data_XOL # _chem_comp.id XOL _chem_comp.name "(2M)-2-[2-(piperazin-1-yl)phenyl]-N-(1,3-thiazol-2-yl)-1H-benzimidazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 N6 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-03 _chem_comp.pdbx_modified_date 2023-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 404.488 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XOL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FBU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XOL C01 C1 C 0 1 Y N N 9.755 11.761 52.704 1.094 -2.073 0.003 C01 XOL 1 XOL C02 C2 C 0 1 Y N N 10.360 10.630 53.241 1.659 -3.347 0.014 C02 XOL 2 XOL C03 C3 C 0 1 Y N N 11.390 9.991 52.555 0.853 -4.469 0.019 C03 XOL 3 XOL C04 C4 C 0 1 Y N N 11.799 10.467 51.325 -0.524 -4.348 0.014 C04 XOL 4 XOL C06 C5 C 0 1 Y N N 10.197 12.276 51.462 -0.312 -1.938 0.003 C06 XOL 5 XOL C10 C6 C 0 1 Y N N 10.434 14.377 48.508 -3.569 -0.400 -0.006 C10 XOL 6 XOL C11 C7 C 0 1 Y N N 10.460 14.054 47.175 -3.408 0.993 0.004 C11 XOL 7 XOL C13 C8 C 0 1 Y N N 10.308 16.385 46.609 -5.792 1.259 -0.004 C13 XOL 8 XOL C14 C9 C 0 1 Y N N 10.295 16.700 47.947 -5.954 -0.116 -0.020 C14 XOL 9 XOL C17 C10 C 0 1 N N N 9.309 11.844 46.971 -1.887 2.324 -1.211 C17 XOL 10 XOL C18 C11 C 0 1 N N N 9.555 10.350 46.784 -0.450 2.852 -1.198 C18 XOL 11 XOL C21 C12 C 0 1 N N N 11.069 12.307 45.449 -1.930 2.381 1.209 C21 XOL 12 XOL C22 C13 C 0 1 N N N 8.653 12.465 53.475 1.955 -0.878 -0.003 C22 XOL 13 XOL C05 C14 C 0 1 Y N N 11.200 11.621 50.782 -1.114 -3.093 0.003 C05 XOL 14 XOL C08 C15 C 0 1 Y N N 10.536 13.323 49.597 -2.386 -1.284 -0.001 C08 XOL 15 XOL C12 C16 C 0 1 Y N N 10.388 15.049 46.216 -4.528 1.814 0.005 C12 XOL 16 XOL C15 C17 C 0 1 Y N N 10.366 15.703 48.894 -4.853 -0.947 -0.015 C15 XOL 17 XOL C20 C18 C 0 1 N N N 11.389 10.816 45.318 -0.493 2.910 1.221 C20 XOL 18 XOL C24 C19 C 0 1 Y N N 7.193 14.540 53.547 4.107 0.113 -0.003 C24 XOL 19 XOL C26 C20 C 0 1 Y N N 5.863 16.440 53.816 4.593 2.290 -0.007 C26 XOL 20 XOL C27 C21 C 0 1 Y N N 5.547 15.633 54.943 5.853 1.850 -0.010 C27 XOL 21 XOL N07 N1 N 0 1 Y N N 9.801 13.330 50.692 -1.137 -0.877 -0.006 N07 XOL 22 XOL N09 N2 N 0 1 Y N N 11.390 12.305 49.619 -2.424 -2.651 -0.005 N09 XOL 23 XOL N16 N3 N 0 1 N N N 10.538 12.666 46.805 -2.133 1.550 0.014 N16 XOL 24 XOL N19 N4 N 0 1 N N N 10.273 9.993 45.620 -0.247 3.684 -0.004 N19 XOL 25 XOL N23 N5 N 0 1 N N N 8.187 13.714 52.932 3.296 -1.013 0.002 N23 XOL 26 XOL N25 N6 N 0 1 Y N N 6.874 15.770 53.000 3.679 1.337 -0.007 N25 XOL 27 XOL O29 O1 O 0 1 N N N 8.202 12.000 54.470 1.455 0.231 -0.012 O29 XOL 28 XOL S28 S1 S 0 1 Y N N 6.399 14.260 54.951 5.817 0.089 0.002 S28 XOL 29 XOL H021 H1 H 0 0 N N N 10.030 10.245 54.195 2.734 -3.457 0.017 H021 XOL 30 XOL H031 H2 H 0 0 N N N 11.869 9.124 52.985 1.303 -5.450 0.028 H031 XOL 31 XOL H041 H3 H 0 0 N N N 12.578 9.955 50.779 -1.142 -5.233 0.018 H041 XOL 32 XOL H131 H4 H 0 0 N N N 10.257 17.167 45.866 -6.660 1.902 -0.007 H131 XOL 33 XOL H141 H5 H 0 0 N N N 10.229 17.733 48.256 -6.947 -0.541 -0.035 H141 XOL 34 XOL H171 H6 H 0 0 N N N 8.566 12.172 46.229 -2.582 3.162 -1.257 H171 XOL 35 XOL H172 H7 H 0 0 N N N 8.912 12.009 47.984 -2.031 1.684 -2.081 H172 XOL 36 XOL H181 H8 H 0 0 N N N 8.577 9.848 46.747 0.245 2.013 -1.180 H181 XOL 37 XOL H182 H9 H 0 0 N N N 10.120 9.988 47.655 -0.275 3.450 -2.092 