data_XP7
#
_chem_comp.id XP7
_chem_comp.name "(5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H24 Cl F N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-23
_chem_comp.pdbx_modified_date 2021-08-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 382.857
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XP7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7L4U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XP7 C4 C1 C 0 1 Y N N 28.618 116.027 280.010 4.477 -0.351 -0.123 C4 XP7 1
XP7 C5 C2 C 0 1 Y N N 30.886 117.355 279.208 6.820 -1.749 0.341 C5 XP7 2
XP7 C6 C3 C 0 1 Y N N 29.837 115.812 280.616 5.641 0.332 0.201 C6 XP7 3
XP7 C7 C4 C 0 1 N N N 15.628 115.286 281.886 -7.348 -1.937 0.270 C7 XP7 4
XP7 C8 C5 C 0 1 N N N 21.600 115.858 282.538 -2.873 1.472 0.155 C8 XP7 5
XP7 C10 C6 C 0 1 N N N 17.284 116.786 281.196 -7.755 0.433 0.486 C10 XP7 6
XP7 C13 C7 C 0 1 N N N 22.647 115.034 280.519 -0.530 2.179 0.184 C13 XP7 7
XP7 C15 C8 C 0 1 N N N 25.163 115.124 280.547 0.978 0.507 -0.899 C15 XP7 8
XP7 C17 C9 C 0 1 N N N 20.370 116.014 281.677 -4.011 0.701 -0.463 C17 XP7 9
XP7 C1 C10 C 0 1 Y N N 28.523 116.920 278.974 4.488 -1.735 -0.209 C1 XP7 10
XP7 C2 C11 C 0 1 Y N N 29.675 117.575 278.588 5.658 -2.432 0.023 C2 XP7 11
XP7 C3 C12 C 0 1 Y N N 30.990 116.458 280.240 6.810 -0.368 0.432 C3 XP7 12
XP7 C9 C13 C 0 1 N N N 15.800 116.566 281.091 -8.472 -0.936 0.420 C9 XP7 13
XP7 C11 C14 C 0 1 N N N 23.884 115.488 279.798 0.638 1.214 0.415 C11 XP7 14
XP7 C12 C15 C 0 1 N N N 25.134 115.677 281.957 -0.231 -0.303 -1.372 C12 XP7 15
XP7 C14 C16 C 0 1 N N N 23.874 115.345 282.684 -1.409 0.645 -1.623 C14 XP7 16
XP7 C16 C17 C 0 1 N N S 17.934 115.419 281.451 -6.436 0.132 -0.263 C16 XP7 17
XP7 C18 C18 C 0 1 N N N 26.345 115.852 279.841 2.166 -0.432 -0.680 C18 XP7 18
XP7 C19 C19 C 0 1 N N N 19.158 115.473 282.392 -5.280 0.914 0.365 C19 XP7 19
XP7 N20 N1 N 0 1 N N N 16.855 114.655 282.017 -6.219 -1.311 -0.105 N20 XP7 20
XP7 N21 N2 N 0 1 N N N 22.694 115.517 281.878 -1.649 1.433 -0.407 N21 XP7 21
XP7 O22 O1 O 0 1 N N N 14.559 114.905 282.354 -7.449 -3.130 0.464 O22 XP7 22
XP7 O23 O2 O 0 1 N N N 21.657 116.089 283.739 -3.059 2.126 1.160 O23 XP7 23
XP7 O24 O3 O 0 1 N N N 27.526 115.338 280.462 3.325 0.336 -0.351 O24 XP7 24
XP7 F25 F1 F 0 1 N N N 31.975 118.017 278.802 7.963 -2.432 0.567 F25 XP7 25
XP7 CL26 CL1 CL 0 0 N N N 29.970 114.707 281.891 5.628 2.065 0.315 CL26 XP7 26
XP7 H1 H1 H 0 1 N N N 17.668 117.216 280.259 -8.333 1.197 -0.034 H1 XP7 27
XP7 H2 H2 H 0 1 N N N 17.505 117.469 282.030 -7.559 0.728 1.517 H2 XP7 28
XP7 H3 H3 H 0 1 N N N 21.757 115.437 280.014 -0.840 2.611 1.135 H3 XP7 29
XP7 H4 H4 H 0 1 N N N 22.602 113.935 280.519 -0.221 2.974 -0.495 H4 XP7 30
XP7 H5 H5 H 0 1 N N N 25.324 114.036 280.549 1.236 1.249 -1.655 H5 XP7 31
XP7 H6 H6 H 0 1 N N N 20.513 115.462 280.737 -4.178 1.054 -1.481 H6 XP7 32
XP7 H7 H7 H 0 1 N N N 20.215 117.080 281.456 -3.763 -0.360 -0.482 H7 XP7 33
XP7 H8 H8 H 0 1 N N N 27.581 117.104 278.478 3.582 -2.268 -0.457 H8 XP7 34
XP7 H9 H9 H 0 1 N N N 29.626 118.283 277.774 5.666 -3.510 -0.044 H9 XP7 35
XP7 H10 H10 H 0 1 N N N 31.932 116.269 280.733 7.717 0.163 0.681 H10 XP7 36
XP7 H11 H11 H 0 1 N N N 15.238 117.397 281.541 -9.137 -0.977 -0.442 H11 XP7 37
XP7 H12 H12 H 0 1 N N N 15.486 116.435 280.045 -9.027 -1.120 1.340 H12 XP7 38
XP7 H13 H13 H 0 1 N N N 23.909 115.013 278.806 1.507 1.772 0.763 H13 XP7 39
XP7 H14 H14 H 0 1 N N N 23.843 116.581 279.680 0.356 0.474 1.164 H14 XP7 40
XP7 H15 H15 H 0 1 N N N 25.983 115.257 282.516 0.019 -0.825 -2.296 H15 XP7 41
XP7 H16 H16 H 0 1 N N N 25.233 116.771 281.907 -0.505 -1.028 -0.606 H16 XP7 42
XP7 H17 H17 H 0 1 N N N 23.795 116.000 283.564 -1.170 1.312 -2.451 H17 XP7 43
XP7 H18 H18 H 0 1 N N N 23.925 114.296 283.011 -2.299 0.064 -1.867 H18 XP7 44
XP7 H19 H19 H 0 1 N N N 18.245 114.986 280.489 -6.535 0.386 -1.318 H19 XP7 45
XP7 H20 H20 H 0 1 N N N 26.273 116.939 279.990 1.941 -1.118 0.137 H20 XP7 46
XP7 H21 H21 H 0 1 N N N 26.347 115.629 278.764 2.353 -1.000 -1.591 H21 XP7 47
XP7 H22 H22 H 0 1 N N N 18.925 116.124 283.247 -5.113 0.561 1.383 H22 XP7 48
XP7 H23 H23 H 0 1 N N N 19.378 114.458 282.754 -5.528 1.975 0.385 H23 XP7 49
XP7 H24 H24 H 0 1 N N N 16.977 113.765 282.457 -5.369 -1.756 -0.252 H24 XP7 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XP7 C2 C1 DOUB Y N 1
XP7 C2 C5 SING Y N 2
XP7 F25 C5 SING N N 3
XP7 C1 C4 SING Y N 4
XP7 C5 C3 DOUB Y N 5
XP7 C11 C13 SING N N 6
XP7 C11 C15 SING N N 7
XP7 C18 O24 SING N N 8
XP7 C18 C15 SING N N 9
XP7 C4 O24 SING N N 10
XP7 C4 C6 DOUB Y N 11
XP7 C3 C6 SING Y N 12
XP7 C13 N21 SING N N 13
XP7 C15 C12 SING N N 14
XP7 C6 CL26 SING N N 15
XP7 C9 C10 SING N N 16
XP7 C9 C7 SING N N 17
XP7 C10 C16 SING N N 18
XP7 C16 N20 SING N N 19
XP7 C16 C19 SING N N 20
XP7 C17 C19 SING N N 21
XP7 C17 C8 SING N N 22
XP7 N21 C8 SING N N 23
XP7 N21 C14 SING N N 24
XP7 C7 N20 SING N N 25
XP7 C7 O22 DOUB N N 26
XP7 C12 C14 SING N N 27
XP7 C8 O23 DOUB N N 28
XP7 C10 H1 SING N N 29
XP7 C10 H2 SING N N 30
XP7 C13 H3 SING N N 31
XP7 C13 H4 SING N N 32
XP7 C15 H5 SING N N 33
XP7 C17 H6 SING N N 34
XP7 C17 H7 SING N N 35
XP7 C1 H8 SING N N 36
XP7 C2 H9 SING N N 37
XP7 C3 H10 SING N N 38
XP7 C9 H11 SING N N 39
XP7 C9 H12 SING N N 40
XP7 C11 H13 SING N N 41
XP7 C11 H14 SING N N 42
XP7 C12 H15 SING N N 43
XP7 C12 H16 SING N N 44
XP7 C14 H17 SING N N 45
XP7 C14 H18 SING N N 46
XP7 C16 H19 SING N N 47
XP7 C18 H20 SING N N 48
XP7 C18 H21 SING N N 49
XP7 C19 H22 SING N N 50
XP7 C19 H23 SING N N 51
XP7 N20 H24 SING N N 52
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XP7 SMILES ACDLabs 12.01 "c3(OCC2CCN(C(=O)CCC1CCC(N1)=O)CC2)c(Cl)cc(cc3)F"
XP7 InChI InChI 1.03 "InChI=1S/C19H24ClFN2O3/c20-16-11-14(21)1-4-17(16)26-12-13-7-9-23(10-8-13)19(25)6-3-15-2-5-18(24)22-15/h1,4,11,13,15H,2-3,5-10,12H2,(H,22,24)/t15-/m0/s1"
XP7 InChIKey InChI 1.03 AKWBGFHQJGRBNZ-HNNXBMFYSA-N
XP7 SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(OCC2CCN(CC2)C(=O)CC[C@@H]3CCC(=O)N3)c(Cl)c1"
XP7 SMILES CACTVS 3.385 "Fc1ccc(OCC2CCN(CC2)C(=O)CC[CH]3CCC(=O)N3)c(Cl)c1"
XP7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1F)Cl)OCC2CCN(CC2)C(=O)CC[C@@H]3CCC(=O)N3"
XP7 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1F)Cl)OCC2CCN(CC2)C(=O)CCC3CCC(=O)N3"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XP7 "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one"
XP7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{S})-5-[3-[4-[(2-chloranyl-4-fluoranyl-phenoxy)methyl]piperidin-1-yl]-3-oxidanylidene-propyl]pyrrolidin-2-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XP7 "Create component" 2020-12-23 RCSB
XP7 "Initial release" 2021-08-11 RCSB
##