -21.312 -14.798 10.224 -3.771 1.583 0.311 H461 XO0 76 XO0 H471 H29 H 0 0 N N N N N N -21.603 -15.961 12.375 -1.534 2.536 0.549 H471 XO0 77 XO0 H481 H30 H 0 0 N N N N N N -22.450 -14.746 14.348 0.433 1.070 0.724 H481 XO0 78 XO0 H261 H31 H 0 0 N N N N N N -23.044 -10.216 12.345 -1.827 -3.382 0.425 H261 XO0 79 XO0 H2 H33 H 0 1 N N N N N N -22.701 -7.638 9.706 -4.627 -5.792 0.108 H2 XO0 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XO0 C39 O40 SING N N 1 XO0 C39 C38 SING N N 2 XO0 O40 C41 SING N N 3 XO0 C38 N37 SING N N 4 XO0 C41 C42 SING N N 5 XO0 N37 C36 SING N N 6 XO0 N37 C42 SING N N 7 XO0 C36 C35 SING N N 8 XO0 C35 C34 DOUB Y N 9 XO0 C35 N43 SING Y N 10 XO0 C34 C33 SING Y N 11 XO0 N43 C44 DOUB Y N 12 XO0 C33 C32 DOUB Y N 13 XO0 C44 C32 SING Y N 14 XO0 C32 C31 SING N N 15 XO0 O29 C28 DOUB N N 16 XO0 C28 O30 SING N N 17 XO0 C28 C27 SING N N 18 XO0 C31 C27 DOUB Y N 19 XO0 C31 C45 SING Y N 20 XO0 C27 N26 SING Y N 21 XO0 C45 C46 DOUB Y N 22 XO0 C45 C25 SING Y N 23 XO0 C46 C47 SING Y N 24 XO0 C18 C17 DOUB Y N 25 XO0 C18 C19 SING Y N 26 XO0 C17 C16 SING Y N 27 XO0 N26 C25 SING Y N 28 XO0 C19 C14 DOUB Y N 29 XO0 C25 C24 DOUB Y N 30 XO0 C47 C48 DOUB Y N 31 XO0 C16 C15 DOUB Y N 32 XO0 C14 C15 SING Y N 33 XO0 C14 C12 SING N N 34 XO0 O05 C04 DOUB N N 35 XO0 C24 C48 SING Y N 36 XO0 C24 C02 SING N N 37 XO0 C15 C20 SING N N 38 XO0 O13 C12 DOUB N N 39 XO0 C12 N11 SING N N 40 XO0 C23 C22 DOUB Y N 41 XO0 C23 C06 SING Y N 42 XO0 C04 C06 SING N N 43 XO0 C04 O03 SING N N 44 XO0 C02 O03 SING N N 45 XO0 C02 C01 SING N N 46 XO0 C22 C09 SING Y N 47 XO0 C06 C07 DOUB Y N 48 XO0 C20 N11 SING N N 49 XO0 C20 O21 DOUB N N 50 XO0 N11 C10 SING N N 51 XO0 C09 C10 SING N N 52 XO0 C09 C08 DOUB Y N 53 XO0 C07 C08 SING Y N 54 XO0 C10 H101 SING N N 55 XO0 C10 H102 SING N N 56 XO0 C16 H161 SING N N 57 XO0 C22 H221 SING N N 58 XO0 C19 H191 SING N N 59 XO0 C08 H081 SING N N 60 XO0 C02 H021 SING N N 61 XO0 C01 H013 SING N N 62 XO0 C01 H011 SING N N 63 XO0 C01 H012 SING N N 64 XO0 C07 H071 SING N N 65 XO0 C17 H171 SING N N 66 XO0 C18 H181 SING N N 67 XO0 C23 H231 SING N N 68 XO0 C33 H331 SING N N 69 XO0 C34 H341 SING N N 70 XO0 C36 H362 SING N N 71 XO0 C36 H361 SING N N 72 XO0 C38 H381 SING N N 73 XO0 C38 H382 SING N N 74 XO0 C39 H391 SING N N 75 XO0 C39 H392 SING N N 76 XO0 C41 H412 SING N N 77 XO0 C41 H411 SING N N 78 XO0 C42 H421 SING N N 79 XO0 C42 H422 SING N N 80 XO0 C44 H441 SING N N 81 XO0 C46 H461 SING N N 82 XO0 C47 H471 SING N N 83 XO0 C48 H481 SING N N 84 XO0 N26 H261 SING N N 85 XO0 O30 H2 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XO0 InChI InChI 1.06 "InChI=1S/C37H32N4O7/c1-22(48-37(46)24-11-9-23(10-12-24)20-41-34(42)28-5-2-3-6-29(28)35(41)43)27-7-4-8-30-31(33(36(44)45)39-32(27)30)25-13-14-26(38-19-25)21-40-15-17-47-18-16-40/h2-14,19,22,39H,15-18,20-21H2,1H3,(H,44,45)/t22-/m0/s1" XO0 InChIKey InChI 1.06 ZFOWOVVBLHBZQZ-QFIPXVFZSA-N XO0 SMILES_CANONICAL CACTVS 3.385 "C[C@H](OC(=O)c1ccc(CN2C(=O)c3ccccc3C2=O)cc1)c4cccc5c4[nH]c(C(O)=O)c5c6ccc(CN7CCOCC7)nc6" XO0 SMILES CACTVS 3.385 "C[CH](OC(=O)c1ccc(CN2C(=O)c3ccccc3C2=O)cc1)c4cccc5c4[nH]c(C(O)=O)c5c6ccc(CN7CCOCC7)nc6" XO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN6C(=O)c7ccccc7C6=O" XO0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN6C(=O)c7ccccc7C6=O" # _pdbx_chem_comp_identifier.comp_id XO0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[4-[[1,3-bis(oxidanylidene)isoindol-2-yl]methyl]phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XO0 "Create component" 2023-06-08 PDBE XO0 "Initial release" 2024-06-26 RCSB #