data_XOI
#
_chem_comp.id XOI
_chem_comp.name "1-[(5M,8aS,13R)-5-[6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl]-6-chloro-2-{[(2S,4R)-4-fluoro-1-methylpyrrolidin-2-yl]methoxy}-8a,9,11,12-tetrahydropyrazino[2',1':3,4][1,4]oxazepino[5,6,7-de]quinazolin-10(8H)-yl]prop-2-en-1-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H30 Cl F4 N7 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-11-06
_chem_comp.pdbx_modified_date 2023-12-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 636.040
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XOI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8UN3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XOI N1 N1 N 0 1 N N N N N N 3.046 30.649 -12.647 -3.975 -4.224 -0.117 N1 XOI 1
XOI C7 C1 C 0 1 Y N N N N N 8.244 24.709 -13.020 2.660 -0.512 -0.386 C7 XOI 2
XOI C8 C2 C 0 1 Y N N N N N 7.047 24.041 -12.997 1.852 0.606 -0.525 C8 XOI 3
XOI N2 N2 N 0 1 N N N N N N 4.151 28.128 -13.120 -2.069 -2.212 -0.480 N2 XOI 4
XOI C9 C3 C 0 1 Y N N N N N 5.803 24.715 -12.982 0.465 0.470 -0.428 C9 XOI 5
XOI O1 O1 O 0 1 N N N N N N 2.411 23.900 -13.098 -2.479 2.428 -0.503 O1 XOI 6
XOI C1 C4 C 0 1 Y N N N N N 11.314 22.610 -12.121 6.225 0.558 0.111 C1 XOI 7
XOI C5 C5 C 0 1 Y N N N N N 10.167 23.418 -11.937 4.854 0.445 0.285 C5 XOI 8
XOI C6 C6 C 0 1 N N N N N N 9.716 23.700 -10.519 4.160 1.211 1.382 C6 XOI 9
XOI N3 N3 N 0 1 Y N N N N N 3.386 25.960 -13.039 -2.231 0.134 -0.455 N3 XOI 10
XOI C4 C7 C 0 1 Y N N N N N 9.528 23.955 -13.085 4.127 -0.384 -0.564 C4 XOI 11
XOI C3 C8 C 0 1 Y N N N N N 11.091 23.014 -14.515 6.038 -0.965 -1.730 C3 XOI 12
XOI C2 C9 C 0 1 Y N N N N N 11.765 22.429 -13.429 6.824 -0.157 -0.912 C2 XOI 13
XOI N4 N4 N 0 1 Y N N N N N 4.662 23.955 -12.995 -0.367 1.522 -0.484 N4 XOI 14
XOI N N5 N 0 1 Y N N N N N 9.981 23.766 -14.336 4.734 -1.061 -1.531 N XOI 15
XOI C C10 C 0 1 N N N N N N 12.081 21.943 -10.984 7.045 1.446 1.011 C XOI 16
XOI O O2 O 0 1 N N N N N N 7.165 28.168 -12.902 0.225 -3.070 0.521 O XOI 17
XOI C10 C11 C 0 1 Y N N N N N 5.773 26.143 -12.981 -0.092 -0.820 -0.242 C10 XOI 18
XOI C11 C12 C 0 1 Y N N N N N 7.036 26.805 -12.976 0.739 -1.907 0.048 C11 XOI 19
XOI C12 C13 C 0 1 Y N N N N N 8.218 26.105 -13.000 2.106 -1.763 -0.079 C12 XOI 20
XOI C13 C14 C 0 1 N N N N N N 6.246 28.881 -12.067 -0.809 -2.952 1.503 C13 XOI 21
XOI C14 C15 C 0 1 N N S N N N 5.045 29.245 -12.843 -2.180 -2.862 0.833 C14 XOI 22
XOI C15 C16 C 0 1 N N N N N N 4.283 30.234 -11.984 -2.730 -4.284 0.661 C15 XOI 23
XOI C16 C17 C 0 1 N N N N N N 2.226 29.602 -13.272 -3.952 -3.496 -1.396 C16 XOI 24
XOI C17 C18 C 0 1 N N N N N N 3.101 28.605 -14.013 -3.380 -2.099 -1.141 C17 XOI 25
XOI C18 C19 C 0 1 Y N N N N N 4.451 26.750 -13.019 -1.492 -0.962 -0.391 C18 XOI 26
XOI C19 C20 C 0 1 Y N N N N N 3.525 24.641 -13.038 -1.673 1.341 -0.480 C19 XOI 27
XOI C20 C21 C 0 1 N N N N N N 1.142 24.584 -13.129 -1.843 3.707 -0.530 C20 XOI 28
XOI C21 C22 C 0 1 N N S N N N 0.026 23.563 -13.191 -2.907 4.806 -0.554 C21 XOI 29
XOI C22 C23 C 0 1 N N N N N N -0.334 22.985 -11.828 -2.243 6.197 -0.710 C22 XOI 30
XOI C23 C24 C 0 1 N N R N N N -0.100 21.517 -11.916 -3.320 7.129 -0.095 C23 XOI 31
XOI C24 C25 C 0 1 N N N N N N 0.703 21.285 -13.114 -3.899 6.280 1.057 C24 XOI 32
XOI C25 C26 C 0 1 N N N N N N -0.750 22.064 -14.902 -4.848 4.075 0.711 C25 XOI 33
XOI C26 C27 C 0 1 N N N N N N 2.672 31.939 -12.519 -5.100 -4.820 0.324 C26 XOI 34
XOI C27 C28 C 0 1 N N N N N N 1.409 32.360 -13.180 -6.361 -4.649 -0.415 C27 XOI 35
XOI C28 C29 C 0 1 N N N N N N 0.880 33.505 -12.958 -7.492 -5.148 0.076 C28 XOI 36
XOI F F1 F 0 1 N N N N N N 8.902 24.751 -10.400 3.804 2.480 0.911 F XOI 37
XOI F1 F2 F 0 1 N N N N N N 9.057 22.663 -9.982 3.009 0.520 1.776 F1 XOI 38
XOI F2 F3 F 0 1 N N N N N N 10.739 23.970 -9.704 5.021 1.344 2.476 F2 XOI 39
XOI F3 F4 F 0 1 N N N N N N -1.343 20.872 -12.098 -4.310 7.431 -1.037 F3 XOI 40
XOI N5 N6 N 0 1 N N N N N N 0.355 22.388 -14.012 -3.612 4.868 0.745 N5 XOI 41
XOI N6 N7 N 0 1 N N N N N N 11.502 22.841 -15.802 6.633 -1.691 -2.754 N6 XOI 42
XOI O2 O3 O 0 1 N N N N N N 3.344 32.744 -11.883 -5.074 -5.500 1.332 O2 XOI 43
XOI CL CL1 CL 0 0 N N N N N N 9.698 26.988 -12.981 3.145 -3.137 0.142 CL XOI 44
XOI H7 H1 H 0 1 N N N N N N 7.054 22.961 -12.990 2.293 1.576 -0.707 H7 XOI 45
XOI H6 H2 H 0 1 N N N N N N 12.645 21.830 -13.610 7.888 -0.083 -1.079 H6 XOI 46
XOI H4 H3 H 0 1 N N N N N N 12.867 22.623 -10.623 7.325 0.894 1.909 H4 XOI 47
XOI H5 H4 H 0 1 N N N N N N 11.389 21.713 -10.161 7.945 1.765 0.486 H5 XOI 48
XOI H3 H5 H 0 1 N N N N N N 12.540 21.012 -11.348 6.458 2.321 1.291 H3 XOI 49
XOI H8 H6 H 0 1 N N N N N N 5.954 28.244 -11.219 -0.785 -3.825 2.156 H8 XOI 50
XOI H9 H7 H 0 1 N N N N N N 6.728 29.795 -11.690 -0.639 -2.054 2.097 H9 XOI 51
XOI H H8 H 0 1 N N N N N N 5.342 29.733 -13.783 -2.856 -2.287 1.466 H XOI 52
XOI H11 H9 H 0 1 N N N N N N 4.036 29.761 -11.022 -2.934 -4.717 1.641 H11 XOI 53
XOI H10 H10 H 0 1 N N N N N N 4.912 31.119 -11.807 -2.000 -4.897 0.134 H10 XOI 54
XOI H13 H11 H 0 1 N N N N N N 1.527 30.067 -13.983 -3.322 -4.027 -2.110 H13 XOI 55
XOI H12 H12 H 0 1 N N N N N N 1.658 29.074 -12.492 -4.965 -3.414 -1.790 H12 XOI 56
XOI H14 H13 H 0 1 N N N N N N 2.488 27.755 -14.346 -4.062 -1.540 -0.501 H14 XOI 57
XOI H15 H14 H 0 1 N N N N N N 3.556 29.094 -14.887 -3.264 -1.577 -2.091 H15 XOI 58
XOI H16 H15 H 0 1 N N N N N N 1.096 25.233 -14.016 -1.221 3.823 0.357 H16 XOI 59
XOI H17 H16 H 0 1 N N N N N N 1.031 25.195 -12.221 -1.221 3.785 -1.422 H17 XOI 60
XOI H1 H17 H 0 1 N N N N N N -0.868 24.051 -13.606 -3.615 4.631 -1.364 H1 XOI 61
XOI H19 H18 H 0 1 N N N N N N 0.304 23.425 -11.048 -1.312 6.251 -0.145 H19 XOI 62
XOI H18 H19 H 0 1 N N N N N N -1.390 23.188 -11.596 -2.075 6.434 -1.760 H18 XOI 63
XOI H2 H20 H 0 1 N N N N N N 0.420 21.154 -11.017 -2.866 8.042 0.290 H2 XOI 64
XOI H21 H21 H 0 1 N N N N N N 0.448 20.317 -13.571 -3.422 6.556 1.997 H21 XOI 65
XOI H20 H22 H 0 1 N N N N N N 1.776 21.305 -12.872 -4.975 6.436 1.128 H20 XOI 66
XOI H23 H23 H 0 1 N N N N N N -0.488 21.184 -15.508 -4.607 3.034 0.493 H23 XOI 67
XOI H24 H24 H 0 1 N N N N N N -1.648 21.844 -14.306 -5.347 4.137 1.678 H24 XOI 68
XOI H22 H25 H 0 1 N N N N N N -0.950 22.919 -15.565 -5.509 4.464 -0.064 H22 XOI 69
XOI H25 H26 H 0 1 N N N N N N 0.924 31.682 -13.866 -6.368 -4.119 -1.356 H25 XOI 70
XOI H26 H27 H 0 1 N N N N N N -0.039 33.781 -13.454 -7.485 -5.678 1.016 H26 XOI 71
XOI H27 H28 H 0 1 N N N N N N 1.353 34.195 -12.274 -8.418 -5.022 -0.467 H27 XOI 72
XOI H29 H30 H 0 1 N N N N N N 10.880 23.324 -16.419 6.093 -2.265 -3.319 H29 XOI 73
XOI H28 H31 H 0 1 N N N N N N 12.427 23.206 -15.908 7.589 -1.624 -2.904 H28 XOI 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XOI N6 C3 SING N N 1
XOI C25 N5 SING N N 2
XOI C3 N DOUB Y N 3
XOI C3 C2 SING Y N 4
XOI N C4 SING Y N 5
XOI C17 C16 SING N N 6
XOI C17 N2 SING N N 7
XOI N5 C21 SING N N 8
XOI N5 C24 SING N N 9
XOI C2 C1 DOUB Y N 10
XOI C16 N1 SING N N 11
XOI C21 C20 SING N N 12
XOI C21 C22 SING N N 13
XOI C27 C28 DOUB N N 14
XOI C27 C26 SING N N 15
XOI C20 O1 SING N N 16
XOI N2 C18 SING N N 17
XOI N2 C14 SING N N 18
XOI C24 C23 SING N N 19
XOI O1 C19 SING N N 20
XOI C4 C7 SING N N 21
XOI C4 C5 DOUB Y N 22
XOI N3 C19 DOUB Y N 23
XOI N3 C18 SING Y N 24
XOI C19 N4 SING Y N 25
XOI C7 C12 SING Y N 26
XOI C7 C8 DOUB Y N 27
XOI C18 C10 DOUB Y N 28
XOI C12 CL SING N N 29
XOI C12 C11 DOUB Y N 30
XOI C8 C9 SING Y N 31
XOI N4 C9 DOUB Y N 32
XOI C9 C10 SING Y N 33
XOI C10 C11 SING Y N 34
XOI C11 O SING N N 35
XOI O C13 SING N N 36
XOI C14 C13 SING N N 37
XOI C14 C15 SING N N 38
XOI N1 C26 SING N N 39
XOI N1 C15 SING N N 40
XOI C26 O2 DOUB N N 41
XOI C1 C5 SING Y N 42
XOI C1 C SING N N 43
XOI F3 C23 SING N N 44
XOI C5 C6 SING N N 45
XOI C23 C22 SING N N 46
XOI C6 F SING N N 47
XOI C6 F1 SING N N 48
XOI C6 F2 SING N N 49
XOI C8 H7 SING N N 50
XOI C2 H6 SING N N 51
XOI C H4 SING N N 52
XOI C H5 SING N N 53
XOI C H3 SING N N 54
XOI C13 H8 SING N N 55
XOI C13 H9 SING N N 56
XOI C14 H SING N N 57
XOI C15 H11 SING N N 58
XOI C15 H10 SING N N 59
XOI C16 H13 SING N N 60
XOI C16 H12 SING N N 61
XOI C17 H14 SING N N 62
XOI C17 H15 SING N N 63
XOI C20 H16 SING N N 64
XOI C20 H17 SING N N 65
XOI C21 H1 SING N N 66
XOI C22 H19 SING N N 67
XOI C22 H18 SING N N 68
XOI C23 H2 SING N N 69
XOI C24 H21 SING N N 70
XOI C24 H20 SING N N 71
XOI C25 H23 SING N N 72
XOI C25 H24 SING N N 73
XOI C25 H22 SING N N 74
XOI C27 H25 SING N N 75
XOI C28 H26 SING N N 76
XOI C28 H27 SING N N 77
XOI N6 H29 SING N N 78
XOI N6 H28 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XOI SMILES ACDLabs 12.01 "FC(F)(F)c1c(C)cc(N)nc1c1cc2nc(OCC3CC(F)CN3C)nc3N4CCN(CC4COc(c32)c1Cl)C(=O)C=C"
XOI InChI InChI 1.06 "InChI=1S/C29H30ClF4N7O3/c1-4-21(42)40-5-6-41-17(11-40)13-43-26-22-19(36-28(38-27(22)41)44-12-16-8-15(31)10-39(16)3)9-18(24(26)30)25-23(29(32,33)34)14(2)7-20(35)37-25/h4,7,9,15-17H,1,5-6,8,10-13H2,2-3H3,(H2,35,37)/t15-,16+,17+/m1/s1"
XOI InChIKey InChI 1.06 PZUIHLNTKXTHSI-IKGGRYGDSA-N
XOI SMILES_CANONICAL CACTVS 3.385 "CN1C[C@H](F)C[C@H]1COc2nc3cc(c(Cl)c4OC[C@@H]5CN(CCN5c(n2)c34)C(=O)C=C)c6nc(N)cc(C)c6C(F)(F)F"
XOI SMILES CACTVS 3.385 "CN1C[CH](F)C[CH]1COc2nc3cc(c(Cl)c4OC[CH]5CN(CCN5c(n2)c34)C(=O)C=C)c6nc(N)cc(C)c6C(F)(F)F"
XOI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1C(F)(F)F)c2cc3c4c(c2Cl)OC[C@@H]5CN(CCN5c4nc(n3)OC[C@@H]6C[C@H](CN6C)F)C(=O)C=C)N"
XOI SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(c1C(F)(F)F)c2cc3c4c(c2Cl)OCC5CN(CCN5c4nc(n3)OCC6CC(CN6C)F)C(=O)C=C)N"
#
_pdbx_chem_comp_identifier.comp_id XOI
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier "1-[(5M,8aS,13R)-5-[6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl]-6-chloro-2-{[(2S,4R)-4-fluoro-1-methylpyrrolidin-2-yl]methoxy}-8a,9,11,12-tetrahydropyrazino[2',1':3,4][1,4]oxazepino[5,6,7-de]quinazolin-10(8H)-yl]prop-2-en-1-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XOI "Create component" 2023-11-06 RCSB
XOI "Initial release" 2023-12-20 RCSB
#