data_XR3 # _chem_comp.id XR3 _chem_comp.name "N-[[(3S)-1-oxidanyl-3H-2,1-benzoxaborol-3-yl]methyl]-4-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H13 B N2 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2023-11-08 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.139 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XR3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8R30 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag XR3 C11 C1 C 0 1 Y N N -11.746 -5.247 7.387 ? ? ? C11 XR3 1 N N N XR3 C15 C2 C 0 1 Y N N -10.482 -5.740 7.156 ? ? ? C15 XR3 2 N N N XR3 C10 C3 C 0 1 Y N N -11.967 -3.985 7.898 ? ? ? C10 XR3 3 N N N XR3 C9 C4 C 0 1 Y N N -10.877 -3.179 8.173 ? ? ? C9 XR3 4 N N N XR3 C8 C5 C 0 1 Y N N -9.599 -3.659 7.939 ? ? ? C8 XR3 5 N N N XR3 C5 C6 C 0 1 N N N -8.801 -2.427 10.838 ? ? ? C5 XR3 6 N N N XR3 C4 C7 C 0 1 N N S -8.122 -2.219 12.163 ? ? ? C4 XR3 7 N N N XR3 B2 B1 B -1 1 N N N -6.102 -3.176 13.142 ? ? ? B2 XR3 8 N N N XR3 C16 C8 C 0 1 Y N N -9.394 -4.934 7.432 ? ? ? C16 XR3 9 N N N XR3 C19 C9 C 0 1 Y N N -7.056 -1.157 12.216 ? ? ? C19 XR3 10 N N N XR3 C20 C10 C 0 1 Y N N -7.137 0.131 11.694 ? ? ? C20 XR3 11 N N N XR3 C21 C11 C 0 1 Y N N -6.041 0.972 11.788 ? ? ? C21 XR3 12 N N N XR3 C22 C12 C 0 1 Y N N -4.876 0.527 12.388 ? ? ? C22 XR3 13 N N N XR3 C23 C13 C 0 1 Y N N -4.801 -0.759 12.900 ? ? ? C23 XR3 14 N N N XR3 C24 C14 C 0 1 Y N N -5.893 -1.633 12.816 ? ? ? C24 XR3 15 N N N XR3 N12 N1 N 1 1 N N N -12.896 -6.075 7.028 ? ? ? N12 XR3 16 N N N XR3 N6 N2 N 0 1 N N N -7.834 -2.858 9.827 ? ? ? N6 XR3 17 N N N XR3 O1 O1 O 0 1 N N N -5.077 -3.985 12.431 ? ? ? O1 XR3 18 N N N XR3 O13 O2 O -1 1 N N N -12.709 -7.036 6.303 ? ? ? O13 XR3 19 N N N XR3 O14 O3 O 0 1 N N N -13.979 -5.800 7.511 ? ? ? O14 XR3 20 N N N XR3 O17 O4 O 0 1 N N N -7.103 -3.108 7.517 ? ? ? O17 XR3 21 N N N XR3 O18 O5 O 0 1 N N N -8.638 -1.273 8.147 ? ? ? O18 XR3 22 N N N XR3 O3 O6 O 0 1 N N N -7.511 -3.404 12.655 ? ? ? O3 XR3 23 N N N XR3 S7 S1 S 0 1 N N N -8.211 -2.630 8.286 ? ? ? S7 XR3 24 N N N XR3 H15 H1 H 0 1 N N N -10.343 -6.738 6.766 ? ? ? H15 XR3 25 N N N XR3 H10 H2 H 0 1 N N N -12.972 -3.633 8.080 ? ? ? H10 XR3 26 N N N XR3 H9 H3 H 0 1 N N N -11.021 -2.184 8.567 ? ? ? H9 XR3 27 N N N XR3 H5A H4 H 0 1 N N N -9.578 -3.198 10.947 ? ? ? H5A XR3 28 N N N XR3 H5B H5 H 0 1 N N N -9.264 -1.482 10.516 ? ? ? H5B XR3 29 N N N XR3 H4 H6 H 0 1 N N N -8.903 -1.921 12.878 ? ? ? H4 XR3 30 N N N XR3 H16 H7 H 0 1 N N N -8.391 -5.294 7.254 ? ? ? H16 XR3 31 N N N XR3 H20 H8 H 0 1 N N N -8.046 0.471 11.220 ? ? ? H20 XR3 32 N N N XR3 H21 H9 H 0 1 N N N -6.095 1.976 11.393 ? ? ? H21 XR3 33 N N N XR3 H22 H10 H 0 1 N N N -4.022 1.184 12.458 ? ? ? H22 XR3 34 N N N XR3 H23 H11 H 0 1 N N N -3.888 -1.092 13.370 ? ? ? H23 XR3 35 N N N XR3 H6 H12 H 0 1 N N N -6.981 -2.366 10.001 ? ? ? H6 XR3 36 N N N XR3 H1 H13 H 0 1 N N N -5.499 -4.523 11.772 ? ? ? H1 XR3 37 N N N # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XR3 O1 B2 SING N N 1 XR3 B2 O3 SING N N 2 XR3 O3 C4 SING N N 3 XR3 C4 C5 SING N N 4 XR3 C5 N6 SING N N 5 XR3 N6 S7 SING N N 6 XR3 S7 C8 SING N N 7 XR3 C8 C9 DOUB Y N 8 XR3 C9 C10 SING Y N 9 XR3 C10 C11 DOUB Y N 10 XR3 C11 N12 SING N N 11 XR3 N12 O13 SING N N 12 XR3 N12 O14 DOUB N N 13 XR3 C11 C15 SING Y N 14 XR3 C15 C16 DOUB Y N 15 XR3 S7 O17 DOUB N N 16 XR3 S7 O18 DOUB N N 17 XR3 C4 C19 SING N N 18 XR3 C19 C20 SING Y N 19 XR3 C20 C21 DOUB Y N 20 XR3 C21 C22 SING Y N 21 XR3 C22 C23 DOUB Y N 22 XR3 C23 C24 SING Y N 23 XR3 C24 B2 SING N N 24 XR3 C16 C8 SING Y N 25 XR3 C24 C19 DOUB Y N 26 XR3 C15 H15 SING N N 27 XR3 C10 H10 SING N N 28 XR3 C9 H9 SING N N 29 XR3 C5 H5A SING N N 30 XR3 C5 H5B SING N N 31 XR3 C4 H4 SING N N 32 XR3 C16 H16 SING N N 33 XR3 C20 H20 SING N N 34 XR3 C21 H21 SING N N 35 XR3 C22 H22 SING N N 36 XR3 C23 H23 SING N N 37 XR3 N6 H6 SING N N 38 XR3 O1 H1 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XR3 InChI InChI 1.06 "InChI=1S/C14H14BN2O6S/c18-15-13-4-2-1-3-12(13)14(23-15)9-16-24(21,22)11-7-5-10(6-8-11)17(19)20/h1-8,14-16,18H,9H2/q-1/t14-,15-/m1/s1" XR3 InChIKey InChI 1.06 GBEOHIBOUUYNIJ-HUUCEWRRSA-N XR3 SMILES_CANONICAL CACTVS 3.385 "O[B-]1O[C@H](CN[S](=O)(=O)c2ccc(cc2)[N+]([O-])=O)c3ccccc13" XR3 SMILES CACTVS 3.385 "O[B-]1O[CH](CN[S](=O)(=O)c2ccc(cc2)[N+]([O-])=O)c3ccccc13" XR3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]1(c2ccccc2[C@H](O1)CNS(=O)(=O)c3ccc(cc3)[N+](=O)[O-])O" XR3 SMILES "OpenEye OEToolkits" 2.0.7 "[B-]1(c2ccccc2C(O1)CNS(=O)(=O)c3ccc(cc3)[N+](=O)[O-])O" # _pdbx_chem_comp_identifier.comp_id XR3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[(3~{S})-1-oxidanyl-3~{H}-2,1-benzoxaborol-3-yl]methyl]-4-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]benzenesulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XR3 "Create component" 2023-11-08 PDBE XR3 "Modify charge" 2023-11-12 PDBE XR3 "Modify PCM" 2024-09-27 PDBE XR3 "Initial release" 2024-11-20 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XR3 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #