data_XQQ # _chem_comp.id XQQ _chem_comp.name "4-[(4S)-8-amino-3-{(2S)-1-[(2E)-but-2-enoyl]pyrrolidin-2-yl}imidazo[1,5-a]pyrazin-1-yl]-N-(pyridin-2-yl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-{(4S)-8-amino-3-[(2S)-1-(but-2-ynoyl)pyrrolidin-2-yl]imidazo[1,5-a]pyrazin-1-yl}-N-(pyridin-2-yl)benzamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.522 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XQQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FD9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XQQ N1 N1 N 0 1 N N N N N N 19.709 -3.324 -3.982 4.801 -1.033 -0.743 N1 XQQ 1 XQQ N3 N2 N 0 1 Y N N N N N 14.439 0.535 -3.099 1.899 4.110 1.417 N3 XQQ 2 XQQ C4 C1 C 0 1 N N N N N N 21.064 -2.962 -3.532 4.985 -1.761 -2.011 C4 XQQ 3 XQQ C5 C2 C 0 1 Y N N N N N 17.901 -1.612 -3.901 3.250 0.839 -0.563 C5 XQQ 4 XQQ C6 C3 C 0 1 Y N N N N N 16.322 -0.093 -4.429 1.643 2.021 0.352 C6 XQQ 5 XQQ C7 C4 C 0 1 N N N N N N 19.479 -4.189 -4.988 4.812 -1.583 0.488 C7 XQQ 6 XQQ C8 C5 C 0 1 Y N N N N N 17.272 -0.180 -5.458 1.116 0.848 -0.178 C8 XQQ 7 XQQ C10 C6 C 0 1 Y N N N N N 15.150 0.685 -4.246 1.102 3.129 1.038 C10 XQQ 8 XQQ C13 C7 C 0 1 N N N N N N 18.222 -4.442 -5.402 5.023 -3.030 0.644 C13 XQQ 9 XQQ C15 C8 C 0 1 Y N N N N N 17.533 1.911 -6.799 -1.308 1.351 -0.451 C15 XQQ 10 XQQ C17 C9 C 0 1 Y N N N N N 17.579 2.575 -8.004 -2.616 0.963 -0.430 C17 XQQ 11 XQQ C20 C10 C 0 1 N N N N N N 17.486 2.632 -10.498 -4.364 -0.775 -0.079 C20 XQQ 12 XQQ C21 C11 C 0 1 N N N N N N 16.557 -5.765 -6.715 5.249 -5.056 2.019 C21 XQQ 13 XQQ C22 C12 C 0 1 Y N N N N N 16.677 2.539 -12.852 -6.673 -0.253 -0.253 C22 XQQ 14 XQQ C24 C13 C 0 1 Y N N N N N 17.262 3.898 -14.710 -8.993 0.322 -0.329 C24 XQQ 15 XQQ C26 C14 C 0 1 Y N N N N N 16.353 3.193 -15.469 -9.279 -0.995 0.006 C26 XQQ 16 XQQ C1 C15 C 0 1 N N S N N N 18.672 -2.664 -3.165 4.608 0.394 -1.042 C1 XQQ 17 XQQ C11 C16 C 0 1 Y N N N N N 17.328 0.536 -6.751 -0.300 0.430 -0.149 C11 XQQ 18 XQQ C12 C17 C 0 1 Y N N N N N 14.846 -0.337 -2.175 3.213 4.073 1.165 C12 XQQ 19 XQQ C14 C18 C 0 1 Y N N N N N 17.188 -0.154 -7.950 -0.633 -0.887 0.181 C14 XQQ 20 XQQ C16 C19 C 0 1 Y N N N N N 17.228 0.512 -9.154 -1.942 -1.275 0.207 C16 XQQ 21 XQQ C18 C20 C 0 1 Y N N N N N 17.437 1.886 -9.203 -2.950 -0.356 -0.106 C18 XQQ 22 XQQ C19 C21 C 0 1 N N N N N N 17.860 -5.554 -6.010 5.034 -3.573 1.858 C19 XQQ 23 XQQ C2 C22 C 0 1 N N N N N N 19.503 -2.146 -1.979 4.704 0.558 -2.573 C2 XQQ 24 XQQ C23 C23 C 0 1 Y N N N N N 17.439 3.580 -13.385 -7.667 0.697 -0.459 C23 XQQ 25 XQQ C25 C24 C 0 1 Y N N N N N 15.648 2.184 -14.864 -8.241 -1.884 0.201 C25 XQQ 26 XQQ C3 C25 C 0 1 N N N N N N 20.810 -1.784 -2.622 5.509 -0.696 -3.007 C3 XQQ 27 XQQ C9 C26 C 0 1 Y N N N N N 15.968 -1.113 -2.306 3.778 3.039 0.514 C9 