data_XPK # _chem_comp.id XPK _chem_comp.name "[(1~{R})-1-[(3~{S},5~{S},8~{R},9~{S},10~{S},13~{S},17~{R})-3-methanoyloxy-10,13-dimethyl-1,2,3,4,5,6,7,8,9,11,12,13,14,15,16,17-hexadecahydrocyclopenta[a]phenanthren-17-yl]ethyl]-methylidyne-azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H35 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-05 _chem_comp.pdbx_modified_date 2023-08-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.530 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XPK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FDA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XPK C10 C1 C 0 1 N N N -15.092 -34.065 -57.669 1.676 -2.438 -0.152 C10 XPK 1 XPK C13 C2 C 0 1 N N S -14.896 -30.471 -56.099 4.349 0.267 0.452 C13 XPK 2 XPK C15 C3 C 0 1 N N N -13.561 -28.922 -57.239 6.555 1.028 0.936 C15 XPK 3 XPK C17 C4 C 0 1 N N R -16.453 -37.108 -55.448 -2.021 -1.403 -0.220 C17 XPK 4 XPK C20 C5 C 0 1 N N R -17.491 -38.402 -53.740 -4.151 -0.280 0.013 C20 XPK 5 XPK C21 C6 C 0 1 N N R -17.807 -38.558 -52.175 -4.667 1.125 0.328 C21 XPK 6 XPK C24 C7 C 0 1 N N N -19.264 -38.561 -51.873 -5.081 1.820 -0.970 C24 XPK 7 XPK C26 C8 C 0 1 N N N -19.057 -37.297 -55.012 -3.009 -0.260 -2.273 C26 XPK 8 XPK C01 C9 C 0 1 N N N -17.645 -32.908 -56.419 1.718 -0.079 -1.883 C01 XPK 9 XPK C02 C10 C 0 1 N N S -16.350 -33.092 -55.613 1.545 0.046 -0.368 C02 XPK 10 XPK C03 C11 C 0 1 N N N -16.334 -31.994 -54.540 2.136 1.375 0.105 C03 XPK 11 XPK C04 C12 C 0 1 N N N -16.149 -30.546 -55.156 3.626 1.423 -0.242 C04 XPK 12 XPK C05 C13 C 0 1 N N S -16.392 -34.498 -54.981 0.056 -0.002 -0.019 C05 XPK 13 XPK C06 C14 C 0 1 N N N -17.690 -34.671 -53.925 -0.671 1.137 -0.743 C06 XPK 14 XPK C07 C15 C 0 1 N N N -17.625 -36.105 -53.221 -2.140 1.117 -0.330 C07 XPK 15 XPK C08 C16 C 0 1 N N R -16.362 -35.637 -56.050 -0.538 -1.329 -0.488 C08 XPK 16 XPK C09 C17 C 0 1 N N N -15.122 -35.505 -56.983 0.188 -2.488 0.199 C09 XPK 17 XPK C11 C18 C 0 1 N N S -15.111 -32.969 -56.602 2.268 -1.110 0.325 C11 XPK 18 XPK C12 C19 C 0 1 N N N -14.987 -31.559 -57.232 3.757 -1.062 -0.022 C12 XPK 19 XPK C18 C20 C 0 1 N N N -15.389 -37.498 -54.859 -2.351 -1.406 1.284 C18 XPK 20 XPK C19 C21 C 0 1 N N N -15.887 -38.665 -53.930 -3.853 -1.040 1.319 C19 XPK 21 XPK C23 C22 C -1 1 N N N -16.846 -40.811 -51.471 -6.694 0.960 1.893 C23 XPK 22 XPK C25 C23 C 0 1 N N S -17.690 -37.274 -54.274 -2.806 -0.194 -0.757 C25 XPK 23 XPK N22 N1 N 1 1 N N N -17.269 -39.821 -51.774 -5.797 1.033 1.200 N22 XPK 24 XPK O14 O1 O 0 1 N N N -14.832 -29.248 -56.684 5.762 0.313 0.122 O14 XPK 25 XPK O16 O2 O 0 1 N N N -12.624 -29.645 -57.086 7.740 1.102 0.712 O16 XPK 26 XPK H101 H1 H 0 0 N N N -14.177 -33.969 -58.272 2.193 -3.263 0.339 H101 XPK 27 XPK H102 H2 H 0 0 N N N -15.972 -33.954 -58.319 1.798 -2.524 -1.231 H102 XPK 