H182 XOL 38 XOL H211 H10 H 0 0 N N N 11.989 12.882 45.267 -2.106 1.782 2.102 H211 XOL 39 XOL H212 H11 H 0 0 N N N 10.315 12.573 44.694 -2.626 3.220 1.190 H212 XOL 40 XOL H121 H12 H 0 0 N N N 10.394 14.792 45.167 -4.410 2.887 0.013 H121 XOL 41 XOL H151 H13 H 0 0 N N N 10.369 15.958 49.943 -4.985 -2.019 -0.020 H151 XOL 42 XOL H201 H14 H 0 0 N N N 11.708 10.613 44.285 -0.349 3.550 2.091 H201 XOL 43 XOL H202 H15 H 0 0 N N N 12.208 10.569 46.010 0.203 2.072 1.267 H202 XOL 44 XOL H261 H16 H 0 0 N N N 5.423 17.402 53.596 4.341 3.340 -0.013 H261 XOL 45 XOL H271 H17 H 0 0 N N N 4.826 15.904 55.700 6.740 2.467 -0.019 H271 XOL 46 XOL H09 H19 H 0 1 N N N 12.055 12.080 48.907 -3.220 -3.206 -0.002 H09 XOL 47 XOL H192 H20 H 0 0 N N N 9.643 10.031 44.845 -0.829 4.508 -0.034 H192 XOL 48 XOL H231 H22 H 0 0 N N N 8.584 14.025 52.068 3.694 -1.898 0.010 H231 XOL 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XOL C20 C21 SING N N 1 XOL C20 N19 SING N N 2 XOL C21 N16 SING N N 3 XOL N19 C18 SING N N 4 XOL C12 C13 DOUB Y N 5 XOL C12 C11 SING Y N 6 XOL C13 C14 SING Y N 7 XOL C18 C17 SING N N 8 XOL N16 C17 SING N N 9 XOL N16 C11 SING N N 10 XOL C11 C10 DOUB Y N 11 XOL C14 C15 DOUB Y N 12 XOL C10 C15 SING Y N 13 XOL C10 C08 SING N N 14 XOL C08 N09 SING Y N 15 XOL C08 N07 DOUB Y N 16 XOL N09 C05 SING Y N 17 XOL N07 C06 SING Y N 18 XOL C05 C04 DOUB Y N 19 XOL C05 C06 SING Y N 20 XOL C04 C03 SING Y N 21 XOL C06 C01 DOUB Y N 22 XOL C03 C02 DOUB Y N 23 XOL C01 C02 SING Y N 24 XOL C01 C22 SING N N 25 XOL N23 C22 SING N N 26 XOL N23 C24 SING N N 27 XOL N25 C24 DOUB Y N 28 XOL N25 C26 SING Y N 29 XOL C22 O29 DOUB N N 30 XOL C24 S28 SING Y N 31 XOL C26 C27 DOUB Y N 32 XOL C27 S28 SING Y N 33 XOL C02 H021 SING N N 34 XOL C03 H031 SING N N 35 XOL C04 H041 SING N N 36 XOL C13 H131 SING N N 37 XOL C14 H141 SING N N 38 XOL C17 H171 SING N N 39 XOL C17 H172 SING N N 40 XOL C18 H181 SING N N 41 XOL C18 H182 SING N N 42 XOL C21 H211 SING N N 43 XOL C21 H212 SING N N 44 XOL C12 H121 SING N N 45 XOL C15 H151 SING N N 46 XOL C20 H201 SING N N 47 XOL C20 H202 SING N N 48 XOL C26 H261 SING N N 49 XOL C27 H271 SING N N 50 XOL N09 H09 SING N N 51 XOL N19 H192 SING N N 52 XOL N23 H231 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XOL SMILES ACDLabs 12.01 "O=C(Nc1nccs1)c1cccc2[NH]c(nc12)c1ccccc1N1CCNCC1" XOL InChI InChI 1.06 "InChI=1S/C21H20N6OS/c28-20(26-21-23-10-13-29-21)15-5-3-6-16-18(15)25-19(24-16)14-4-1-2-7-17(14)27-11-8-22-9-12-27/h1-7,10,13,22H,8-9,11-12H2,(H,24,25)(H,23,26,28)" XOL InChIKey InChI 1.06 IXJIKFKXRZPAPB-UHFFFAOYSA-N XOL SMILES_CANONICAL CACTVS 3.385 "O=C(Nc1sccn1)c2cccc3[nH]c(nc23)c4ccccc4N5CCNCC5" XOL SMILES CACTVS 3.385 "O=C(Nc1sccn1)c2cccc3[nH]c(nc23)c4ccccc4N5CCNCC5" XOL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2[nH]c3cccc(c3n2)C(=O)Nc4nccs4)N5CCNCC5" XOL SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2[nH]c3cccc(c3n2)C(=O)Nc4nccs4)N5CCNCC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XOL "SYSTEMATIC NAME" ACDLabs 12.01 "(2M)-2-[2-(piperazin-1-yl)phenyl]-N-(1,3-thiazol-2-yl)-1H-benzimidazole-4-carboxamide" XOL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(2-piperazin-1-ylphenyl)-~{N}-(1,3-thiazol-2-yl)-1~{H}-benzimidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XOL "Create component" 2022-12-03 RCSB XOL "Initial release" 2023-05-31 RCSB #