data_XP9 # _chem_comp.id XP9 _chem_comp.name "O-phosphono-N-(9-sulfanylnonanoyl)-L-threonine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H26 N O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-03-12 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.387 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3M30 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XP9 C C C 0 1 N N N 23.247 39.118 -19.971 -3.347 -1.579 -0.412 C XP9 1 XP9 N N N 0 1 N N N 23.495 37.734 -18.031 -1.776 0.042 0.479 N XP9 2 XP9 O O O 0 1 N N N 24.477 39.406 -19.793 -4.398 -2.412 -0.349 O XP9 3 XP9 P P P 0 1 N N N 22.206 42.166 -17.736 -5.995 0.888 -0.488 P XP9 4 XP9 C1 C1 C 0 1 N N N 23.242 36.498 -17.602 -0.536 -0.479 0.565 C1 XP9 5 XP9 O1 O1 O 0 1 N N N 22.143 35.932 -17.766 -0.385 -1.632 0.911 O1 XP9 6 XP9 C2 C2 C 0 1 N N N 24.385 35.784 -16.904 0.663 0.371 0.232 C2 XP9 7 XP9 C3 C3 C 0 1 N N N 24.148 34.260 -16.795 1.939 -0.455 0.411 C3 XP9 8 XP9 C4 C4 C 0 1 N N N 25.386 33.467 -16.323 3.156 0.408 0.072 C4 XP9 9 XP9 C5 C5 C 0 1 N N N 25.956 33.919 -14.976 4.432 -0.417 0.251 C5 XP9 10 XP9 C6 C6 C 0 1 N N N 24.865 34.210 -13.898 5.649 0.445 -0.087 C6 XP9 11 XP9 C7 C7 C 0 1 N N N 24.004 32.986 -13.552 6.925 -0.380 0.091 C7 XP9 12 XP9 C8 C8 C 0 1 N N N 24.555 31.831 -12.677 8.142 0.482 -0.247 C8 XP9 13 XP9 C9 C9 C 0 1 N N N 25.551 32.135 -11.549 9.418 -0.343 -0.068 C9 XP9 14 XP9 S9 S9 S 0 1 N N N 26.331 30.558 -11.035 10.861 0.680 -0.469 S9 XP9 15 XP9 CA CA C 0 1 N N S 22.501 38.496 -18.810 -2.942 -0.784 0.802 CA XP9 16 XP9 CB CB C 0 1 N N R 21.714 39.587 -18.072 -4.102 0.116 1.233 CB XP9 17 XP9 CG CG C 0 1 N N N 21.057 39.052 -16.775 -3.650 1.013 2.387 CG XP9 18 XP9 O1P O1P O 0 1 N N N 23.558 42.882 -17.528 -6.135 2.020 -1.625 O1P XP9 19 XP9 O2P O2P O 0 1 N N N 21.619 42.413 -19.095 -6.982 1.142 0.585 O2P XP9 20 XP9 O3P O3P O 0 1 N N N 21.250 42.416 -16.607 -6.267 -0.560 -1.136 O3P XP9 21 XP9 O4P O4P O 0 1 N N N 22.641 40.607 -17.653 -4.509 0.929 0.130 O4P XP9 22 XP9 OXT OXT O 0 1 N N N 22.609 39.327 -21.050 -2.723 -1.471 -1.441 OXT XP9 23 XP9 HN HN H 0 1 N N N 24.378 38.154 -17.820 -1.897 0.964 0.202 HN XP9 24 XP9 HO HO H 0 1 N N N 24.830 39.795 -20.585 -4.620 -2.900 -1.154 HO XP9 25 XP9 H2 H2 H 0 1 N N N 25.307 35.954 -17.480 0.592 0.711 -0.801 H2 XP9 26 XP9 H2A H2A H 0 1 N N N 24.486 36.195 -15.889 0.693 1.234 0.897 H2A XP9 27 XP9 H3 H3 H 0 1 N N N 23.339 34.092 -16.069 2.010 -0.795 1.444 H3 XP9 28 XP9 H3A H3A H 0 1 N N N 23.864 33.888 -17.790 1.909 -1.318 -0.255 H3A XP9 29 XP9 H4 H4 H 0 1 N N N 25.093 32.411 -16.227 3.085 0.748 -0.961 H4 XP9 30 XP9 H4A H4A H 0 1 N N N 26.174 33.591 -17.080 3.186 1.271 0.738 H4A XP9 31 XP9 H5 H5 H 0 1 N N N 26.607 33.119 -14.595 4.503 -0.757 1.284 H5 XP9 32 XP9 H5A H5A H 0 1 N N N 26.528 34.844 -15.141 4.402 -1.281 -0.414 H5A XP9 33 XP9 H6 H6 H 0 1 N N N 25.371 34.544 -12.980 5.578 0.785 -1.120 H6 XP9 34 XP9 H6A H6A H 0 1 N N N 24.202 34.997 -14.286 5.679 1.308 0.578 H6A XP9 35 XP9 H7 H7 H 0 1 N N N 23.132 33.380 -13.009 6.996 -0.720 1.125 H7 XP9 36 XP9 H7A H7A H 0 1 N N N 23.739 32.528 -14.516 6.895 -1.243 -0.574 H7A XP9 37 XP9 H8 H8 H 0 1 N N N 23.681 31.367 -12.197 8.071 0.822 -1.280 H8 XP9 38 XP9 H8A H8A H 0 1 N N N 25.072 31.146 -13.365 8.172 1.345 0.418 H8A XP9 39 XP9 H9 H9 H 0 1 N N N 26.321 32.834 -11.907 9.489 -0.683 0.965 H9 XP9 40 XP9 H9A H9A H 0 1 N N N 25.024 32.588 -10.696 9.388 -1.206 -0.734 H9A XP9 41 XP9 HS9 HS9 H 0 1 N N N 27.137 30.949 -10.093 11.892 -0.161 -0.272 HS9 XP9 42 XP9 HA HA H 0 1 N N N 21.722 37.775 -19.098 -2.690 -1.466 1.615 HA XP9 43 XP9 HB HB H 0 1 N N N 20.938 39.956 -18.758 -4.939 -0.501 1.558 HB XP9 44 XP9 HG HG H 0 1 N N N 20.505 39.865 -16.280 -2.812 1.630 2.062 HG XP9 45 XP9 HGA HGA H 0 1 N N N 20.362 38.237 -17.025 -4.476 1.654 2.694 HGA XP9 46 XP9 HGB HGB H 0 1 N N N 21.837 38.674 -16.098 -3.339 0.393 3.228 HGB XP9 47 XP9 HO1P HO1P H 0 0 N N N 23.786 43.364 -18.314 -7.007 2.053 -2.041 HO1P XP9 48 XP9 HO3P HO3P H 0 0 N N N 20.412 42.696 -16.957 -5.656 -0.794 -1.848 HO3P XP9 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XP9 OXT C DOUB N N 1 XP9 C O SING N N 2 XP9 C CA SING N N 3 XP9 CA N SING N N 4 XP9 N C1 SING N N 5 XP9 N HN SING N N 6 XP9 O HO SING N N 7 XP9 O2P P DOUB N N 8 XP9 P O4P SING N N 9 XP9 P O1P SING N N 10 XP9 P O3P SING N N 11 XP9 O1 C1 DOUB N N 12 XP9 C1 C2 SING N N 13 XP9 C2 C3 SING N N 14 XP9 C2 H2 SING N N 15 XP9 C2 H2A SING N N 16 XP9 C3 C4 SING N N 17 XP9 C3 H3 SING N N 18 XP9 C3 H3A SING N N 19 XP9 C4 C5 SING N N 20 XP9 C4 H4 SING N N 21 XP9 C4 H4A SING N N 22 XP9 C5 C6 SING N N 23 XP9 C5 H5 SING N N 24 XP9 C5 H5A SING N N 25 XP9 C6 C7 SING N N 26 XP9 C6 H6 SING N N 27 XP9 C6 H6A SING N N 28 XP9 C7 C8 SING N N 29 XP9 C7 H7 SING N N 30 XP9 C7 H7A SING N N 31 XP9 C8 C9 SING N N 32 XP9 C8 H8 SING N N 33 XP9 C8 H8A SING N N 34 XP9 C9 S9 SING N N 35 XP9 C9 H9 SING N N 36 XP9 C9 H9A SING N N 37 XP9 S9 HS9 SING N N 38 XP9 CA CB SING N N 39 XP9 CA HA SING N N 40 XP9 CB O4P SING N N 41 XP9 CB CG SING N N 42 XP9 CB HB SING N N 43 XP9 CG HG SING N N 44 XP9 CG HGA SING N N 45 XP9 CG HGB SING N N 46 XP9 O1P HO1P SING N N 47 XP9 O3P HO3P SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XP9 SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)CCCCCCCCS)C(OP(=O)(O)O)C" XP9 SMILES_CANONICAL CACTVS 3.370 "C[C@@H](O[P](O)(O)=O)[C@H](NC(=O)CCCCCCCCS)C(O)=O" XP9 SMILES CACTVS 3.370 "C[CH](O[P](O)(O)=O)[CH](NC(=O)CCCCCCCCS)C(O)=O" XP9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H]([C@@H](C(=O)O)NC(=O)CCCCCCCCS)OP(=O)(O)O" XP9 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C(C(=O)O)NC(=O)CCCCCCCCS)OP(=O)(O)O" XP9 InChI InChI 1.03 "InChI=1S/C13H26NO7PS/c1-10(21-22(18,19)20)12(13(16)17)14-11(15)8-6-4-2-3-5-7-9-23/h10,12,23H,2-9H2,1H3,(H,14,15)(H,16,17)(H2,18,19,20)/t10-,12+/m1/s1" XP9 InChIKey InChI 1.03 WUTPSGIFCCYDED-PWSUYJOCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XP9 "SYSTEMATIC NAME" ACDLabs 12.01 "O-phosphono-N-(9-sulfanylnonanoyl)-L-threonine" XP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R)-3-phosphonooxy-2-(9-sulfanylnonanoylamino)butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XP9 "Create component" 2010-03-12 RCSB XP9 "Modify descriptor" 2011-06-04 RCSB #