28 XPK H131 H3 H 0 0 N N N -13.998 -30.674 -55.497 4.224 0.356 1.531 H131 XPK 29 XPK H151 H4 H 0 0 N N N -13.444 -28.010 -57.805 6.133 1.536 1.791 H151 XPK 30 XPK H171 H5 H 0 0 N N N -16.728 -37.780 -56.274 -2.424 -2.308 -0.676 H171 XPK 31 XPK H201 H7 H 0 0 N N N -18.016 -39.213 -54.265 -4.877 -0.833 -0.584 H201 XPK 32 XPK H211 H8 H 0 0 N N N -17.314 -37.735 -51.637 -3.880 1.701 0.814 H211 XPK 33 XPK H242 H9 H 0 0 N N N -19.414 -38.670 -50.789 -5.786 1.188 -1.512 H242 XPK 34 XPK H241 H10 H 0 0 N N N -19.710 -37.614 -52.211 -5.553 2.774 -0.738 H241 XPK 35 XPK H243 H11 H 0 0 N N N -19.745 -39.401 -52.396 -4.199 1.991 -1.587 H243 XPK 36 XPK H263 H12 H 0 0 N N N -19.238 -36.318 -55.480 -3.617 0.585 -2.595 H263 XPK 37 XPK H261 H13 H 0 0 N N N -19.042 -38.077 -55.788 -2.040 -0.222 -2.771 H261 XPK 38 XPK H262 H14 H 0 0 N N N -19.859 -37.513 -54.291 -3.514 -1.191 -2.531 H262 XPK 39 XPK H011 H15 H 0 0 N N N -17.701 -33.676 -57.204 2.779 -0.044 -2.131 H011 XPK 40 XPK H013 H16 H 0 0 N N N -18.511 -33.005 -55.748 1.296 -1.026 -2.220 H013 XPK 41 XPK H012 H17 H 0 0 N N N -17.650 -31.910 -56.882 1.202 0.745 -2.376 H012 XPK 42 XPK H031 H18 H 0 0 N N N -17.286 -32.024 -53.990 1.622 2.199 -0.389 H031 XPK 43 XPK H032 H19 H 0 0 N N N -15.503 -32.191 -53.846 2.012 1.465 1.184 H032 XPK 44 XPK H042 H20 H 0 0 N N N -16.022 -29.824 -54.336 4.047 2.370 0.096 H042 XPK 45 XPK H041 H21 H 0 0 N N N -17.047 -30.288 -55.736 3.750 1.334 -1.321 H041 XPK 46 XPK H051 H22 H 0 0 N N N -15.487 -34.608 -54.365 -0.072 0.107 1.058 H051 XPK 47 XPK H061 H23 H 0 0 N N N -17.644 -33.884 -53.157 -0.225 2.091 -0.463 H061 XPK 48 XPK H062 H24 H 0 0 N N N -18.632 -34.581 -54.486 -0.591 0.995 -1.820 H062 XPK 49 XPK H071 H25 H 0 0 N N N -16.683 -36.184 -52.659 -2.210 1.218 0.753 H071 XPK 50 XPK H072 H26 H 0 0 N N N -18.474 -36.201 -52.529 -2.657 1.952 -0.803 H072 XPK 51 XPK H081 H27 H 0 0 N N N -17.252 -35.503 -56.682 -0.373 -1.424 -1.562 H081 XPK 52 XPK H092 H28 H 0 0 N N N -15.173 -36.278 -57.764 -0.234 -3.434 -0.140 H092 XPK 53 XPK H091 H29 H 0 0 N N N -14.206 -35.643 -56.390 0.066 -2.403 1.279 H091 XPK 54 XPK H111 H30 H 0 0 N N N -14.213 -33.114 -55.984 2.142 -1.023 1.405 H111 XPK 55 XPK H122 H31 H 0 0 N N N -15.870 -31.361 -57.858 3.882 -1.151 -1.101 H122 XPK 56 XPK H121 H32 H 0 0 N N N -14.080 -31.516 -57.853 4.272 -1.886 0.472 H121 XPK 57 XPK H182 H33 H 0 0 N N N -14.649 -37.863 -55.586 -2.194 -2.397 1.710 H182 XPK 58 XPK H181 H34 H 0 0 N N N -14.948 -36.684 -54.265 -1.753 -0.662 1.810 H181 XPK 59 XPK H192 H35 H 0 0 N N N -15.372 -38.632 -52.958 -4.048 -0.397 2.178 H192 XPK 60 XPK H191 H36 H 0 0 N N N -15.709 -39.641 -54.406 -4.467 -1.938 1.378 H191 XPK 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XPK C10 C09 SING N N 1 XPK C10 C11 SING N N 2 XPK C13 C04 SING N N 3 XPK C13 