XQQ 28 XQQ N2 N3 N 0 1 Y N N N N N 18.237 -1.138 -5.133 2.139 0.168 -0.722 N2 XQQ 29 XQQ N4 N4 N 0 1 N N N N N N 14.704 1.563 -5.136 -0.255 3.187 1.310 N4 XQQ 30 XQQ N5 N5 N 0 1 N N N N N N 16.752 2.102 -11.520 -5.334 0.110 -0.381 N5 XQQ 31 XQQ N6 N6 N 0 1 Y N N N N N 15.792 1.843 -13.573 -6.986 -1.498 0.070 N6 XQQ 32 XQQ N7 N7 N 0 1 Y N N N N N 16.732 -1.002 -3.458 2.998 1.987 0.093 N7 XQQ 33 XQQ O1 O1 O 0 1 N N N N N N 20.435 -4.768 -5.489 4.649 -0.882 1.469 O1 XQQ 34 XQQ O2 O2 O 0 1 N N N N N N 18.122 3.676 -10.593 -4.654 -1.918 0.217 O2 XQQ 35 XQQ H10 H1 H 0 1 N N N N N N 21.535 -3.792 -2.984 5.719 -2.558 -1.888 H10 XQQ 36 XQQ H9 H2 H 0 1 N N N N N N 21.701 -2.676 -4.382 4.035 -2.169 -2.356 H9 XQQ 37 XQQ H13 H3 H 0 1 N N N N N N 17.467 -3.690 -5.225 5.168 -3.652 -0.227 H13 XQQ 38 XQQ H15 H4 H 0 1 N N N N N N 17.658 2.464 -5.880 -1.050 2.368 -0.706 H15 XQQ 39 XQQ H17 H5 H 0 1 N N N N N N 17.727 3.645 -8.018 -3.395 1.675 -0.663 H17 XQQ 40 XQQ H20 H6 H 0 1 N N N N N N 16.524 -6.784 -7.129 5.227 -5.314 3.078 H20 XQQ 41 XQQ H21 H7 H 0 1 N N N N N N 15.729 -5.632 -6.003 4.460 -5.596 1.496 H21 XQQ 42 XQQ H19 H8 H 0 1 N N N N N N 16.459 -5.034 -7.531 6.217 -5.330 1.599 H19 XQQ 43 XQQ H23 H9 H 0 1 N N N N N N 17.834 4.699 -15.156 -9.787 1.038 -0.483 H23 XQQ 44 XQQ H25 H10 H 0 1 N N N N N N 16.200 3.429 -16.512 -10.304 -1.319 0.116 H25 XQQ 45 XQQ H4 H11 H 0 1 N N N N N N 17.970 -3.423 -2.791 5.384 0.983 -0.554 H4 XQQ 46 XQQ H12 H12 H 0 1 N N N N N N 14.259 -0.437 -1.274 3.835 4.894 1.490 H12 XQQ 47 XQQ H14 H13 H 0 1 N N N N N N 17.046 -1.225 -7.937 0.145 -1.599 0.415 H14 XQQ 48 XQQ H16 H14 H 0 1 N N N N N N 17.095 -0.040 -10.073 -2.199 -2.293 0.462 H16 XQQ 49 XQQ H18 H15 H 0 1 N N N N N N 18.559 -6.378 -5.998 4.889 -2.951 2.729 H18 XQQ 50 XQQ H5 H16 H 0 1 N N N N N N 19.031 -1.266 -1.519 3.712 0.555 -3.024 H5 XQQ 51 XQQ H6 H17 H 0 1 N N N N N N 19.639 -2.929 -1.218 5.241 1.472 -2.830 H6 XQQ 52 XQQ H22 H18 H 0 1 N N N N N N 18.147 4.120 -12.774 -7.409 1.713 -0.718 H22 XQQ 53 XQQ H24 H19 H 0 1 N N N N N N 14.936 1.632 -15.460 -8.459 -2.909 0.462 H24 XQQ 54 XQQ H8 H20 H 0 1 N N N N N N 21.608 -1.682 -1.871 6.579 -0.536 -2.881 H8 XQQ 55 XQQ H7 H21 H 0 1 N N N N N N 20.725 -0.849 -3.196 5.274 -0.974 -4.035 H7 XQQ 56 XQQ H11 H22 H 0 1 N N N N N N 16.253 -1.801 -1.524 4.841 3.034 0.323 H11 XQQ 57 XQQ H1 H23 H 0 1 N N N N N N 13.869 1.992 -4.792 -0.792 2.380 1.271 H1 XQQ 58 XQQ H2 H24 H 0 1 N N N N N N 15.400 2.264 -5.290 -0.668 4.034 1.541 H2 XQQ 59 XQQ H3 H25 H 0 1 N N N N N N 16.198 1.302 -11.291 -5.100 1.000 -0.687 H3 XQQ 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XQQ C26 C25 DOUB Y N 1 XQQ C26 C24 SING Y N 2 XQQ C25 N6 SING Y N 3 XQQ C24 C23 DOUB Y N 4 XQQ N6 C22 DOUB Y N 5 XQQ C23 C22 SING Y N 6 XQQ C22 N5 SING N N 7 XQQ N5 C20 SING N N 8 XQQ O2 C20 DOUB N N 9 XQQ C20 C18 SING N N 10 XQQ C18 C16 DOUB Y N 11 XQQ C18 C17 SING Y N 12 XQQ C16 C14 SING Y N 13 XQQ C17 C15 DOUB Y N 14 XQQ C14 C11 DOUB Y N 15 XQQ C15 C11 SING Y N 16 XQQ C11 C8 SING N N 17 XQQ C21 C19 SING N N 18 XQQ C19 C13 DOUB N E 19 XQQ O1 C7 DOUB N N 20 XQQ C8 N2 SING Y N 21 XQQ C8 C6 DOUB Y N 22 XQQ C13 C7 SING N N 23 XQQ N4 C10 SING N N 24 XQQ N2 C5 DOUB Y N 25 XQQ C7 N1 SING N N 26 XQQ C6 C10 SING Y N 27 XQQ C6 N7 SING Y N 28 XQQ C10 N3 DOUB Y N 29 XQQ N1 C4 SING N N 30 XQQ N1 C1 SING N N 31 XQQ C5 N7 SING Y N 32 XQQ C5 C1 SING N N 33 XQQ C4 C3 SING N N 34 XQQ N7 C9 SING Y N 35 XQQ C1 C2 SING N N 36 XQQ N3 C12 SING Y N 37 XQQ C3 C2 SING N N 38 XQQ C9 C12 DOUB Y N 39 XQQ C4 H10 SING N N 40 XQQ C4 H9 SING N N 41 XQQ C13 H13 SING N N 42 XQQ C15 H15 SING N N 43 XQQ C17 H17 SING N N 44 XQQ C21 H20 SING N N 45 XQQ C21 H21 SING N N 46 XQQ C21 H19 SING N N 47 XQQ C24 H23 SING N N 48 XQQ C26 H25 SING N N 49 XQQ C1 H4 SING N N 50 XQQ C12 H12 SING N N 51 XQQ C14 H14 SING N N 52 XQQ C16 H16 SING N N 53 XQQ C19 H18 SING N N 54 XQQ C2 H5 SING N N 55 XQQ C2 H6 SING N N 56 XQQ C23 H22 SING N N 57 XQQ C25 H24 SING N N 58 XQQ C3 H8 SING N N 59 XQQ C3 H7 SING N N 60 XQQ C9 H11 SING N N 61 XQQ N4 H1 SING N N 62 XQQ N4 H2 SING N N 63 XQQ N5 H3 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XQQ SMILES ACDLabs 12.01 "O=C(\C=C\C)N1CCCC1c1nc(c2ccc(cc2)C(=O)Nc2ccccn2)c2n1ccnc2N" XQQ InChI InChI 1.06 "InChI=1S/C26H25N7O2/c1-2-6-21(34)32-15-5-7-19(32)25-31-22(23-24(27)29-14-16-33(23)25)17-9-11-18(12-10-17)26(35)30-20-8-3-4-13-28-20/h2-4,6,8-14,16,19H,5,7,15H2,1H3,(H2,27,29)(H,28,30,35)/b6-2+/t19-/m0/s1" XQQ InChIKey InChI 1.06 VSFINVOSLLRTIP-JYFUDLLOSA-N XQQ SMILES_CANONICAL CACTVS 3.385 "C\C=C\C(=O)N1CCC[C@H]1c2nc(c3ccc(cc3)C(=O)Nc4ccccn4)c5n2ccnc5N" XQQ SMILES CACTVS 3.385 "CC=CC(=O)N1CCC[CH]1c2nc(c3ccc(cc3)C(=O)Nc4ccccn4)c5n2ccnc5N" XQQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C=C/C(=O)N1CCC[C@H]1c2nc(c3n2ccnc3N)c4ccc(cc4)C(=O)Nc5ccccn5" XQQ SMILES "OpenEye OEToolkits" 2.0.7 "CC=CC(=O)N1CCCC1c2nc(c3n2ccnc3N)c4ccc(cc4)C(=O)Nc5ccccn5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XQQ "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(4S)-8-amino-3-{(2S)-1-[(2E)-but-2-enoyl]pyrrolidin-2-yl}imidazo[1,5-a]pyrazin-1-yl]-N-(pyridin-2-yl)benzamide" XQQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[8-azanyl-3-[(2~{S})-1-[(~{E})-but-2-enoyl]pyrrolidin-2-yl]imidazo[1,5-a]pyrazin-1-yl]-~{N}-pyridin-2-yl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XQQ "Create component" 2022-12-05 RCSB XQQ "Initial release" 2023-07-05 RCSB XQQ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XQQ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #