data_XP6 # _chem_comp.id XP6 _chem_comp.name Norbaeocystin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N2 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[3-(2-azanylethyl)-1~{H}-indol-4-yl] dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 256.195 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XP6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PB5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XP6 N N1 N 0 1 N N N N N N 15.969 -2.116 12.332 0.210 4.201 0.836 N XP6 1 XP6 CA C1 C 0 1 N N N N N N 17.301 -1.514 12.098 0.915 2.913 0.892 CA XP6 2 XP6 CB C2 C 0 1 N N N N N N 17.829 -1.756 10.668 0.816 2.217 -0.467 CB XP6 3 XP6 C2 C3 C 0 1 Y N N N N N 20.401 -1.755 10.624 2.903 0.819 -0.877 C2 XP6 4 XP6 C3 C4 C 0 1 Y N N N N N 19.194 -1.123 10.562 1.639 0.955 -0.447 C3 XP6 5 XP6 C4 C5 C 0 1 Y N N N N N 18.761 1.428 10.257 0.024 -0.844 0.607 C4 XP6 6 XP6 C5 C6 C 0 1 Y N N N N N 19.360 2.671 10.082 -0.058 -2.173 0.978 C5 XP6 7 XP6 C6 C7 C 0 1 Y N N N N N 20.737 2.723 10.054 1.026 -3.019 0.795 C6 XP6 8 XP6 C7 C8 C 0 1 Y N N N N N 21.531 1.611 10.178 2.199 -2.552 0.245 C7 XP6 9 XP6 C8 C9 C 0 1 Y N N N N N 20.889 0.386 10.348 2.306 -1.218 -0.136 C8 XP6 10 XP6 C9 C10 C 0 1 Y N N N N N 19.495 0.257 10.384 1.211 -0.356 0.046 C9 XP6 11 XP6 N1 N2 N 0 1 Y N N N N N 21.412 -0.862 10.512 3.317 -0.475 -0.704 N1 XP6 12 XP6 O1 O1 O 0 1 N N N N N N 15.166 1.319 9.277 -3.365 0.878 -0.049 O1 XP6 13 XP6 O2 O2 O 0 1 N N N N N N 16.193 3.436 10.199 -2.853 -1.700 -0.103 O2 XP6 14 XP6 O3 O3 O 0 1 N N N N N N 16.981 2.442 8.054 -1.677 -0.093 -1.655 O3 XP6 15 XP6 O4 O4 O 0 1 N N N N N N 17.383 1.240 10.259 -1.039 -0.017 0.786 O4 XP6 16 XP6 P P1 P 0 1 N N N N N N 16.383 2.163 9.417 -2.221 -0.230 -0.285 P XP6 17 XP6 H3 H1 H 0 1 N N N N N N 15.678 -1.929 13.270 -0.749 4.075 0.548 H3 XP6 18 XP6 HN1 H2 H 0 1 N N N N N N 15.308 -1.722 11.693 0.262 4.680 1.722 HN1 XP6 19 XP6 HA1 H4 H 0 1 N N N N N N 18.014 -1.950 12.813 1.964 3.084 1.137 HA1 XP6 20 XP6 HA2 H5 H 0 1 N N N N N N 17.230 -0.429 12.267 0.461 2.283 1.657 HA2 XP6 21 XP6 HB2 H6 H 0 1 N N N N N N 17.147 -1.298 9.936 -0.225 1.969 -0.673 HB2 XP6 22 XP6 HB1 H7 H 0 1 N N N N N N 17.903 -2.836 10.475 1.191 2.883 -1.244 HB1 XP6 23 XP6 H2 H8 H 0 1 N N N N N N 20.532 -2.820 10.746 3.503 1.611 -1.300 H2 XP6 24 XP6 H5 H9 H 0 1 N N N N N N 18.766 3.566 9.972 -0.971 -2.554 1.411 H5 XP6 25 XP6 H6 H10 H 0 1 N N N N N N 21.213 3.684 9.929 0.950 -4.056 1.089 H6 XP6 26 XP6 H7 H11 H 0 1 N N N N N N 22.608 1.682 10.145 3.036 -3.221 0.109 H7 XP6 27 XP6 H1 H12 H 0 1 N N N N N N 22.387 -1.083 10.544 4.194 -0.815 -0.941 H1 XP6 28 XP6 H4 H13 H 0 1 N N N N N N 15.016 1.129 8.358 -4.111 0.810 -0.661 H4 XP6 29 XP6 H8 H14 H 0 1 N N N N N N 16.488 4.174 9.679 -3.163 -1.886 0.793 H8 XP6 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XP6 O3 P DOUB N N 1 XP6 O1 P SING N N 2 XP6 P O2 SING N N 3 XP6 P O4 SING N N 4 XP6 C6 C5 DOUB Y N 5 XP6 C6 C7 SING Y N 6 XP6 C5 C4 SING Y N 7 XP6 C7 C8 DOUB Y N 8 XP6 C4 O4 SING N N 9 XP6 C4 C9 DOUB Y N 10 XP6 C8 C9 SING Y N 11 XP6 C8 N1 SING Y N 12 XP6 C9 C3 SING Y N 13 XP6 N1 C2 SING Y N 14 XP6 C3 C2 DOUB Y N 15 XP6 C3 CB SING N N 16 XP6 CB CA SING N N 17 XP6 CA N SING N N 18 XP6 N H3 SING N N 19 XP6 N HN1 SING N N 20 XP6 CA HA1 SING N N 21 XP6 CA HA2 SING N N 22 XP6 CB HB2 SING N N 23 XP6 CB HB1 SING N N 24 XP6 C2 H2 SING N N 25 XP6 C5 H5 SING N N 26 XP6 C6 H6 SING N N 27 XP6 C7 H7 SING N N 28 XP6 N1 H1 SING N N 29 XP6 O1 H4 SING N N 30 XP6 O2 H8 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XP6 InChI InChI 1.06 "InChI=1S/C10H13N2O4P/c11-5-4-7-6-12-8-2-1-3-9(10(7)8)16-17(13,14)15/h1-3,6,12H,4-5,11H2,(H2,13,14,15)" XP6 InChIKey InChI 1.06 IKQGYCWFBVEAKF-UHFFFAOYSA-N XP6 SMILES_CANONICAL CACTVS 3.385 "NCCc1c[nH]c2cccc(O[P](O)(O)=O)c12" XP6 SMILES CACTVS 3.385 "NCCc1c[nH]c2cccc(O[P](O)(O)=O)c12" XP6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)OP(=O)(O)O)c(c[nH]2)CCN" XP6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)OP(=O)(O)O)c(c[nH]2)CCN" # _pdbx_chem_comp_identifier.comp_id XP6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[3-(2-azanylethyl)-1~{H}-indol-4-yl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XP6 "Create component" 2023-06-08 PDBE XP6 "Initial release" 2024-04-03 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XP6 _pdbx_chem_comp_synonyms.name "[3-(2-azanylethyl)-1~{H}-indol-4-yl] dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #