data_XP3 # _chem_comp.id XP3 _chem_comp.name "(5~{R})-2-(hydroxymethyl)-3-[(~{E})-non-3-enyl]-5-oxidanyl-cyclohex-2-en-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H26 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-07 _chem_comp.pdbx_modified_date 2024-09-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.376 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XP3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X0V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XP3 C10 C1 C 0 1 N N N N N N -5.220 -19.992 -24.651 2.156 0.521 -0.743 C10 XP3 1 XP3 C17 C2 C 0 1 N N R N N N -4.138 -20.469 -26.995 4.422 1.324 -0.065 C17 XP3 2 XP3 C01 C3 C 0 1 N N N N N N -12.068 -20.398 -17.014 -8.245 -0.752 -0.502 C01 XP3 3 XP3 C02 C4 C 0 1 N N N N N N -10.717 -19.814 -17.480 -6.765 -1.058 -0.260 C02 XP3 4 XP3 C03 C5 C 0 1 N N N N N N -9.609 -20.891 -17.568 -6.017 0.244 0.033 C03 XP3 5 XP3 C04 C6 C 0 1 N N N N N N -9.196 -21.168 -19.034 -4.537 -0.061 0.274 C04 XP3 6 XP3 C05 C7 C 0 1 N N N N N N -7.676 -20.986 -19.263 -3.789 1.241 0.567 C05 XP3 7 XP3 C06 C8 C 0 1 N N N N N N -7.126 -21.971 -20.323 -2.332 0.941 0.805 C06 XP3 8 XP3 C07 C9 C 0 1 N N N N N N -6.975 -21.401 -21.525 -1.413 1.549 0.097 C07 XP3 9 XP3 C08 C10 C 0 1 N N N N N N -6.574 -21.454 -23.023 0.045 1.249 0.335 C08 XP3 10 XP3 C09 C11 C 0 1 N N N N N N -6.413 -20.048 -23.661 0.699 0.822 -0.980 C09 XP3 11 XP3 C11 C12 C 0 1 N N N N N N -3.951 -19.246 -24.233 2.506 -0.729 -0.464 C11 XP3 12 XP3 C12 C13 C 0 1 N N N N N N -4.038 -18.350 -22.983 1.451 -1.803 -0.405 C12 XP3 13 XP3 C14 C14 C 0 1 N N N N N N -2.922 -18.900 -25.306 3.909 -1.074 -0.215 C14 XP3 14 XP3 C16 C15 C 0 1 N N N N N N -3.164 -19.300 -26.767 4.960 -0.033 -0.542 C16 XP3 15 XP3 C19 C16 C 0 1 N N N N N N -5.381 -20.527 -26.084 3.142 1.648 -0.838 C19 XP3 16 XP3 O13 O1 O 0 1 N N N N N N -4.185 -17.022 -23.427 1.530 -2.480 0.852 O13 XP3 17 XP3 O15 O2 O 0 1 N N N N N N -1.931 -18.320 -25.000 4.218 -2.156 0.238 O15 XP3 18 XP3 O18 O3 O 0 1 N N N N N N -4.581 -20.425 -28.335 4.141 1.262 1.335 O18 XP3 19 XP3 H171 H1 H 0 0 N N N N N N -3.574 -21.400 -26.837 5.166 2.098 -0.254 H171 XP3 20 XP3 H012 H2 H 0 0 N N N N N N -12.819 -19.595 -16.968 -8.342 -0.078 -1.352 H012 XP3 21 XP3 H011 H3 H 0 0 N N N N N N -12.399 -21.169 -17.725 -8.778 -1.680 -0.710 H011 XP3 22 XP3 H013 H4 H 0 0 N N N N N N -11.949 -20.846 -16.016 -8.668 -0.282 0.386 H013 XP3 23 XP3 H021 H5 H 0 0 N N N N N N -10.851 -19.363 -18.474 -6.667 -1.732 0.591 H021 XP3 24 XP3 H022 H6 H 0 0 N N N N N N -10.401 -19.040 -16.765 -6.341 -1.528 -1.147 H022 XP3 25 XP3 H032 H7 H 0 0 N N N N N N -8.728 -20.543 -17.009 -6.114 0.919 -0.818 H032 XP3 26 XP3 H031 H8 H 0 0 N N N N N N -9.982 -21.824 -17.120 -6.440 0.715 0.920 H031 XP3 27 XP3 H041 H9 H 0 0 N N N N N N -9.470 -22.202 -19.289 -4.439 -0.735 1.125 H041 XP3 28 XP3 H042 H10 H 0 0 N N N N N N -9.738 -20.472 -19.691 -4.114 -0.531 -0.613 H042 XP3 29 XP3 H051 H11 H 0 0 N N N N N N -7.489 -19.957 -19.604 -3.886 1.916 -0.283 H051 XP3 30 XP3 H052 H12 H 0 0 N N N N N N -7.151 -21.158 -18.312 -4.212 1.712 1.454 H052 XP3 31 XP3 H061 H13 H 0 0 N N N N N N -6.890 -23.004 -20.116 -2.044 0.223 1.560 H061 XP3 32 XP3 H071 H14 H 0 0 N N N N N N -7.298 -20.381 -21.375 -1.700 2.267 -0.657 H071 XP3 33 XP3 H082 H15 H 0 0 N N N N N N -5.617 -21.990 -23.110 0.542 2.141 0.716 H082 XP3 34 XP3 H081 H16 H 0 0 N N N N N N -7.352 -22.002 -23.575 0.135 0.443 1.064 H081 XP3 35 XP3 H091 H17 H 0 0 N N N N N N -7.336 -19.796 -24.203 0.608 1.627 -1.709 H091 XP3 36 XP3 H092 H18 H 0 0 N N N N N N -6.245 -19.312 -22.861 0.201 -0.070 -1.361 H092 XP3 37 XP3 H122 H19 H 0 0 N N N N N N -3.119 -18.447 -22.386 0.465 -1.351 -0.512 H122 XP3 38 XP3 H121 H20 H 0 0 N N N N N N -4.905 -18.640 -22.372 1.613 -2.517 -1.212 H121 XP3 39 XP3 H162 H21 H 0 0 N N N N N N -3.564 -18.421 -27.294 5.136 -0.005 -1.617 H162 XP3 40 XP3 H161 H22 H 0 0 N N N N N N -2.194 -19.580 -27.204 5.887 -0.269 -0.019 H161 XP3 41 XP3 H192 H23 H 0 0 N N N N N N -6.176 -19.942 -26.569 3.386 1.821 -1.885 H192 XP3 42 XP3 H191 H24 H 0 0 N N N N N N -5.692 -21.580 -26.013 2.694 2.550 -0.422 H191 XP3 43 XP3 H131 H25 H 0 0 N N N N N N -4.242 -16.441 -22.677 0.879 -3.186 0.960 H131 XP3 44 XP3 H181 H26 H 0 0 N N N N N N -5.184 -21.141 -28.493 4.911 1.053 1.881 H181 XP3 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XP3 C02 C01 SING N N 1 XP3 C03 C02 SING N N 2 XP3 C04 C03 SING N N 3 XP3 C05 C04 SING N N 4 XP3 C06 C05 SING N N 5 XP3 C07 C06 DOUB N E 6 XP3 C08 C07 SING N N 7 XP3 C09 C08 SING N N 8 XP3 C10 C09 SING N N 9 XP3 C11 C10 DOUB N N 10 XP3 O13 C12 SING N N 11 XP3 C12 C11 SING N N 12 XP3 C14 C11 SING N N 13 XP3 O15 C14 DOUB N N 14 XP3 C16 C14 SING N N 15 XP3 C17 C16 SING N N 16 XP3 O18 C17 SING N N 17 XP3 C19 C17 SING N N 18 XP3 C10 C19 SING N N 19 XP3 C17 H171 SING N N 20 XP3 C01 H012 SING N N 21 XP3 C01 H011 SING N N 22 XP3 C01 H013 SING N N 23 XP3 C02 H021 SING N N 24 XP3 C02 H022 SING N N 25 XP3 C03 H032 SING N N 26 XP3 C03 H031 SING N N 27 XP3 C04 H041 SING N N 28 XP3 C04 H042 SING N N 29 XP3 C05 H051 SING N N 30 XP3 C05 H052 SING N N 31 XP3 C06 H061 SING N N 32 XP3 C07 H071 SING N N 33 XP3 C08 H082 SING N N 34 XP3 C08 H081 SING N N 35 XP3 C09 H091 SING N N 36 XP3 C09 H092 SING N N 37 XP3 C12 H122 SING N N 38 XP3 C12 H121 SING N N 39 XP3 C16 H162 SING N N 40 XP3 C16 H161 SING N N 41 XP3 C19 H192 SING N N 42 XP3 C19 H191 SING N N 43 XP3 O13 H131 SING N N 44 XP3 O18 H181 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XP3 InChI InChI 1.06 "InChI=1S/C16H26O3/c1-2-3-4-5-6-7-8-9-13-10-14(18)11-16(19)15(13)12-17/h6-7,14,17-18H,2-5,8-12H2,1H3" XP3 InChIKey InChI 1.06 UIYPBPASYFNZQB-UHFFFAOYSA-N XP3 SMILES_CANONICAL CACTVS 3.385 "CCCCC/C=C/CCC1=C(CO)C(=O)C[C@H](O)C1" XP3 SMILES CACTVS 3.385 "CCCCCC=CCCC1=C(CO)C(=O)C[CH](O)C1" XP3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC/C=C/CCC1=C(C(=O)C[C@@H](C1)O)CO" XP3 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC=CCCC1=C(C(=O)CC(C1)O)CO" # _pdbx_chem_comp_identifier.comp_id XP3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{R})-2-(hydroxymethyl)-3-[(~{E})-non-3-enyl]-5-oxidanyl-cyclohex-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XP3 "Create component" 2023-11-07 PDBC XP3 "Initial release" 2024-09-11 RCSB #