data_XR2 # _chem_comp.id XR2 _chem_comp.name "1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C34 H38 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 4 _chem_comp.pdbx_initial_date 2004-08-26 _chem_comp.pdbx_modified_date 2011-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 590.718 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XR2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XR2 C1 C1 C 0 1 Y N N -0.019 5.181 2.156 7.773 0.364 1.599 C1 XR2 1 XR2 C2 C2 C 0 1 Y N N -0.997 4.797 3.062 7.624 -0.304 0.445 C2 XR2 2 XR2 C3 C3 C 0 1 Y N N -2.342 4.915 2.747 8.732 -0.711 -0.382 C3 XR2 3 XR2 C4 C4 C 0 1 Y N N -2.704 5.430 1.503 10.006 -0.459 -0.073 C4 XR2 4 XR2 C12 C12 C 0 1 Y N N -1.721 5.823 0.586 10.312 0.272 1.176 C12 XR2 5 XR2 C11 C11 C 0 1 Y N N -0.372 5.698 0.918 9.150 0.701 2.048 C11 XR2 6 XR2 N5 N5 N 0 1 Y N N -2.154 6.310 -0.590 11.537 0.537 1.512 N5 XR2 7 XR2 N10 N10 N 1 1 Y N N 0.568 6.097 -0.004 9.380 1.338 3.143 N10 XR2 8 XR2 C13 C13 C 0 1 Y N N -1.210 6.687 -1.469 11.751 1.234 2.713 C13 XR2 9 XR2 C14 C14 C 0 1 Y N N 0.154 6.598 -1.218 10.690 1.637 3.532 C14 XR2 10 XR2 C6 C6 C 0 1 Y N N -1.656 7.195 -2.693 13.056 1.537 3.111 C6 XR2 11 XR2 C7 C7 C 0 1 Y N N -0.743 7.615 -3.660 13.289 2.230 4.302 C7 XR2 12 XR2 C8 C8 C 0 1 Y N N 0.624 7.519 -3.404 12.218 2.624 5.106 C8 XR2 13 XR2 C9 C9 C 0 1 Y N N 1.078 7.027 -2.218 10.911 2.329 4.724 C9 XR2 14 XR2 C9A C9A C 0 1 N N N 2.584 6.951 -1.963 9.801 2.772 5.623 C9A XR2 15 XR2 C C C 0 1 N N N 1.422 4.970 2.568 6.538 0.702 2.316 C XR2 16 XR2 O O O 0 1 N N N 2.325 5.632 2.062 6.059 -0.070 3.145 O XR2 17 XR2 N N N 0 1 N N N 1.673 3.872 3.246 6.021 1.930 1.947 N XR2 18 XR2 CA CA C 0 1 N N N 2.910 3.065 3.005 4.809 2.481 2.512 CA XR2 19 XR2 CB CB C 0 1 N N N 2.895 2.722 1.509 5.132 3.309 3.742 CB XR2 20 XR2 NG NG N 1 1 N N N 1.737 1.790 1.316 6.081 4.390 3.383 NG XR2 21 XR2 CD CD C 0 1 N N N 2.291 0.503 0.789 6.425 5.304 4.506 CD XR2 22 XR2 "N'" "N'" N 0 1 N N N ? ? ? 10.609 5.177 1.580 "N'" XR2 23 XR2 "C'" "C'" C 0 1 N N N ? ? ? 10.633 5.482 0.252 "C'" XR2 24 XR2 "O'" "O'" O 0 1 N N N ? ? ? 10.862 6.568 -0.268 "O'" XR2 25 XR2 "C1'" "C1'" C 0 1 Y N N ? ? ? 10.340 4.299 -0.577 "C1'" XR2 26 XR2 "C2'" "C2'" C 0 1 Y N N ? ? ? 11.396 3.561 -0.950 "C2'" XR2 27 XR2 "C3'" "C3'" C 0 1 Y N N ? ? ? 11.285 2.374 -1.760 "C3'" XR2 28 XR2 "C4'" "C4'" C 0 1 Y N N ? ? ? 10.119 1.903 -2.211 "C4'" XR2 29 XR2 CCX "C12'" C 0 1 Y N N ? ? ? 8.874 2.624 -1.873 CCX XR2 30 XR2 "N5'" "N5'" N 0 1 Y N N ? ? ? 7.721 2.200 -2.293 "N5'" XR2 31 XR2 CDX "C13'" C 0 1 Y N N ? ? ? 6.581 2.937 -1.933 CDX XR2 32 XR2 CEX "C14'" C 0 1 Y N N ? ? ? 6.666 4.093 -1.148 CEX XR2 33 XR2 NAX "N10'" N 1 1 Y N N ? ? ? 7.922 4.526 -0.710 NAX XR2 34 XR2 CBX "C11'" C 0 1 Y N N ? ? ? 8.986 3.873 -1.023 CBX XR2 35 XR2 "C9'" "C9'" C 0 1 Y N N ? ? ? 5.528 4.820 -0.795 "C9'" XR2 36 XR2 "C8'" "C8'" C 0 1 Y N N ? ? ? 4.279 4.384 -1.235 "C8'" XR2 37 XR2 "C7'" "C7'" C 0 1 Y N N ? ? ? 4.175 3.233 -2.017 "C7'" XR2 38 XR2 "C6'" "C6'" C 0 1 Y N N ? ? ? 5.321 2.513 -2.365 "C6'" XR2 39 XR2 C9X "C9A'" C 0 1 N N N ? ? ? 5.584 6.060 0.039 C9X XR2 40 XR2 "CA'" "CA'" C 0 1 N N N ? ? ? 10.876 6.198 2.618 "CA'" XR2 41 XR2 "CB'" "CB'" C 0 1 N N N ? ? ? 9.584 6.875 3.033 "CB'" XR2 42 XR2 "NG'" "NG'" N 1 1 N N N ? ? ? 8.620 5.856 3.532 "NG'" XR2 43 XR2 "CD'" "CD'" C 0 1 N N N ? ? ? 7.338 6.415 4.025 "CD'" XR2 44 XR2 H2 H2 H 0 1 N N N -0.707 4.401 4.024 6.639 -0.575 0.074 H2 XR2 45 XR2 H3 H3 H 0 1 N N N -3.099 4.612 3.455 8.494 -1.246 -1.295 H3 XR2 46 XR2 H4 H4 H 0 1 N N N -3.748 5.526 1.245 10.823 -0.774 -0.710 H4 XR2 47 XR2 H10 H10 H 0 1 N N N 1.543 6.024 0.206 8.621 1.641 3.754 H10 XR2 48 XR2 H6 H6 H 0 1 N N N -2.716 7.263 -2.891 13.901 1.238 2.497 H6 XR2 49 XR2 H7 H7 H 0 1 N N N -1.093 8.012 -4.601 14.306 2.461 4.603 H7 XR2 50 XR2 H8 H8 H 0 1 N N N 1.331 7.839 -4.155 12.417 3.162 6.030 H8 XR2 51 XR2 H91 H91 H 0 1 N N N 3.119 6.933 -2.924 9.617 3.845 5.496 H91 XR2 52 XR2 H92 H92 H 0 1 N N N 2.902 7.830 -1.383 8.874 2.229 5.402 H92 XR2 53 XR2 H93 H93 H 0 1 N N N 2.814 6.036 -1.398 10.043 2.579 6.674 H93 XR2 54 XR2 HN HN H 0 1 N N N 1.021 3.568 3.940 6.517 2.473 1.246 HN XR2 55 XR2 HA1 HA1 H 0 1 N N N 3.809 3.643 3.264 4.126 1.659 2.753 HA1 XR2 56 XR2 HA2 HA2 H 0 1 N N N 2.930 2.159 3.628 4.332 3.108 1.752 HA2 XR2 57 XR2 HB1 HB1 H 0 1 N N N 2.768 3.631 0.903 5.621 2.705 4.511 HB1 XR2 58 XR2 HB2 HB2 H 0 1 N N N 3.842 2.261 1.191 4.245 3.792 4.163 HB2 XR2 59 XR2 HG1 HG1 H 0 1 N N N 1.268 1.635 2.186 6.948 3.973 3.013 HG1 XR2 60 XR2 HG2 HG2 H 0 1 N N N 1.072 2.178 0.678 5.688 4.945 2.608 HG2 XR2 61 XR2 HD1 HD1 H 0 1 N N N 3.093 0.558 0.038 6.882 4.692 5.291 HD1 XR2 62 XR2 HD2 HD2 H 0 1 N N N 2.851 -0.194 1.430 5.478 5.711 4.871 HD2 XR2 63 XR2 "HN'" "HN'" H 0 1 N N N ? ? ? 10.406 4.238 1.860 "HN'" XR2 64 XR2 "H2'" "H2'" H 0 1 N N N ? ? ? 12.406 3.830 -0.651 "H2'" XR2 65 XR2 "H3'" "H3'" H 0 1 N N N ? ? ? 12.207 1.854 -2.000 "H3'" XR2 66 XR2 "H4'" "H4'" H 0 1 N N N ? ? ? 10.060 1.008 -2.819 "H4'" XR2 67 XR2 "H10'" "H10'" H 0 0 N N N ? ? ? 7.962 5.371 -0.139 "H10'" XR2 68 XR2 "H8'" "H8'" H 0 1 N N N ? ? ? 3.378 4.933 -0.973 "H8'" XR2 69 XR2 "H7'" "H7'" H 0 1 N N N ? ? ? 3.201 2.896 -2.358 "H7'" XR2 70 XR2 "H6'" "H6'" H 0 1 N N N ? ? ? 5.222 1.619 -2.975 "H6'" XR2 71 XR2 "H91'" "H91'" H 0 0 N N N ? ? ? 4.903 5.972 0.893 "H91'" XR2 72 XR2 "H92'" "H92'" H 0 0 N N N ? ? ? 6.598 6.237 0.416 "H92'" XR2 73 XR2 "H93'" "H93'" H 0 0 N N N ? ? ? 5.300 6.943 -0.546 "H93'" XR2 74 XR2 "HA1'" "HA1'" H 0 0 N N N ? ? ? 11.596 6.922 2.224 "HA1'" XR2 75 XR2 "HA2'" "HA2'" H 0 0 N N N ? ? ? 11.331 5.698 3.479 "HA2'" XR2 76 XR2 "HB1'" "HB1'" H 0 0 N N N ? ? ? 9.103 7.370 2.185 "HB1'" XR2 77 XR2 "HB2'" "HB2'" H 0 0 N N N ? ? ? 9.732 7.594 3.844 "HB2'" XR2 78 XR2 "HG1'" "HG1'" H 0 0 N N N ? ? ? 8.429 5.179 2.779 "HG1'" XR2 79 XR2 "HG2'" "HG2'" H 0 0 N N N ? ? ? 9.068 5.313 4.286 "HG2'" XR2 80 XR2 "HD1'" "HD1'" H 0 0 N N N ? ? ? 7.594 7.090 4.848 "HD1'" XR2 81 XR2 "HD2'" "HD2'" H 0 0 N N N ? ? ? 6.902 6.993 3.205 "HD2'" XR2 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XR2 C1 C2 DOUB Y N 1 XR2 C1 C11 SING Y N 2 XR2 C1 C SING N N 3 XR2 C2 C3 SING Y N 4 XR2 C2 H2 SING N N 5 XR2 C3 C4 DOUB Y N 6 XR2 C3 H3 SING N N 7 XR2 C4 C12 SING Y N 8 XR2 C4 H4 SING N N 9 XR2 C12 C11 SING Y N 10 XR2 C12 N5 DOUB Y N 11 XR2 C11 N10 DOUB Y N 12 XR2 N5 C13 SING Y N 13 XR2 N10 C14 SING Y N 14 XR2 N10 H10 SING N N 15 XR2 C13 C14 DOUB Y N 16 XR2 C13 C6 SING Y N 17 XR2 C14 C9 SING Y N 18 XR2 C6 C7 DOUB Y N 19 XR2 C6 H6 SING N N 20 XR2 C7 C8 SING Y N 21 XR2 C7 H7 SING N N 22 XR2 C8 C9 DOUB Y N 23 XR2 C8 H8 SING N N 24 XR2 C9 C9A SING N N 25 XR2 C9A H91 SING N N 26 XR2 C9A H92 SING N N 27 XR2 C9A H93 SING N N 28 XR2 C O DOUB N N 29 XR2 C N SING N N 30 XR2 N CA SING N N 31 XR2 N HN SING N N 32 XR2 CA CB SING N N 33 XR2 CA HA1 SING N N 34 XR2 CA HA2 SING N N 35 XR2 CB NG SING N N 36 XR2 CB HB1 SING N N 37 XR2 CB HB2 SING N N 38 XR2 NG CD SING N N 39 XR2 NG HG1 SING N N 40 XR2 NG HG2 SING N N 41 XR2 CD "CD'" SING N N 42 XR2 CD HD1 SING N N 43 XR2 CD HD2 SING N N 44 XR2 "N'" "C'" SING N N 45 XR2 "N'" "CA'" SING N N 46 XR2 "N'" "HN'" SING N N 47 XR2 "C'" "O'" DOUB N N 48 XR2 "C'" "C1'" SING N N 49 XR2 "C1'" "C2'" DOUB Y N 50 XR2 "C1'" CBX SING Y N 51 XR2 "C2'" "C3'" SING Y N 52 XR2 "C2'" "H2'" SING N N 53 XR2 "C3'" "C4'" DOUB Y N 54 XR2 "C3'" "H3'" SING N N 55 XR2 "C4'" CCX SING Y N 56 XR2 "C4'" "H4'" SING N N 57 XR2 CCX "N5'" DOUB Y N 58 XR2 CCX CBX SING Y N 59 XR2 "N5'" CDX SING Y N 60 XR2 CDX CEX DOUB Y N 61 XR2 CDX "C6'" SING Y N 62 XR2 CEX NAX SING Y N 63 XR2 CEX "C9'" SING Y N 64 XR2 NAX CBX DOUB Y N 65 XR2 NAX "H10'" SING N N 66 XR2 "C9'" "C8'" DOUB Y N 67 XR2 "C9'" C9X SING N N 68 XR2 "C8'" "C7'" SING Y N 69 XR2 "C8'" "H8'" SING N N 70 XR2 "C7'" "C6'" DOUB Y N 71 XR2 "C7'" "H7'" SING N N 72 XR2 "C6'" "H6'" SING N N 73 XR2 C9X "H91'" SING N N 74 XR2 C9X "H92'" SING N N 75 XR2 C9X "H93'" SING N N 76 XR2 "CA'" "CB'" SING N N 77 XR2 "CA'" "HA1'" SING N N 78 XR2 "CA'" "HA2'" SING N N 79 XR2 "CB'" "NG'" SING N N 80 XR2 "CB'" "HB1'" SING N N 81 XR2 "CB'" "HB2'" SING N N 82 XR2 "NG'" "CD'" SING N N 83 XR2 "NG'" "HG1'" SING N N 84 XR2 "NG'" "HG2'" SING N N 85 XR2 "CD'" "HD1'" SING N N 86 XR2 "CD'" "HD2'" SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XR2 SMILES ACDLabs 12.01 "O=C(c2c1[nH+]c3c(cccc3nc1ccc2)C)NCC[NH2+]CC[NH2+]CCNC(=O)c5c4[nH+]c6c(nc4ccc5)cccc6C" XR2 InChI InChI 1.03 "InChI=1S/C34H34N8O2/c1-21-7-3-11-25-29(21)41-31-23(9-5-13-27(31)39-25)33(43)37-19-17-35-15-16-36-18-20-38-34(44)24-10-6-14-28-32(24)42-30-22(2)8-4-12-26(30)40-28/h3-14,35-36H,15-20H2,1-2H3,(H,37,43)(H,38,44)/p+4" XR2 InChIKey InChI 1.03 SFOADSRLCHRTKT-UHFFFAOYSA-R XR2 SMILES_CANONICAL CACTVS 3.370 "Cc1cccc2nc3cccc(C(=O)NCC[NH2+]CC[NH2+]CCNC(=O)c4cccc5nc6cccc(C)c6[nH+]c45)c3[nH+]c12" XR2 SMILES CACTVS 3.370 "Cc1cccc2nc3cccc(C(=O)NCC[NH2+]CC[NH2+]CCNC(=O)c4cccc5nc6cccc(C)c6[nH+]c45)c3[nH+]c12" XR2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1cccc2c1[nH+]c3c(cccc3n2)C(=O)NCC[NH2+]CC[NH2+]CCNC(=O)c4cccc5c4[nH+]c6c(cccc6n5)C" XR2 SMILES "OpenEye OEToolkits" 1.7.2 "Cc1cccc2c1[nH+]c3c(cccc3n2)C(=O)NCC[NH2+]CC[NH2+]CCNC(=O)c4cccc5c4[nH+]c6c(cccc6n5)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XR2 "SYSTEMATIC NAME" ACDLabs 12.01 "4,4'-[ethane-1,2-diylbis(ammonioethane-2,1-diylcarbamoyl)]bis(6-methylphenazin-5-ium)" XR2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "2-[(9-methylphenazin-10-ium-1-yl)carbonylamino]ethyl-[2-[2-[(9-methylphenazin-10-ium-1-yl)carbonylamino]ethylazaniumyl]ethyl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XR2 "Create component" 2004-08-26 RCSB XR2 "Modify descriptor" 2011-06-04 RCSB XR2 "Modify name" 2011-06-07 RCSB XR2 "Modify descriptor" 2011-06-07 RCSB XR2 "Modify identifier" 2011-06-07 RCSB #