data_XQA # _chem_comp.id XQA _chem_comp.name UDP-di-N-acetyl-alpha-bacillosamine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H30 N4 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-31 _chem_comp.pdbx_modified_date 2021-02-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 632.406 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XQA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L7Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XQA O74 O1 O 0 1 N N N -4.842 -14.545 15.697 -5.846 -4.730 0.193 O74 XQA 1 XQA C74 C1 C 0 1 N N N -5.347 -14.195 16.762 -5.134 -4.487 1.143 C74 XQA 2 XQA C84 C2 C 0 1 N N N -4.526 -13.322 17.655 -4.692 -5.600 2.059 C84 XQA 3 XQA N4A N1 N 0 1 N N N -6.582 -14.465 17.277 -4.732 -3.222 1.378 N4A XQA 4 XQA "C4'" C3 C 0 1 N N S -7.728 -15.092 16.651 -5.156 -2.141 0.485 "C4'" XQA 5 XQA "C3'" C4 C 0 1 N N S -7.511 -16.574 16.363 -5.121 -0.809 1.241 "C3'" XQA 6 XQA "O3'" O2 O 0 1 N N N -6.308 -16.885 15.611 -6.058 -0.846 2.319 "O3'" XQA 7 XQA "C5'" C5 C 0 1 N N R -9.040 -14.952 17.516 -4.205 -2.064 -0.713 "C5'" XQA 8 XQA "C6'" C6 C 0 1 N N N -9.542 -13.580 17.990 -4.279 -3.369 -1.508 "C6'" XQA 9 XQA "O5'" O3 O 0 1 N N N -10.168 -15.465 16.793 -4.586 -0.973 -1.553 "O5'" XQA 10 XQA "C1'" C7 C 0 1 N N R -10.011 -16.788 16.348 -4.527 0.304 -0.913 "C1'" XQA 11 XQA "C2'" C8 C 0 1 N N R -8.731 -17.016 15.566 -5.490 0.323 0.276 "C2'" XQA 12 XQA "N2'" N2 N 0 1 N N N -8.664 -18.421 15.190 -5.388 1.609 0.969 "N2'" XQA 13 XQA "C7'" C9 C 0 1 N N N -8.480 -18.782 13.913 -6.106 2.666 0.538 "C7'" XQA 14 XQA "C8'" C10 C 0 1 N N N -8.289 -20.256 13.626 -6.000 3.989 1.251 "C8'" XQA 15 XQA "O7'" O4 O 0 1 N N N -8.437 -17.918 13.034 -6.836 2.551 -0.423 "O7'" XQA 16 XQA "O1'" O5 O 0 1 N N N -10.001 -17.593 17.510 -3.196 0.545 -0.452 "O1'" XQA 17 XQA PB P1 P 0 1 N N N -11.401 -18.215 17.996 -2.075 1.270 -1.351 PB XQA 18 XQA O2B O6 O 0 1 N N N -10.974 -18.850 19.270 -1.730 0.350 -2.626 O2B XQA 19 XQA O1B O7 O 0 1 N N N -12.563 -17.244 17.907 -2.584 2.581 -1.812 O1B XQA 20 XQA O3A O8 O 0 1 N N N -11.738 -19.215 16.774 -0.743 1.491 -0.473 O3A XQA 21 XQA PA P2 P 0 1 N N N -11.634 -20.779 16.674 0.532 2.465 -0.601 PA XQA 22 XQA O2A O9 O 0 1 N N N -12.363 -21.276 15.443 0.937 2.564 -2.021 O2A XQA 23 XQA O1A O10 O 0 1 N N N -10.170 -21.134 16.663 0.148 3.928 -0.049 O1A XQA 24 XQA O5B O11 O 0 1 N N N -12.345 -21.391 17.971 1.752 1.869 0.264 O5B XQA 25 XQA C5B C11 C 0 1 N N N -13.685 -21.198 18.391 3.058 2.449 0.272 C5B XQA 26 XQA C4B C12 C 0 1 N N R -13.928 -22.115 19.592 3.971 1.639 1.194 C4B XQA 27 XQA C2B C13 C 0 1 N N S -13.695 -23.586 19.319 5.351 2.317 1.293 C2B XQA 28 XQA O3B O12 O 0 1 N N N -12.872 -24.225 20.308 5.636 2.675 2.647 O3B XQA 29 XQA C3B C14 C 0 1 N N R -15.104 -24.145 19.295 6.342 1.236 0.798 C3B XQA 30 XQA "O2'" O13 O 0 1 N N N -15.194 -25.497 19.708 7.523 1.221 1.602 "O2'" XQA 31 XQA C1B C15 C 0 1 N N R -15.845 -23.191 20.206 5.525 -0.066 0.991 C1B XQA 32 XQA O4B O14 O 0 1 N N N -15.297 -21.910 19.898 4.179 0.326 0.646 O4B XQA 33 XQA N1 N3 N 0 1 N N N -17.273 -23.193 19.969 6.006 -1.116 0.089 N1 XQA 34 XQA C2 C16 C 0 1 N N N -18.130 -23.630 20.987 6.572 -2.225 0.599 C2 XQA 35 XQA O2 O15 O 0 1 N N N -17.687 -24.029 22.093 6.677 -2.343 1.805 O2 XQA 36 XQA C6 C17 C 0 1 N N N -17.753 -22.761 18.773 5.871 -0.962 -1.264 C6 XQA 37 XQA C5 C18 C 0 1 N N N -19.135 -22.819 18.553 6.315 -1.929 -2.095 C5 XQA 38 XQA C4 C19 C 0 1 N N N -19.977 -23.264 19.566 6.914 -3.088 -1.545 C4 XQA 39 XQA O4 O16 O 0 1 N N N -21.240 -23.298 19.393 7.322 -3.974 -2.274 O4 XQA 40 XQA N3 N4 N 0 1 N N N -19.477 -23.696 20.739 7.023 -3.205 -0.206 N3 XQA 41 XQA H1 H1 H 0 1 N N N -3.552 -13.127 17.183 -3.754 -6.019 1.694 H1 XQA 42 XQA H2 H2 H 0 1 N N N -5.051 -12.369 17.819 -4.548 -5.207 3.065 H2 XQA 43 XQA H3 H3 H 0 1 N N N -4.372 -13.827 18.620 -5.455 -6.378 2.078 H3 XQA 44 XQA H4 H4 H 0 1 N N N -6.716 -14.189 18.229 -4.161 -3.027 2.138 H4 XQA 45 XQA H5 H5 H 0 1 N N N -7.921 -14.591 15.691 -6.169 -2.335 0.134 H5 XQA 46 XQA H6 H6 H 0 1 N N N -7.499 -17.119 17.318 -4.119 -0.639 1.635 H6 XQA 47 XQA H7 H7 H 0 1 N N N -5.741 -16.123 15.591 -6.089 -0.033 2.841 H7 XQA 48 XQA H8 H8 H 0 1 N N N -8.893 -15.571 18.414 -3.186 -1.912 -0.359 H8 XQA 49 XQA H9 H9 H 0 1 N N N -10.465 -13.709 18.574 -5.299 -3.521 -1.862 H9 XQA 50 XQA H10 H10 H 0 1 N N N -8.774 -13.106 18.618 -3.603 -3.315 -2.360 H10 XQA 51 XQA H11 H11 H 0 1 N N N -9.746 -12.943 17.117 -3.990 -4.202 -0.867 H11 XQA 52 XQA H12 H12 H 0 1 N N N -10.861 -17.070 15.709 -4.812 1.080 -1.624 H12 XQA 53 XQA H13 H13 H 0 1 N N N -8.778 -16.406 14.652 -6.511 0.179 -0.079 H13 XQA 54 XQA H14 H14 H 0 1 N N N -8.756 -19.125 15.894 -4.804 1.701 1.738 H14 XQA 55 XQA H15 H15 H 0 1 N N N -8.115 -20.401 12.550 -5.202 4.581 0.803 H15 XQA 56 XQA H16 H16 H 0 1 N N N -7.422 -20.630 14.191 -6.944 4.527 1.161 H16 XQA 57 XQA H17 H17 H 0 1 N N N -9.191 -20.808 13.929 -5.779 3.818 2.305 H17 XQA 58 XQA H18 H18 H 0 1 N N N -11.534 -18.550 19.977 -1.390 -0.527 -2.398 H18 XQA 59 XQA H19 H19 H 0 1 N N N -9.966 -21.615 15.869 -0.128 3.939 0.878 H19 XQA 60 XQA H20 H20 H 0 1 N N N -13.840 -20.149 18.682 3.464 2.442 -0.739 H20 XQA 61 XQA H21 H21 H 0 1 N N N -14.375 -21.457 17.575 2.997 3.476 0.632 H21 XQA 62 XQA H22 H22 H 0 1 N N N -13.289 -21.793 20.428 3.522 1.560 2.184 H22 XQA 63 XQA H23 H23 H 0 1 N N N -13.246 -23.700 18.321 5.391 3.197 0.651 H23 XQA 64 XQA H24 H24 H 0 1 N N N -12.001 -23.846 20.289 6.493 3.106 2.768 H24 XQA 65 XQA H25 H25 H 0 1 N N N -15.505 -24.038 18.276 6.590 1.388 -0.252 H25 XQA 66 XQA H26 H26 H 0 1 N N N -16.100 -25.781 19.669 8.022 2.049 1.584 H26 XQA 67 XQA H27 H27 H 0 1 N N N -15.636 -23.455 21.253 5.573 -0.400 2.027 H27 XQA 68 XQA H28 H28 H 0 1 N N N -17.086 -22.383 18.012 5.412 -0.071 -1.665 H28 XQA 69 XQA H29 H29 H 0 1 N N N -19.545 -22.519 17.600 6.215 -1.820 -3.164 H29 XQA 70 XQA H30 H30 H 0 1 N N N -20.092 -24.068 21.434 7.432 -3.996 0.179 H30 XQA 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XQA "O7'" "C7'" DOUB N N 1 XQA "C8'" "C7'" SING N N 2 XQA "C7'" "N2'" SING N N 3 XQA "N2'" "C2'" SING N N 4 XQA O2A PA DOUB N N 5 XQA "C2'" "C1'" SING N N 6 XQA "C2'" "C3'" SING N N 7 XQA "O3'" "C3'" SING N N 8 XQA O74 C74 DOUB N N 9 XQA "C1'" "O5'" SING N N 10 XQA "C1'" "O1'" SING N N 11 XQA "C3'" "C4'" SING N N 12 XQA "C4'" N4A SING N N 13 XQA "C4'" "C5'" SING N N 14 XQA O1A PA SING N N 15 XQA PA O3A SING N N 16 XQA PA O5B SING N N 17 XQA C74 N4A SING N N 18 XQA C74 C84 SING N N 19 XQA O3A PB SING N N 20 XQA "O5'" "C5'" SING N N 21 XQA "O1'" PB SING N N 22 XQA "C5'" "C6'" SING N N 23 XQA O1B PB DOUB N N 24 XQA O5B C5B SING N N 25 XQA PB O2B SING N N 26 XQA C5B C4B SING N N 27 XQA C5 C6 DOUB N N 28 XQA C5 C4 SING N N 29 XQA C6 N1 SING N N 30 XQA C3B C2B SING N N 31 XQA C3B "O2'" SING N N 32 XQA C3B C1B SING N N 33 XQA C2B C4B SING N N 34 XQA C2B O3B SING N N 35 XQA O4 C4 DOUB N N 36 XQA C4 N3 SING N N 37 XQA C4B O4B SING N N 38 XQA O4B C1B SING N N 39 XQA N1 C1B SING N N 40 XQA N1 C2 SING N N 41 XQA N3 C2 SING N N 42 XQA C2 O2 DOUB N N 43 XQA C84 H1 SING N N 44 XQA C84 H2 SING N N 45 XQA C84 H3 SING N N 46 XQA N4A H4 SING N N 47 XQA "C4'" H5 SING N N 48 XQA "C3'" H6 SING N N 49 XQA "O3'" H7 SING N N 50 XQA "C5'" H8 SING N N 51 XQA "C6'" H9 SING N N 52 XQA "C6'" H10 SING N N 53 XQA "C6'" H11 SING N N 54 XQA "C1'" H12 SING N N 55 XQA "C2'" H13 SING N N 56 XQA "N2'" H14 SING N N 57 XQA "C8'" H15 SING N N 58 XQA "C8'" H16 SING N N 59 XQA "C8'" H17 SING N N 60 XQA O2B H18 SING N N 61 XQA O1A H19 SING N N 62 XQA C5B H20 SING N N 63 XQA C5B H21 SING N N 64 XQA C4B H22 SING N N 65 XQA C2B H23 SING N N 66 XQA O3B H24 SING N N 67 XQA C3B H25 SING N N 68 XQA "O2'" H26 SING N N 69 XQA C1B H27 SING N N 70 XQA C6 H28 SING N N 71 XQA C5 H29 SING N N 72 XQA N3 H30 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XQA SMILES ACDLabs 12.01 "O=C(NC3C(C)OC(OP(O)(=O)OP(OCC1OC(C(C1O)O)N2C(=O)NC(C=C2)=O)(=O)O)C(C3O)NC(C)=O)C" XQA InChI InChI 1.03 "InChI=1S/C19H30N4O16P2/c1-7-12(20-8(2)24)15(28)13(21-9(3)25)18(36-7)38-41(33,34)39-40(31,32)35-6-10-14(27)16(29)17(37-10)23-5-4-11(26)22-19(23)30/h4-5,7,10,12-18,27-29H,6H2,1-3H3,(H,20,24)(H,21,25)(H,31,32)(H,33,34)(H,22,26,30)/t7-,10-,12-,13-,14-,15+,16-,17-,18-/m1/s1" XQA InChIKey InChI 1.03 KCAODEOZHCZEBC-TUHJILAWSA-N XQA SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](NC(C)=O)[C@@H](O)[C@@H]1NC(C)=O" XQA SMILES CACTVS 3.385 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](NC(C)=O)[CH](O)[CH]1NC(C)=O" XQA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)NC(=O)C" XQA SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)NC(=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XQA "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S,5S,6R)-3,5-bis(acetylamino)-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" XQA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{S},5~{S},6~{R})-3,5-diacetamido-6-methyl-4-oxidanyl-oxan-2-yl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XQA "Create component" 2020-12-31 RCSB XQA "Initial release" 2021-03-03 RCSB ##