data_XQS # _chem_comp.id XQS _chem_comp.name "sibrafiban (active form)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H24 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "({1-[N-(4-carbamimidoylbenzene-1-carbonyl)-L-alanyl]piperidin-4-yl}oxy)acetic acid; Ro-44-3888" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-04 _chem_comp.pdbx_modified_date 2022-06-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.407 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XQS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L8P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XQS C10 C1 C 0 1 N N N 54.708 112.351 71.623 -4.552 0.325 -0.003 C10 XQS 1 XQS C11 C2 C 0 1 N N N 55.385 111.523 72.730 -3.499 0.387 1.106 C11 XQS 2 XQS C12 C3 C 0 1 N N N 53.515 111.574 71.123 -3.862 0.136 -1.355 C12 XQS 3 XQS C13 C4 C 0 1 N N N 54.378 111.216 73.824 -2.576 1.585 0.862 C13 XQS 4 XQS C14 C5 C 0 1 N N N 52.572 111.218 72.223 -2.943 1.331 -1.627 C14 XQS 5 XQS C15 C6 C 0 1 N N N 52.592 109.561 74.019 -0.688 1.535 -0.696 C15 XQS 6 XQS C16 C7 C 0 1 N N S 51.293 108.963 73.533 0.251 1.575 0.482 C16 XQS 7 XQS C17 C8 C 0 1 N N N 53.831 114.550 71.227 -6.762 -0.570 -0.250 C17 XQS 8 XQS C18 C9 C 0 1 N N N 50.148 109.780 74.087 0.376 3.015 0.985 C18 XQS 9 XQS C19 C10 C 0 1 N N N 51.948 106.589 73.432 2.405 0.555 0.988 C19 XQS 10 XQS C20 C11 C 0 1 N N N 54.944 115.068 70.338 -7.601 -1.783 0.058 C20 XQS 11 XQS C22 C12 C 0 1 Y N N 50.264 104.911 74.026 4.127 0.141 -0.763 C22 XQS 12 XQS C23 C13 C 0 1 Y N N 52.540 104.157 73.922 4.602 -0.488 1.523 C23 XQS 13 XQS C24 C14 C 0 1 Y N N 49.849 103.646 74.363 5.367 -0.321 -1.147 C24 XQS 14 XQS C26 C15 C 0 1 Y N N 50.775 102.634 74.484 6.230 -0.874 -0.200 C26 XQS 15 XQS C27 C16 C 0 1 N N N 50.229 101.277 74.836 7.563 -1.370 -0.614 C27 XQS 16 XQS O01 O1 O 0 1 N N N 54.303 113.574 72.136 -5.435 -0.773 0.239 O01 XQS 17 XQS O02 O2 O 0 1 N N N 53.118 109.077 74.999 -0.246 1.546 -1.825 O02 XQS 18 XQS O03 O3 O 0 1 N N N 54.655 115.840 69.384 -7.113 -2.725 0.637 O03 XQS 19 XQS O04 O4 O 0 1 N N N 52.895 106.832 72.714 2.065 0.485 2.153 O04 XQS 20 XQS O05 O5 O 0 1 N N N 56.146 114.741 70.550 -8.891 -1.818 -0.310 O05 XQS 21 XQS N06 N1 N 0 1 N N N 53.188 110.674 73.330 -2.020 1.485 -0.494 N06 XQS 22 XQS N07 N2 N 0 1 N N N 51.093 107.614 73.902 1.569 1.085 0.073 N07 XQS 23 XQS N08 N3 N 0 1 N N N 50.785 100.488 75.875 8.416 -1.916 0.320 N08 XQS 24 XQS N09 N4 N 0 1 N N N 49.203 100.877 74.140 7.930 -1.289 -1.861 N09 XQS 25 XQS C21 C17 C 0 1 Y N N 51.604 105.172 73.820 3.736 0.060 0.575 C21 XQS 26 XQS C25 C18 C 0 1 Y N N 52.121 102.877 74.257 5.838 -0.960 1.136 C25 XQS 27 XQS H101 H1 H 0 0 N N N 55.421 112.488 70.797 -5.123 1.254 -0.013 H101 XQS 28 XQS H111 H2 H 0 0 N N N 55.762 110.581 72.304 -3.993 0.498 2.071 H111 XQS 29 XQS H112 H3 H 0 0 N N N 56.223 112.095 73.154 -2.912 -0.532 1.101 H112 XQS 30 XQS H121 H4 H 0 0 N N N 52.980 112.185 70.382 -3.271 -0.780 -1.337 H121 XQS 31 XQS H122 H5 H 0 0 N N N 53.870 110.648 70.647 -4.614 0.069 -2.141 H122 XQS 32 XQS H131 H6 H 0 0 N N N 54.828 110.496 74.524 -3.145 2.510 0.956 H131 XQS 33 XQS H132 H7 H 0 0 N N N 54.144 112.149 74.358 -1.767 1.578 1.593 H132 XQS 34 XQS H141 H8 H 0 0 N N N 52.042 112.130 72.534 -2.375 1.155 -2.540 H141 XQS 35 XQS H142 H9 H 0 0 N N N 51.847 110.487 71.835 -3.542 2.235 -1.735 H142 XQS 36 XQS H161 H10 H 0 0 N N N 51.270 109.047 72.436 -0.140 0.945 1.281 H161 XQS 37 XQS H171 H11 H 0 0 N N N 53.407 115.391 71.795 -6.732 -0.413 -1.328 H171 XQS 38 XQS H172 H12 H 0 0 N N N 53.049 114.102 70.596 -7.197 0.305 0.233 H172 XQS 39 XQS H182 H13 H 0 0 N N N 50.283 110.836 73.811 0.724 3.654 0.174 H182 XQS 40 XQS H181 H14 H 0 0 N N N 49.199 109.411 73.670 -0.596 3.365 1.332 H181 XQS 41 XQS H183 H15 H 0 0 N N N 50.128 109.687 75.183 1.090 3.052 1.808 H183 XQS 42 XQS H221 H16 H 0 0 N N N 49.539 105.705 73.922 3.459 0.569 -1.495 H221 XQS 43 XQS H231 H17 H 0 0 N N N 53.586 104.359 73.743 4.299 -0.555 2.557 H231 XQS 44 XQS H241 H18 H 0 0 N N N 48.801 103.446 74.532 5.671 -0.255 -2.181 H241 XQS 45 XQS H1 H19 H 0 1 N N N 56.706 115.159 69.907 -9.389 -2.618 -0.091 H1 XQS 46 XQS H071 H20 H 0 0 N N N 50.332 107.379 74.507 1.840 1.140 -0.857 H071 XQS 47 XQS H081 H21 H 0 0 N N N 51.565 100.830 76.400 8.143 -1.975 1.249 H081 XQS 48 XQS H091 H23 H 0 0 N N N 48.881 99.976 74.431 8.802 -1.614 -2.132 H091 XQS 49 XQS H251 H24 H 0 0 N N N 52.839 102.075 74.340 6.508 -1.383 1.869 H251 XQS 50 XQS H082 H25 H 0 0 N N N 50.397 99.590 76.083 9.289 -2.240 0.049 H082 XQS 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XQS O03 C20 DOUB N N 1 XQS C20 O05 SING N N 2 XQS C20 C17 SING N N 3 XQS C12 C10 SING N N 4 XQS C12 C14 SING N N 5 XQS C17 O01 SING N N 6 XQS C10 O01 SING N N 7 XQS C10 C11 SING N N 8 XQS C14 N06 SING N N 9 XQS O04 C19 DOUB N N 10 XQS C11 C13 SING N N 11 XQS N06 C13 SING N N 12 XQS N06 C15 SING N N 13 XQS C19 C21 SING N N 14 XQS C19 N07 SING N N 15 XQS C16 N07 SING N N 16 XQS C16 C15 SING N N 17 XQS C16 C18 SING N N 18 XQS C21 C23 DOUB Y N 19 XQS C21 C22 SING Y N 20 XQS C23 C25 SING Y N 21 XQS C15 O02 DOUB N N 22 XQS C22 C24 DOUB Y N 23 XQS N09 C27 DOUB N N 24 XQS C25 C26 DOUB Y N 25 XQS C24 C26 SING Y N 26 XQS C26 C27 SING N N 27 XQS C27 N08 SING N N 28 XQS C10 H101 SING N N 29 XQS C11 H111 SING N N 30 XQS C11 H112 SING N N 31 XQS C12 H121 SING N N 32 XQS C12 H122 SING N N 33 XQS C13 H131 SING N N 34 XQS C13 H132 SING N N 35 XQS C14 H141 SING N N 36 XQS C14 H142 SING N N 37 XQS C16 H161 SING N N 38 XQS C17 H171 SING N N 39 XQS C17 H172 SING N N 40 XQS C18 H182 SING N N 41 XQS C18 H181 SING N N 42 XQS C18 H183 SING N N 43 XQS C22 H221 SING N N 44 XQS C23 H231 SING N N 45 XQS C24 H241 SING N N 46 XQS O05 H1 SING N N 47 XQS N07 H071 SING N N 48 XQS N08 H081 SING N N 49 XQS N09 H091 SING N N 50 XQS C25 H251 SING N N 51 XQS N08 H082 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XQS SMILES ACDLabs 12.01 "C1(OCC(O)=O)CCN(CC1)C(=O)C(NC(c2ccc(/C(N)=N)cc2)=O)C" XQS InChI InChI 1.03 "InChI=1S/C18H24N4O5/c1-11(21-17(25)13-4-2-12(3-5-13)16(19)20)18(26)22-8-6-14(7-9-22)27-10-15(23)24/h2-5,11,14H,6-10H2,1H3,(H3,19,20)(H,21,25)(H,23,24)/t11-/m0/s1" XQS InChIKey InChI 1.03 BHOGTSLQMNCJHA-NSHDSACASA-N XQS SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)c1ccc(cc1)C(N)=N)C(=O)N2CCC(CC2)OCC(O)=O" XQS SMILES CACTVS 3.385 "C[CH](NC(=O)c1ccc(cc1)C(N)=N)C(=O)N2CCC(CC2)OCC(O)=O" XQS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/c1ccc(cc1)C(=O)N[C@@H](C)C(=O)N2CCC(CC2)OCC(=O)O)\N" XQS SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)N1CCC(CC1)OCC(=O)O)NC(=O)c2ccc(cc2)C(=N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XQS "SYSTEMATIC NAME" ACDLabs 12.01 "({1-[N-(4-carbamimidoylbenzene-1-carbonyl)-L-alanyl]piperidin-4-yl}oxy)acetic acid" XQS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[1-[(2~{S})-2-[(4-carbamimidoylphenyl)carbonylamino]propanoyl]piperidin-4-yl]oxyethanoic acid" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 XQS "({1-[N-(4-carbamimidoylbenzene-1-carbonyl)-L-alanyl]piperidin-4-yl}oxy)acetic acid" PDB ? 2 XQS Ro-44-3888 PUBCHEM ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XQS "Create component" 2021-01-04 RCSB XQS "Initial release" 2022-06-15 RCSB #