data_XPW # _chem_comp.id XPW _chem_comp.name "1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H28 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms GSK2798745 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-05 _chem_comp.pdbx_modified_date 2023-07-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 460.528 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XPW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FC7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XPW C12 C1 C 0 1 N N N 113.805 112.883 156.924 1.689 1.681 0.243 C12 XPW 1 XPW C13 C2 C 0 1 N N S 114.822 112.041 156.280 0.249 1.564 -0.279 C13 XPW 2 XPW C14 C3 C 0 1 N N N 116.195 112.704 156.427 -0.101 2.776 -1.137 C14 XPW 3 XPW C15 C4 C 0 1 N N N 117.281 112.153 155.496 -1.529 2.631 -1.668 C15 XPW 4 XPW C16 C5 C 0 1 N N N 116.818 111.914 154.059 -2.501 2.521 -0.492 C16 XPW 5 XPW C17 C6 C 0 1 N N S 115.492 111.163 153.978 -2.151 1.291 0.348 C17 XPW 6 XPW C18 C7 C 0 1 N N N 115.722 109.736 154.472 -2.247 0.035 -0.522 C18 XPW 7 XPW C19 C8 C 0 1 N N N 115.010 111.138 152.512 -3.130 1.177 1.518 C19 XPW 8 XPW C23 C9 C 0 1 Y N N 111.486 110.379 152.336 -6.405 0.235 0.190 C23 XPW 9 XPW C01 C10 C 0 1 N N N 107.118 111.937 160.120 8.328 0.069 1.547 C01 XPW 10 XPW C02 C11 C 0 1 N N N 107.740 113.193 159.516 7.725 -0.815 0.453 C02 XPW 11 XPW C03 C12 C 0 1 N N N 107.831 114.279 160.588 8.493 -0.605 -0.853 C03 XPW 12 XPW O04 O1 O 0 1 N N N 106.950 113.643 158.455 7.818 -2.186 0.845 O04 XPW 13 XPW C05 C13 C 0 1 Y N N 109.150 112.869 159.007 6.278 -0.447 0.251 C05 XPW 14 XPW C06 C14 C 0 1 Y N N 109.382 112.744 157.645 5.493 -1.187 -0.614 C06 XPW 15 XPW N07 N1 N 0 1 Y N N 110.604 112.464 157.213 4.223 -0.867 -0.794 N07 XPW 16 XPW C08 C15 C 0 1 Y N N 111.588 112.308 158.081 3.702 0.165 -0.144 C08 XPW 17 XPW C09 C16 C 0 1 Y N N 111.355 112.436 159.439 4.495 0.908 0.726 C09 XPW 18 XPW N10 N2 N 0 1 Y N N 110.135 112.715 159.873 5.761 0.580 0.904 N10 XPW 19 XPW N11 N3 N 0 1 N N N 112.932 112.001 157.609 2.363 0.505 -0.331 N11 XPW 20 XPW N20 N4 N 0 1 Y N N 113.670 110.581 152.443 -4.495 1.044 1.002 N20 XPW 21 XPW C21 C17 C 0 1 Y N N 113.363 109.292 152.416 -5.390 2.051 0.820 C21 XPW 22 XPW N22 N5 N 0 1 Y N N 112.050 109.141 152.353 -6.506 1.578 0.345 N22 XPW 23 XPW C24 C18 C 0 1 Y N N 110.143 110.825 152.277 -7.285 -0.748 -0.278 C24 XPW 24 XPW C25 C19 C 0 1 Y N N 109.860 112.188 152.275 -6.893 -2.052 -0.319 C25 XPW 25 XPW C26 C20 C 0 1 Y N N 110.902 113.112 152.332 -5.608 -2.423 0.104 C26 XPW 26 XPW C27 C21 C 0 1 Y N N 112.221 112.678 152.391 -4.720 -1.456 0.571 C27 XPW 27 XPW C28 C22 C 0 1 Y N N 112.507 111.287 152.391 -5.112 -0.129 0.609 C28 XPW 28 XPW C29 C23 C 0 1 N N N 110.586 114.604 152.331 -5.209 -3.797 0.056 C29 XPW 29 XPW N30 N6 N 0 1 N N N 110.351 115.713 152.329 -4.892 -4.887 0.018 N30 XPW 30 XPW C31 C24 C 0 1 N N N 114.407 111.825 154.829 -0.725 1.431 0.887 C31 XPW 31 XPW O32 O2 O 0 1 N N N 114.826 110.784 156.965 0.253 0.354 -1.083 O32 XPW 32 XPW C33 C25 C 0 1 N N N 113.626 110.723 157.756 1.478 -0.186 -1.064 C33 XPW 33 XPW O34 O3 O 0 1 N N N 113.265 109.805 158.410 1.762 -1.208 -1.657 O34 XPW 34 XPW H1 H1 H 0 1 N N N 114.279 113.577 157.634 2.153 2.601 -0.113 H1 XPW 35 XPW H2 H2 H 0 1 N N N 113.250 113.456 156.167 1.709 1.640 1.332 H2 XPW 36 XPW H3 H3 H 0 1 N N N 116.532 112.565 157.465 -0.028 3.681 -0.533 H3 XPW 37 XPW H4 H4 H 0 1 N N N 116.080 113.778 156.219 0.594 2.841 -1.974 H4 XPW 38 XPW H5 H5 H 0 1 N N N 117.634 111.196 155.908 -1.783 3.504 -2.270 H5 XPW 39 XPW H6 H6 H 0 1 N N N 118.113 112.872 155.474 -1.599 1.734 -2.283 H6 XPW 40 XPW H7 H7 H 0 1 N N N 117.587 111.326 153.536 -2.426 3.415 0.126 H7 XPW 41 XPW H8 H8 H 0 1 N N N 116.700 112.888 153.562 -3.519 2.424 -0.870 H8 XPW 42 XPW H9 H9 H 0 1 N N N 116.065 109.760 155.517 -1.653 0.172 -1.425 H9 XPW 43 XPW H10 H10 H 0 1 N N N 114.781 109.170 154.408 -1.870 -0.822 0.035 H10 XPW 44 XPW H11 H11 H 0 1 N N N 116.485 109.250 153.846 -3.288 -0.139 -0.795 H11 XPW 45 XPW H12 H12 H 0 1 N N N 115.694 110.519 151.913 -2.881 0.300 2.116 H12 XPW 46 XPW H13 H13 H 0 1 N N N 115.000 112.163 152.113 -3.062 2.071 2.137 H13 XPW 47 XPW H14 H14 H 0 1 N N N 107.741 111.584 160.955 8.257 1.115 1.248 H14 XPW 48 XPW H15 H15 H 0 1 N N N 106.108 112.169 160.489 7.781 -0.081 2.478 H15 XPW 49 XPW H16 H16 H 0 1 N N N 107.056 111.152 159.351 9.375 -0.197 1.694 H16 XPW 50 XPW H17 H17 H 0 1 N N N 108.454 113.921 161.421 9.540 -0.871 -0.707 H17 XPW 51 XPW H18 H18 H 0 1 N N N 108.283 115.184 160.156 8.063 -1.235 -1.632 H18 XPW 52 XPW H19 H19 H 0 1 N N N 106.822 114.514 160.959 8.422 0.441 -1.152 H19 XPW 53 XPW H20 H20 H 0 1 N N N 106.077 113.843 158.772 7.353 -2.393 1.667 H20 XPW 54 XPW H21 H21 H 0 1 N N N 108.573 112.874 156.941 5.918 -2.027 -1.143 H21 XPW 55 XPW H22 H22 H 0 1 N N N 112.165 112.309 160.142 4.074 1.749 1.257 H22 XPW 56 XPW H23 H23 H 0 1 N N N 114.079 108.484 152.442 -5.201 3.092 1.038 H23 XPW 57 XPW H24 H24 H 0 1 N N N 109.338 110.107 152.234 -8.276 -0.473 -0.605 H24 XPW 58 XPW H25 H25 H 0 1 N N N 108.836 112.528 152.229 -7.576 -2.806 -0.680 H25 XPW 59 XPW H26 H26 H 0 1 N N N 113.026 113.396 152.437 -3.730 -1.740 0.897 H26 XPW 60 XPW H27 H27 H 0 1 N N N 114.165 112.803 154.386 -0.471 0.548 1.474 H27 XPW 61 XPW H28 H28 H 0 1 N N N 113.513 111.184 154.814 -0.661 2.317 1.517 H28 XPW 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XPW C25 C24 DOUB Y N 1 XPW C25 C26 SING Y N 2 XPW C24 C23 SING Y N 3 XPW N30 C29 TRIP N N 4 XPW C29 C26 SING N N 5 XPW C26 C27 DOUB Y N 6 XPW C23 N22 SING Y N 7 XPW C23 C28 DOUB Y N 8 XPW N22 C21 DOUB Y N 9 XPW C27 C28 SING Y N 10 XPW C28 N20 SING Y N 11 XPW C21 N20 SING Y N 12 XPW N20 C19 SING N N 13 XPW C19 C17 SING N N 14 XPW C17 C16 SING N N 15 XPW C17 C18 SING N N 16 XPW C17 C31 SING N N 17 XPW C16 C15 SING N N 18 XPW C31 C13 SING N N 19 XPW C15 C14 SING N N 20 XPW C13 C14 SING N N 21 XPW C13 C12 SING N N 22 XPW C13 O32 SING N N 23 XPW C12 N11 SING N N 24 XPW O32 C33 SING N N 25 XPW N07 C06 DOUB Y N 26 XPW N07 C08 SING Y N 27 XPW N11 C33 SING N N 28 XPW N11 C08 SING N N 29 XPW C06 C05 SING Y N 30 XPW C33 O34 DOUB N N 31 XPW C08 C09 DOUB Y N 32 XPW O04 C02 SING N N 33 XPW C05 C02 SING N N 34 XPW C05 N10 DOUB Y N 35 XPW C09 N10 SING Y N 36 XPW C02 C01 SING N N 37 XPW C02 C03 SING N N 38 XPW C12 H1 SING N N 39 XPW C12 H2 SING N N 40 XPW C14 H3 SING N N 41 XPW C14 H4 SING N N 42 XPW C15 H5 SING N N 43 XPW C15 H6 SING N N 44 XPW C16 H7 SING N N 45 XPW C16 H8 SING N N 46 XPW C18 H9 SING N N 47 XPW C18 H10 SING N N 48 XPW C18 H11 SING N N 49 XPW C19 H12 SING N N 50 XPW C19 H13 SING N N 51 XPW C01 H14 SING N N 52 XPW C01 H15 SING N N 53 XPW C01 H16 SING N N 54 XPW C03 H17 SING N N 55 XPW C03 H18 SING N N 56 XPW C03 H19 SING N N 57 XPW O04 H20 SING N N 58 XPW C06 H21 SING N N 59 XPW C09 H22 SING N N 60 XPW C21 H23 SING N N 61 XPW C24 H24 SING N N 62 XPW C25 H25 SING N N 63 XPW C27 H26 SING N N 64 XPW C31 H27 SING N N 65 XPW C31 H28 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XPW SMILES ACDLabs 12.01 "CC(C)(O)c1ncc(nc1)N1CC2(CCCC(C)(Cn3cnc4ccc(C#N)cc43)C2)OC1=O" XPW InChI InChI 1.06 "InChI=1S/C25H28N6O3/c1-23(2,33)20-11-28-21(12-27-20)31-15-25(34-22(31)32)8-4-7-24(3,13-25)14-30-16-29-18-6-5-17(10-26)9-19(18)30/h5-6,9,11-12,16,33H,4,7-8,13-15H2,1-3H3/t24-,25-/m0/s1" XPW InChIKey InChI 1.06 URCMKDJBULWNAI-DQEYMECFSA-N XPW SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)c1cnc(cn1)N2C[C@@]3(CCC[C@](C)(Cn4cnc5ccc(cc45)C#N)C3)OC2=O" XPW SMILES CACTVS 3.385 "CC(C)(O)c1cnc(cn1)N2C[C]3(CCC[C](C)(Cn4cnc5ccc(cc45)C#N)C3)OC2=O" XPW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]1(CCC[C@]2(C1)CN(C(=O)O2)c3cnc(cn3)C(C)(C)O)Cn4cnc5c4cc(cc5)C#N" XPW SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCCC2(C1)CN(C(=O)O2)c3cnc(cn3)C(C)(C)O)Cn4cnc5c4cc(cc5)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XPW "SYSTEMATIC NAME" ACDLabs 12.01 "1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile" XPW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[(5~{S},7~{S})-7-methyl-2-oxidanylidene-3-[5-(2-oxidanylpropan-2-yl)pyrazin-2-yl]-1-oxa-3-azaspiro[4.5]decan-7-yl]methyl]benzimidazole-5-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XPW "Create component" 2022-12-05 RCSB XPW "Initial release" 2023-07-12 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XPW _pdbx_chem_comp_synonyms.name GSK2798745 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #