data_XOY # _chem_comp.id XOY _chem_comp.name "(R)-3-(Benzylthio)-2-(3-(2-((4'-chloro-[1,1'-biphenyl]-2-yl)methyl)-1,2,3,4-tetrahydroisoquinoline-6-carbonyl)-3-(4-methylbenzyl)ureido)propanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C42 H40 Cl N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-24 _chem_comp.pdbx_modified_date 2021-04-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 718.303 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XOY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C82 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XOY C1 C1 C 0 1 Y N N 3.282 -28.438 2.410 -7.610 0.053 0.248 C1 XOY 1 XOY C10 C2 C 0 1 Y N N 5.028 -33.197 1.760 -6.182 4.838 1.265 C10 XOY 2 XOY C11 C3 C 0 1 Y N N 3.730 -32.908 2.159 -6.096 4.202 0.040 C11 XOY 3 XOY C12 C4 C 0 1 Y N N 3.202 -31.625 2.022 -6.233 2.831 -0.040 C12 XOY 4 XOY C13 C5 C 0 1 N N N 1.762 -31.381 2.452 -6.138 2.139 -1.376 C13 XOY 5 XOY C14 C6 C 0 1 N N N -0.558 -31.877 1.882 -4.871 0.434 -2.550 C14 XOY 6 XOY C15 C7 C 0 1 N N N -1.476 -32.789 1.066 -3.673 -0.498 -2.371 C15 XOY 7 XOY C16 C8 C 0 1 Y N N -1.163 -32.688 -0.415 -2.411 0.310 -2.206 C16 XOY 8 XOY C17 C9 C 0 1 Y N N 0.058 -32.193 -0.832 -2.448 1.652 -1.885 C17 XOY 9 XOY C18 C10 C 0 1 N N N 1.116 -31.721 0.145 -3.750 2.386 -1.690 C18 XOY 10 XOY C19 C11 C 0 1 Y N N 0.326 -32.114 -2.193 -1.264 2.362 -1.737 C19 XOY 11 XOY C2 C12 C 0 1 Y N N 2.875 -27.122 2.270 -7.743 -1.319 0.176 C2 XOY 12 XOY C20 C13 C 0 1 Y N N -0.604 -32.526 -3.147 -0.047 1.740 -1.909 C20 XOY 13 XOY C21 C14 C 0 1 Y N N -1.841 -32.992 -2.746 -0.004 0.384 -2.236 C21 XOY 14 XOY C22 C15 C 0 1 Y N N -2.091 -33.113 -1.369 -1.195 -0.326 -2.382 C22 XOY 15 XOY C23 C16 C 0 1 N N N -2.876 -33.513 -3.716 1.295 -0.295 -2.426 C23 XOY 16 XOY C24 C17 C 0 1 N N N -4.728 -32.039 -2.953 1.835 0.200 -0.102 C24 XOY 17 XOY C25 C18 C 0 1 Y N N -5.087 -30.902 -3.919 1.106 -0.776 0.786 C25 XOY 18 XOY C26 C19 C 0 1 Y N N -4.168 -30.416 -4.856 -0.260 -0.943 0.655 C26 XOY 19 XOY C27 C20 C 0 1 Y N N -4.511 -29.376 -5.726 -0.928 -1.842 1.466 C27 XOY 20 XOY C28 C21 C 0 1 Y N N -5.783 -28.808 -5.658 -0.229 -2.573 2.408 C28 XOY 21 XOY C29 C22 C 0 1 N N N -6.170 -27.679 -6.578 -0.957 -3.553 3.292 C29 XOY 22 XOY C3 C23 C 0 1 Y N N 2.755 -26.586 0.990 -6.886 -2.138 0.891 C3 XOY 23 XOY C30 C24 C 0 1 Y N N -6.703 -29.284 -4.727 1.137 -2.407 2.539 C30 XOY 24 XOY C31 C25 C 0 1 Y N N -6.353 -30.322 -3.864 1.804 -1.508 1.729 C31 XOY 25 XOY C32 C26 C 0 1 N N N -4.961 -33.757 -4.583 3.260 -1.174 -1.523 C32 XOY 26 XOY C33 C27 C 0 1 N N R -5.391 -35.339 -6.376 5.323 -2.116 -0.632 C33 XOY 27 XOY C34 C28 C 0 1 N N N -6.036 -36.460 -5.612 5.006 -3.569 -0.391 C34 XOY 28 XOY C35 C29 C 0 1 N N N -4.626 -35.937 -7.553 6.367 -1.646 0.383 C35 XOY 29 XOY C36 C30 C 0 1 N N N -5.689 -33.825 -8.934 7.983 0.469 1.372 C36 XOY 30 XOY C37 C31 C 0 1 Y N N -5.560 -32.535 -9.732 8.408 1.910 1.262 C37 XOY 31 XOY C38 C32 C 0 1 Y N N -5.753 -32.542 -11.108 9.474 2.257 0.453 C38 XOY 32 XOY C39 C33 C 0 1 Y N N -5.645 -31.367 -11.852 9.861 3.579 0.348 C39 XOY 33 XOY C4 C34 C 0 1 Y N N 3.028 -27.357 -0.140 -5.891 -1.586 1.680 C4 XOY 34 XOY C40 C35 C 0 1 Y N N -5.345 -30.171 -11.213 9.182 4.556 1.051 C40 XOY 35 XOY C41 C36 C 0 1 Y N N -5.161 -30.157 -9.831 8.115 4.210 1.860 C41 XOY 36 XOY C42 C37 C 0 1 Y N N -5.268 -31.334 -9.093 7.729 2.887 1.965 C42 XOY 37 XOY C5 C38 C 0 1 Y N N 3.431 -28.682 0.006 -5.750 -0.215 1.758 C5 XOY 38 XOY C6 C39 C 0 1 Y N N 3.547 -29.221 1.290 -6.607 0.613 1.036 C6 XOY 39 XOY C7 C40 C 0 1 Y N N 3.999 -30.625 1.473 -6.459 2.088 1.116 C7 XOY 40 XOY C8 C41 C 0 1 Y N N 5.304 -30.911 1.073 -6.545 2.733 2.348 C8 XOY 41 XOY C9 C42 C 0 1 Y N N 5.821 -32.194 1.210 -6.400 4.104 2.417 C9 XOY 42 XOY N1 N1 N 0 1 N N N 0.859 -32.128 1.540 -4.851 1.438 -1.474 N1 XOY 43 XOY N2 N2 N 0 1 N N N -4.151 -33.104 -3.747 2.138 -0.440 -1.384 N2 XOY 44 XOY N3 N3 N 0 1 N N N -4.496 -34.585 -5.517 4.103 -1.318 -0.481 N3 XOY 45 XOY O1 O1 O 0 1 N N N -2.511 -34.406 -4.471 1.602 -0.723 -3.521 O1 XOY 46 XOY O2 O2 O 0 1 N N N -6.162 -33.670 -4.381 3.512 -1.704 -2.587 O2 XOY 47 XOY O3 O3 O 0 1 N N N -5.360 -37.068 -4.753 5.978 -4.491 -0.476 O3 XOY 48 XOY O4 O4 O 0 1 N N N -7.226 -36.748 -5.858 3.877 -3.905 -0.122 O4 XOY 49 XOY S1 S1 S 0 1 N N N -4.147 -34.665 -8.681 6.749 0.103 0.094 S1 XOY 50 XOY CL3 CL1 CL 0 0 N N N 2.238 -24.885 0.804 -7.060 -3.862 0.798 CL3 XOY 51 XOY H1 H1 H 0 1 N N N 3.395 -28.861 3.397 -8.279 0.691 -0.310 H1 XOY 52 XOY H2 H2 H 0 1 N N N 5.421 -34.196 1.876 -6.074 5.911 1.323 H2 XOY 53 XOY H3 H3 H 0 1 N N N 3.119 -33.691 2.583 -5.921 4.780 -0.856 H3 XOY 54 XOY H4 H4 H 0 1 N N N 1.537 -30.306 2.397 -6.952 1.421 -1.472 H4 XOY 55 XOY H5 H5 H 0 1 N N N 1.619 -31.733 3.484 -6.211 2.879 -2.174 H5 XOY 56 XOY H6 H6 H 0 1 N N N -0.803 -30.827 1.663 -4.807 0.932 -3.517 H6 XOY 57 XOY H7 H7 H 0 1 N N N -0.712 -32.073 2.953 -5.795 -0.142 -2.496 H7 XOY 58 XOY H8 H8 H 0 1 N N N -2.521 -32.491 1.234 -3.825 -1.117 -1.487 H8 XOY 59 XOY H9 H9 H 0 1 N N N -1.334 -33.829 1.394 -3.579 -1.138 -3.249 H9 XOY 60 XOY H10 H10 H 0 1 N N N 2.086 -32.137 -0.165 -3.666 3.043 -0.825 H10 XOY 61 XOY H11 H11 H 0 1 N N N 1.159 -30.623 0.106 -3.961 2.985 -2.576 H11 XOY 62 XOY H12 H12 H 0 1 N N N 1.278 -31.724 -2.520 -1.297 3.412 -1.484 H12 XOY 63 XOY H13 H13 H 0 1 N N N 2.654 -26.521 3.139 -8.518 -1.754 -0.438 H13 XOY 64 XOY H14 H14 H 0 1 N N N -0.358 -32.481 -4.198 0.869 2.299 -1.791 H14 XOY 65 XOY H15 H15 H 0 1 N N N -3.024 -33.545 -1.039 -1.169 -1.376 -2.635 H15 XOY 66 XOY H16 H16 H 0 1 N N N -3.999 -31.686 -2.208 1.207 1.075 -0.271 H16 XOY 67 XOY H17 H17 H 0 1 N N N -5.632 -32.398 -2.440 2.763 0.506 0.380 H17 XOY 68 XOY H18 H18 H 0 1 N N N -3.180 -30.850 -4.908 -0.806 -0.371 -0.081 H18 XOY 69 XOY H19 H19 H 0 1 N N N -3.794 -29.014 -6.448 -1.995 -1.972 1.363 H19 XOY 70 XOY H20 H20 H 0 1 N N N -6.610 -28.090 -7.498 -0.975 -4.531 2.812 H20 XOY 71 XOY H21 H21 H 0 1 N N N -6.906 -27.033 -6.076 -0.444 -3.628 4.251 H21 XOY 72 XOY H22 H22 H 0 1 N N N -5.276 -27.089 -6.831 -1.979 -3.208 3.453 H22 XOY 73 XOY H23 H23 H 0 1 N N N -7.690 -28.848 -4.673 1.682 -2.979 3.275 H23 XOY 74 XOY H24 H24 H 0 1 N N N -7.073 -30.681 -3.143 2.872 -1.380 1.828 H24 XOY 75 XOY H25 H25 H 0 1 N N N -6.176 -34.675 -6.767 5.716 -1.992 -1.641 H25 XOY 76 XOY H26 H26 H 0 1 N N N -5.270 -36.661 -8.074 5.975 -1.770 1.392 H26 XOY 77 XOY H27 H27 H 0 1 N N N -3.727 -36.448 -7.179 7.275 -2.240 0.271 H27 XOY 78 XOY H28 H28 H 0 1 N N N -6.118 -33.583 -7.950 8.850 -0.177 1.235 H28 XOY 79 XOY H29 H29 H 0 1 N N N -6.368 -34.501 -9.474 7.550 0.292 2.356 H29 XOY 80 XOY H30 H30 H 0 1 N N N -5.990 -33.469 -11.608 10.005 1.493 -0.097 H30 XOY 81 XOY H31 H31 H 0 1 N N N -5.794 -31.387 -12.921 10.695 3.850 -0.284 H31 XOY 82 XOY H32 H32 H 0 1 N N N 2.927 -26.927 -1.126 -5.227 -2.229 2.239 H32 XOY 83 XOY H33 H33 H 0 1 N N N -5.255 -29.258 -11.783 9.484 5.590 0.970 H33 XOY 84 XOY H34 H34 H 0 1 N N N -4.934 -29.228 -9.329 7.584 4.973 2.409 H34 XOY 85 XOY H35 H35 H 0 1 N N N -5.124 -31.314 -8.023 6.893 2.617 2.594 H35 XOY 86 XOY H36 H36 H 0 1 N N N 3.651 -29.285 -0.862 -4.973 0.214 2.374 H36 XOY 87 XOY H37 H37 H 0 1 N N N 5.919 -30.129 0.653 -6.716 2.161 3.248 H37 XOY 88 XOY H38 H38 H 0 1 N N N 6.830 -32.411 0.892 -6.467 4.606 3.371 H38 XOY 89 XOY H40 H40 H 0 1 N N N -3.508 -34.690 -5.629 3.902 -0.895 0.368 H40 XOY 90 XOY H41 H41 H 0 1 N N N -5.892 -37.745 -4.352 5.727 -5.411 -0.314 H41 XOY 91 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XOY C39 C40 DOUB Y N 1 XOY C39 C38 SING Y N 2 XOY C40 C41 SING Y N 3 XOY C38 C37 DOUB Y N 4 XOY C41 C42 DOUB Y N 5 XOY C37 C42 SING Y N 6 XOY C37 C36 SING N N 7 XOY C36 S1 SING N N 8 XOY S1 C35 SING N N 9 XOY C35 C33 SING N N 10 XOY C29 C28 SING N N 11 XOY C33 C34 SING N N 12 XOY C33 N3 SING N N 13 XOY O4 C34 DOUB N N 14 XOY C27 C28 DOUB Y N 15 XOY C27 C26 SING Y N 16 XOY C28 C30 SING Y N 17 XOY C34 O3 SING N N 18 XOY N3 C32 SING N N 19 XOY C26 C25 DOUB Y N 20 XOY C30 C31 DOUB Y N 21 XOY C32 O2 DOUB N N 22 XOY C32 N2 SING N N 23 XOY O1 C23 DOUB N N 24 XOY C25 C31 SING Y N 25 XOY C25 C24 SING N N 26 XOY N2 C23 SING N N 27 XOY N2 C24 SING N N 28 XOY C23 C21 SING N N 29 XOY C20 C21 DOUB Y N 30 XOY C20 C19 SING Y N 31 XOY C21 C22 SING Y N 32 XOY C19 C17 DOUB Y N 33 XOY C22 C16 DOUB Y N 34 XOY C17 C16 SING Y N 35 XOY C17 C18 SING N N 36 XOY C16 C15 SING N N 37 XOY C4 C5 DOUB Y N 38 XOY C4 C3 SING Y N 39 XOY C5 C6 SING Y N 40 XOY C18 N1 SING N N 41 XOY CL3 C3 SING N N 42 XOY C3 C2 DOUB Y N 43 XOY C15 C14 SING N N 44 XOY C8 C9 DOUB Y N 45 XOY C8 C7 SING Y N 46 XOY C9 C10 SING Y N 47 XOY C6 C7 SING N N 48 XOY C6 C1 DOUB Y N 49 XOY C7 C12 DOUB Y N 50 XOY N1 C14 SING N N 51 XOY N1 C13 SING N N 52 XOY C10 C11 DOUB Y N 53 XOY C12 C11 SING Y N 54 XOY C12 C13 SING N N 55 XOY C2 C1 SING Y N 56 XOY C1 H1 SING N N 57 XOY C10 H2 SING N N 58 XOY C11 H3 SING N N 59 XOY C13 H4 SING N N 60 XOY C13 H5 SING N N 61 XOY C14 H6 SING N N 62 XOY C14 H7 SING N N 63 XOY C15 H8 SING N N 64 XOY C15 H9 SING N N 65 XOY C18 H10 SING N N 66 XOY C18 H11 SING N N 67 XOY C19 H12 SING N N 68 XOY C2 H13 SING N N 69 XOY C20 H14 SING N N 70 XOY C22 H15 SING N N 71 XOY C24 H16 SING N N 72 XOY C24 H17 SING N N 73 XOY C26 H18 SING N N 74 XOY C27 H19 SING N N 75 XOY C29 H20 SING N N 76 XOY C29 H21 SING N N 77 XOY C29 H22 SING N N 78 XOY C30 H23 SING N N 79 XOY C31 H24 SING N N 80 XOY C33 H25 SING N N 81 XOY C35 H26 SING N N 82 XOY C35 H27 SING N N 83 XOY C36 H28 SING N N 84 XOY C36 H29 SING N N 85 XOY C38 H30 SING N N 86 XOY C39 H31 SING N N 87 XOY C4 H32 SING N N 88 XOY C40 H33 SING N N 89 XOY C41 H34 SING N N 90 XOY C42 H35 SING N N 91 XOY C5 H36 SING N N 92 XOY C8 H37 SING N N 93 XOY C9 H38 SING N N 94 XOY N3 H40 SING N N 95 XOY O3 H41 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XOY SMILES ACDLabs 12.01 "c1cc(ccc1c2c(cccc2)CN3CCc4c(C3)ccc(c4)C(N(Cc5ccc(cc5)C)C(=O)NC(C(O)=O)CSCc6ccccc6)=O)Cl" XOY InChI InChI 1.03 "InChI=1S/C42H40ClN3O4S/c1-29-11-13-30(14-12-29)24-46(42(50)44-39(41(48)49)28-51-27-31-7-3-2-4-8-31)40(47)34-15-16-35-25-45(22-21-33(35)23-34)26-36-9-5-6-10-38(36)32-17-19-37(43)20-18-32/h2-20,23,39H,21-22,24-28H2,1H3,(H,44,50)(H,48,49)/t39-/m0/s1" XOY InChIKey InChI 1.03 OFVMPKFGKDQYKS-KDXMTYKHSA-N XOY SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(CN(C(=O)N[C@@H](CSCc2ccccc2)C(O)=O)C(=O)c3ccc4CN(CCc4c3)Cc5ccccc5c6ccc(Cl)cc6)cc1" XOY SMILES CACTVS 3.385 "Cc1ccc(CN(C(=O)N[CH](CSCc2ccccc2)C(O)=O)C(=O)c3ccc4CN(CCc4c3)Cc5ccccc5c6ccc(Cl)cc6)cc1" XOY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1)CN(C(=O)c2ccc3c(c2)CCN(C3)Cc4ccccc4c5ccc(cc5)Cl)C(=O)N[C@@H](CSCc6ccccc6)C(=O)O" XOY SMILES "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1)CN(C(=O)c2ccc3c(c2)CCN(C3)Cc4ccccc4c5ccc(cc5)Cl)C(=O)NC(CSCc6ccccc6)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XOY "SYSTEMATIC NAME" ACDLabs 12.01 "S-benzyl-N-({2-[(4'-chloro[1,1'-biphenyl]-2-yl)methyl]-1,2,3,4-tetrahydroisoquinoline-6-carbonyl}[(4-methylphenyl)methyl]carbamoyl)-L-cysteine" XOY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-[[[2-[[2-(4-chlorophenyl)phenyl]methyl]-3,4-dihydro-1~{H}-isoquinolin-6-yl]carbonyl-[(4-methylphenyl)methyl]carbamoyl]amino]-3-(phenylmethylsulfanyl)propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XOY "Create component" 2018-01-24 RCSB XOY "Modify name" 2019-11-05 RCSB XOY "Initial release" 2021-05-05 RCSB ##