C12 SING N N 4 XPK C13 O14 SING N N 5 XPK C15 O14 SING N N 6 XPK C15 O16 DOUB N N 7 XPK C17 C08 SING N N 8 XPK C17 C18 SING N N 9 XPK C20 C21 SING N N 10 XPK C20 C19 SING N N 11 XPK C20 C25 SING N N 12 XPK C21 C24 SING N N 13 XPK C21 N22 SING N N 14 XPK C26 C25 SING N N 15 XPK C01 C02 SING N N 16 XPK C02 C03 SING N N 17 XPK C02 C05 SING N N 18 XPK C02 C11 SING N N 19 XPK C03 C04 SING N N 20 XPK C05 C06 SING N N 21 XPK C05 C08 SING N N 22 XPK C06 C07 SING N N 23 XPK C07 C25 SING N N 24 XPK C08 C09 SING N N 25 XPK C11 C12 SING N N 26 XPK C18 C19 SING N N 27 XPK C23 N22 TRIP N N 28 XPK C10 H101 SING N N 29 XPK C10 H102 SING N N 30 XPK C13 H131 SING N N 31 XPK C15 H151 SING N N 32 XPK C17 H171 SING N N 33 XPK C20 H201 SING N N 34 XPK C21 H211 SING N N 35 XPK C24 H242 SING N N 36 XPK C24 H241 SING N N 37 XPK C24 H243 SING N N 38 XPK C26 H263 SING N N 39 XPK C26 H261 SING N N 40 XPK C26 H262 SING N N 41 XPK C01 H011 SING N N 42 XPK C01 H013 SING N N 43 XPK C01 H012 SING N N 44 XPK C03 H031 SING N N 45 XPK C03 H032 SING N N 46 XPK C04 H042 SING N N 47 XPK C04 H041 SING N N 48 XPK C05 H051 SING N N 49 XPK C06 H061 SING N N 50 XPK C06 H062 SING N N 51 XPK C07 H071 SING N N 52 XPK C07 H072 SING N N 53 XPK C08 H081 SING N N 54 XPK C09 H092 SING N N 55 XPK C09 H091 SING N N 56 XPK C11 H111 SING N N 57 XPK C12 H122 SING N N 58 XPK C12 H121 SING N N 59 XPK C18 H182 SING N N 60 XPK C18 H181 SING N N 61 XPK C19 H192 SING N N 62 XPK C19 H191 SING N N 63 XPK C25 C17 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XPK SMILES ACDLabs 12.01 "[C-]#[N+]C(C)C1CCC2C3CCC4CC(CCC4(C)C3CCC12C)OC=O" XPK InChI InChI 1.06 "InChI=1S/C23H35NO2/c1-15(24-4)19-7-8-20-18-6-5-16-13-17(26-14-25)9-11-22(16,2)21(18)10-12-23(19,20)3/h14-21H,5-13H2,1-3H3/t15-,16+,17+,18+,19+,20-,21+,22+,23-/m1/s1" XPK InChIKey InChI 1.06 YWSGHBLCVWYPMV-GNHYYDODSA-N XPK SMILES_CANONICAL CACTVS 3.385 "C[C@@H]([N+]#[C-])[C@@H]1CC[C@@H]2[C@@H]3CC[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]12C)OC=O" XPK SMILES CACTVS 3.385 "C[CH]([N+]#[C-])[CH]1CC[CH]2[CH]3CC[CH]4C[CH](CC[C]4(C)[CH]3CC[C]12C)OC=O" XPK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H]1CC[C@H]2[C@@]1(CC[C@H]3[C@H]2CC[C@@H]4[C@@]3(CC[C@@H](C4)OC=O)C)C)[N+]#[C-]" XPK SMILES "OpenEye OEToolkits" 2.0.7 "CC(C1CCC2C1(CCC3C2CCC4C3(CCC(C4)OC=O)C)C)[N+]#[C-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XPK "SYSTEMATIC NAME" ACDLabs 12.01 "(20R)-20-isocyano-5alpha,8alpha-pregnan-3alpha-yl formate" XPK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{S},5~{S},8~{R},9~{S},10~{S},13~{S},14~{R},17~{R})-17-[(1~{R})-1-isocyanoethyl]-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-3-yl] methanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XPK "Create component" 2022-12-05 RCSB XPK "Initial release" 2023-08-23 RCSB #