data_XPD
#
_chem_comp.id XPD
_chem_comp.name "6-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-2H-1,4-benzoxazin-3(4H)-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H20 Cl F N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-23
_chem_comp.pdbx_modified_date 2021-08-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 418.846
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XPD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7L4T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XPD C4 C1 C 0 1 Y N N -30.072 10.096 -61.382 6.446 -0.571 1.212 C4 XPD 1
XPD C5 C2 C 0 1 Y N N -19.255 11.860 -57.416 -3.752 -0.369 -0.569 C5 XPD 2
XPD C6 C3 C 0 1 Y N N -31.228 11.392 -59.749 6.304 1.624 0.254 C6 XPD 3
XPD C7 C4 C 0 1 Y N N -20.447 11.307 -57.860 -3.559 -1.504 0.223 C7 XPD 4
XPD C8 C5 C 0 1 Y N N -18.078 11.582 -58.088 -4.633 0.611 -0.158 C8 XPD 5
XPD C10 C6 C 0 1 Y N N -28.835 11.520 -59.924 4.487 0.080 -0.006 C10 XPD 6
XPD C13 C7 C 0 1 N N N -15.607 11.580 -58.124 -5.443 2.830 -0.375 C13 XPD 7
XPD C15 C8 C 0 1 N N N -15.791 10.416 -59.039 -5.858 2.781 1.075 C15 XPD 8
XPD C17 C9 C 0 1 N N N -25.182 11.839 -57.818 0.846 -3.093 -0.642 C17 XPD 9
XPD C20 C10 C 0 1 N N N -25.257 12.053 -59.317 1.344 -1.659 -0.832 C20 XPD 10
XPD C21 C11 C 0 1 N N N -26.469 11.361 -59.918 2.736 -1.516 -0.212 C21 XPD 11
XPD C1 C12 C 0 1 Y N N -20.466 10.473 -58.969 -4.261 -1.643 1.423 C1 XPD 12
XPD C2 C13 C 0 1 Y N N -19.297 10.194 -59.642 -5.143 -0.663 1.826 C2 XPD 13
XPD C3 C14 C 0 1 Y N N -28.866 10.610 -60.959 5.190 -0.869 0.721 C3 XPD 14
XPD C9 C15 C 0 1 Y N N -18.113 10.751 -59.193 -5.331 0.467 1.044 C9 XPD 15
XPD C11 C16 C 0 1 Y N N -31.248 10.483 -60.780 7.004 0.675 0.979 C11 XPD 16
XPD C12 C17 C 0 1 Y N N -30.023 11.906 -59.328 5.047 1.328 -0.240 C12 XPD 17
XPD C14 C18 C 0 1 N N N -21.725 11.591 -57.130 -2.615 -2.555 -0.206 C14 XPD 18
XPD C16 C19 C 0 1 N N N -23.950 11.628 -59.934 0.380 -0.687 -0.148 C16 XPD 19
XPD C18 C20 C 0 1 N N N -22.796 12.389 -59.298 -1.004 -0.808 -0.795 C18 XPD 20
XPD C19 C21 C 0 1 N N N -23.998 12.525 -57.165 -0.532 -3.241 -1.294 C19 XPD 21
XPD N22 N1 N 0 1 N N N -16.825 12.108 -57.697 -4.837 1.761 -0.935 N22 XPD 22
XPD N23 N2 N 0 1 N N N -22.744 12.242 -57.844 -1.428 -2.214 -0.745 N23 XPD 23
XPD O24 O1 O 0 1 N N N -14.477 11.967 -57.832 -5.658 3.824 -1.036 O24 XPD 24
XPD O25 O2 O 0 1 N N N -21.830 11.229 -55.961 -2.909 -3.727 -0.075 O25 XPD 25
XPD O26 O3 O 0 1 N N N -16.947 10.454 -59.871 -6.196 1.439 1.433 O26 XPD 26
XPD O27 O4 O 0 1 N N N -27.634 12.074 -59.467 3.250 -0.212 -0.490 O27 XPD 27
XPD F28 F1 F 0 1 N N N -32.420 9.973 -61.201 8.233 0.964 1.460 F28 XPD 28
XPD CL29 CL1 CL 0 0 N N N -30.066 13.037 -58.035 4.169 2.518 -1.149 CL29 XPD 29
XPD H1 H1 H 0 1 N N N -30.095 9.383 -62.193 6.991 -1.309 1.782 H1 XPD 30
XPD H2 H2 H 0 1 N N N -19.246 12.505 -56.550 -3.211 -0.257 -1.497 H2 XPD 31
XPD H3 H3 H 0 1 N N N -32.148 11.699 -59.275 6.741 2.595 0.073 H3 XPD 32
XPD H4 H4 H 0 1 N N N -15.850 9.508 -58.421 -5.035 3.127 1.700 H4 XPD 33
XPD H5 H5 H 0 1 N N N -14.908 10.358 -59.692 -6.724 3.426 1.226 H5 XPD 34
XPD H6 H6 H 0 1 N N N -26.104 12.231 -57.364 1.546 -3.786 -1.110 H6 XPD 35
XPD H7 H7 H 0 1 N N N -25.108 10.759 -57.624 0.771 -3.315 0.422 H7 XPD 36
XPD H8 H8 H 0 1 N N N -25.373 13.133 -59.492 1.396 -1.430 -1.897 H8 XPD 37
XPD H9 H9 H 0 1 N N N -26.512 10.315 -59.579 2.669 -1.658 0.867 H9 XPD 38
XPD H10 H10 H 0 1 N N N -26.412 11.388 -61.016 3.402 -2.267 -0.637 H10 XPD 39
XPD H11 H11 H 0 1 N N N -21.398 10.042 -59.305 -4.114 -2.520 2.035 H11 XPD 40
XPD H12 H12 H 0 1 N N N -19.305 9.549 -60.508 -5.686 -0.773 2.753 H12 XPD 41
XPD H13 H13 H 0 1 N N N -27.948 10.301 -61.437 4.755 -1.841 0.903 H13 XPD 42
XPD H14 H14 H 0 1 N N N -23.806 10.549 -59.773 0.309 -0.931 0.912 H14 XPD 43
XPD H15 H15 H 0 1 N N N -23.973 11.838 -61.014 0.748 0.333 -0.264 H15 XPD 44
XPD H16 H16 H 0 1 N N N -21.853 12.013 -59.722 -1.717 -0.192 -0.248 H16 XPD 45
XPD H17 H17 H 0 1 N N N -22.906 13.457 -59.538 -0.952 -0.478 -1.832 H17 XPD 46
XPD H18 H18 H 0 1 N N N -23.921 12.179 -56.124 -0.442 -3.109 -2.372 H18 XPD 47
XPD H19 H19 H 0 1 N N N -24.169 13.612 -57.179 -0.934 -4.232 -1.079 H19 XPD 48
XPD H20 H20 H 0 1 N N N -16.812 12.898 -57.084 -4.548 1.787 -1.860 H20 XPD 49
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XPD C4 C3 DOUB Y N 1
XPD C4 C11 SING Y N 2
XPD F28 C11 SING N N 3
XPD C3 C10 SING Y N 4
XPD C11 C6 DOUB Y N 5
XPD C16 C20 SING N N 6
XPD C16 C18 SING N N 7
XPD C10 O27 SING N N 8
XPD C10 C12 DOUB Y N 9
XPD C21 O27 SING N N 10
XPD C21 C20 SING N N 11
XPD O26 C9 SING N N 12
XPD O26 C15 SING N N 13
XPD C6 C12 SING Y N 14
XPD C2 C9 DOUB Y N 15
XPD C2 C1 SING Y N 16
XPD C12 CL29 SING N N 17
XPD C20 C17 SING N N 18
XPD C18 N23 SING N N 19
XPD C9 C8 SING Y N 20
XPD C15 C13 SING N N 21
XPD C1 C7 DOUB Y N 22
XPD C13 O24 DOUB N N 23
XPD C13 N22 SING N N 24
XPD C8 N22 SING N N 25
XPD C8 C5 DOUB Y N 26
XPD C7 C5 SING Y N 27
XPD C7 C14 SING N N 28
XPD N23 C19 SING N N 29
XPD N23 C14 SING N N 30
XPD C17 C19 SING N N 31
XPD C14 O25 DOUB N N 32
XPD C4 H1 SING N N 33
XPD C5 H2 SING N N 34
XPD C6 H3 SING N N 35
XPD C15 H4 SING N N 36
XPD C15 H5 SING N N 37
XPD C17 H6 SING N N 38
XPD C17 H7 SING N N 39
XPD C20 H8 SING N N 40
XPD C21 H9 SING N N 41
XPD C21 H10 SING N N 42
XPD C1 H11 SING N N 43
XPD C2 H12 SING N N 44
XPD C3 H13 SING N N 45
XPD C16 H14 SING N N 46
XPD C16 H15 SING N N 47
XPD C18 H16 SING N N 48
XPD C18 H17 SING N N 49
XPD C19 H18 SING N N 50
XPD C19 H19 SING N N 51
XPD N22 H20 SING N N 52
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XPD SMILES ACDLabs 12.01 "c4cc(OCC3CCN(C(c2cc1NC(=O)COc1cc2)=O)CC3)c(cc4F)Cl"
XPD InChI InChI 1.03 "InChI=1S/C21H20ClFN2O4/c22-16-10-15(23)2-4-18(16)28-11-13-5-7-25(8-6-13)21(27)14-1-3-19-17(9-14)24-20(26)12-29-19/h1-4,9-10,13H,5-8,11-12H2,(H,24,26)"
XPD InChIKey InChI 1.03 UUUUFICXTVCJQV-UHFFFAOYSA-N
XPD SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(OCC2CCN(CC2)C(=O)c3ccc4OCC(=O)Nc4c3)c(Cl)c1"
XPD SMILES CACTVS 3.385 "Fc1ccc(OCC2CCN(CC2)C(=O)c3ccc4OCC(=O)Nc4c3)c(Cl)c1"
XPD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CCC(CC3)COc4ccc(cc4Cl)F)NC(=O)CO2"
XPD SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CCC(CC3)COc4ccc(cc4Cl)F)NC(=O)CO2"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XPD "SYSTEMATIC NAME" ACDLabs 12.01 "6-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-2H-1,4-benzoxazin-3(4H)-one"
XPD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[(2-chloranyl-4-fluoranyl-phenoxy)methyl]piperidin-1-yl]carbonyl-4~{H}-1,4-benzoxazin-3-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XPD "Create component" 2020-12-23 RCSB
XPD "Initial release" 2021-08-11 RCSB
##