data_XR8 # _chem_comp.id XR8 _chem_comp.name "5-[(azetidin-3-yl)amino]-2-methyl-N-[(1R)-1-(3-{5-[(pyrrolidin-1-yl)methyl]thiophen-2-yl}phenyl)ethyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-12 _chem_comp.pdbx_modified_date 2021-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.661 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XR8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LBS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XR8 C01 C1 C 0 1 N N N 11.788 -12.142 29.673 0.587 1.357 2.644 C01 XR8 1 XR8 C02 C2 C 0 1 N N R 11.300 -11.895 31.097 0.607 0.965 1.165 C02 XR8 2 XR8 N03 N1 N 0 1 N N N 10.718 -10.561 31.235 1.992 0.770 0.730 N03 XR8 3 XR8 C04 C3 C 0 1 N N N 10.520 -9.896 32.566 2.727 1.826 0.327 C04 XR8 4 XR8 C05 C4 C 0 1 Y N N 9.912 -8.420 32.751 4.125 1.629 -0.112 C05 XR8 5 XR8 C06 C5 C 0 1 Y N N 10.901 -7.428 32.879 4.848 2.697 -0.648 C06 XR8 6 XR8 C07 C6 C 0 1 N N N 12.419 -7.789 32.790 4.203 4.052 -0.779 C07 XR8 7 XR8 C08 C7 C 0 1 Y N N 10.577 -6.136 33.072 6.152 2.510 -1.057 C08 XR8 8 XR8 C09 C8 C 0 1 Y N N 9.279 -5.754 33.148 6.748 1.268 -0.939 C09 XR8 9 XR8 C10 C9 C 0 1 Y N N 8.235 -6.675 33.020 6.037 0.199 -0.408 C10 XR8 10 XR8 N11 N2 N 0 1 N N N 6.879 -6.006 33.180 6.644 -1.054 -0.291 N11 XR8 11 XR8 C12 C10 C 0 1 N N N 5.615 -6.347 32.588 8.029 -1.241 -0.729 C12 XR8 12 XR8 C13 C11 C 0 1 N N N 5.601 -6.680 31.155 8.379 -2.700 -1.071 C13 XR8 13 XR8 N14 N3 N 0 1 N N N 4.962 -5.362 30.939 8.783 -2.832 0.346 N14 XR8 14 XR8 C15 C12 C 0 1 N N N 4.844 -5.092 32.369 9.033 -1.373 0.431 C15 XR8 15 XR8 C16 C13 C 0 1 Y N N 8.565 -8.030 32.832 4.727 0.377 0.012 C16 XR8 16 XR8 O17 O1 O 0 1 N N N 10.924 -10.450 33.553 2.240 2.940 0.324 O17 XR8 17 XR8 C18 C14 C 0 1 Y N N 10.209 -12.895 31.572 -0.165 -0.315 0.975 C18 XR8 18 XR8 C19 C15 C 0 1 Y N N 10.521 -13.798 32.594 -1.462 -0.274 0.507 C19 XR8 19 XR8 C20 C16 C 0 1 Y N N 9.539 -14.622 33.098 -2.175 -1.461 0.330 C20 XR8 20 XR8 C21 C17 C 0 1 Y N N 9.860 -15.647 34.218 -3.565 -1.424 -0.171 C21 XR8 21 XR8 C22 C18 C 0 1 Y N N 8.992 -16.255 35.177 -4.348 -2.502 -0.374 C22 XR8 22 XR8 C23 C19 C 0 1 Y N N 9.808 -17.264 36.049 -5.612 -2.216 -0.847 C23 XR8 23 XR8 C24 C20 C 0 1 Y N N 11.181 -17.280 35.626 -5.867 -0.918 -1.032 C24 XR8 24 XR8 C25 C21 C 0 1 N N N 12.362 -18.168 36.160 -7.169 -0.353 -1.539 C25 XR8 25 XR8 N26 N4 N 0 1 N N N 12.629 -18.992 35.300 -8.058 -0.077 -0.403 N26 XR8 26 XR8 C27 C22 C 0 1 N N N 13.800 -18.625 34.254 -7.593 1.110 0.360 C27 XR8 27 XR8 C28 C23 C 0 1 N N N 14.320 -19.756 33.781 -8.861 1.555 1.131 C28 XR8 28 XR8 C29 C24 C 0 1 N N N 13.702 -20.875 34.541 -9.995 1.294 0.113 C29 XR8 29 XR8 C30 C25 C 0 1 N N N 12.840 -20.211 35.672 -9.424 0.251 -0.866 C30 XR8 30 XR8 S31 S1 S 0 1 Y N N 11.381 -16.195 34.404 -4.456 0.034 -0.588 S31 XR8 31 XR8 C32 C26 C 0 1 Y N N 8.255 -14.614 32.522 -1.569 -2.682 0.629 C32 XR8 32 XR8 C33 C27 C 0 1 Y N N 7.943 -13.704 31.516 -0.271 -2.710 1.096 C33 XR8 33 XR8 C34 C28 C 0 1 Y N N 8.915 -12.840 31.037 0.431 -1.530 1.264 C34 XR8 34 XR8 H1 H1 H 0 1 N N N 12.219 -13.152 29.603 1.145 2.283 2.782 H1 XR8 35 XR8 H2 H2 H 0 1 N N N 10.942 -12.055 28.975 -0.443 1.502 2.968 H2 XR8 36 XR8 H3 H3 H 0 1 N N N 12.555 -11.397 29.414 1.046 0.565 3.236 H3 XR8 37 XR8 H4 H4 H 0 1 N N N 12.160 -11.984 31.777 0.148 1.758 0.573 H4 XR8 38 XR8 H5 H5 H 0 1 N N N 10.440 -10.071 30.408 2.380 -0.119 0.732 H5 XR8 39 XR8 H6 H6 H 0 1 N N N 12.751 -7.723 31.744 4.276 4.583 0.171 H6 XR8 40 XR8 H7 H7 H 0 1 N N N 13.000 -7.085 33.404 4.713 4.624 -1.554 H7 XR8 41 XR8 H8 H8 H 0 1 N N N 12.575 -8.813 33.160 3.154 3.931 -1.048 H8 XR8 42 XR8 H9 H9 H 0 1 N N N 11.359 -5.397 33.167 6.710 3.338 -1.471 H9 XR8 43 XR8 H10 H10 H 0 1 N N N 9.045 -4.712 33.311 7.770 1.129 -1.261 H10 XR8 44 XR8 H11 H11 H 0 1 N N N 7.036 -5.060 32.896 6.147 -1.801 0.080 H11 XR8 45 XR8 H12 H12 H 0 1 N N N 5.049 -7.075 33.188 8.334 -0.526 -1.493 H12 XR8 46 XR8 H13 H13 H 0 1 N N N 4.976 -7.545 30.888 7.515 -3.308 -1.340 H13 XR8 47 XR8 H14 H14 H 0 1 N N N 6.595 -6.791 30.698 9.205 -2.800 -1.776 H14 XR8 48 XR8 H15 H15 H 0 1 N N N 5.550 -4.710 30.460 7.999 -3.099 0.922 H15 XR8 49 XR8 H17 H17 H 0 1 N N N 5.349 -4.176 32.708 10.051 -1.085 0.167 H17 XR8 50 XR8 H18 H18 H 0 1 N N N 3.815 -5.109 32.758 8.690 -0.923 1.363 H18 XR8 51 XR8 H19 H19 H 0 1 N N N 7.783 -8.770 32.750 4.175 -0.451 0.429 H19 XR8 52 XR8 H20 H20 H 0 1 N N N 11.526 -13.849 32.986 -1.924 0.675 0.278 H20 XR8 53 XR8 H21 H21 H 0 1 N N N 7.937 -16.049 35.283 -4.012 -3.511 -0.182 H21 XR8 54 XR8 H22 H22 H 0 1 N N N 9.400 -17.861 36.851 -6.341 -2.986 -1.054 H22 XR8 55 XR8 H23 H23 H 0 1 N N N 12.057 -18.679 37.085 -6.977 0.571 -2.083 H23 XR8 56 XR8 H24 H24 H 0 1 N N N 13.242 -17.539 36.361 -7.643 -1.075 -2.204 H24 XR8 57 XR8 H26 H26 H 0 1 N N N 14.582 -18.043 34.763 -6.798 0.835 1.053 H26 XR8 58 XR8 H27 H27 H 0 1 N N N 13.384 -18.034 33.425 -7.257 1.895 -0.317 H27 XR8 59 XR8 H28 H28 H 0 1 N N N 14.092 -19.857 32.710 -9.000 0.949 2.027 H28 XR8 60 XR8 H29 H29 H 0 1 N N N 15.410 -19.759 33.926 -8.807 2.613 1.385 H29 XR8 61 XR8 H30 H30 H 0 1 N N N 13.063 -21.479 33.879 -10.874 0.895 0.619 H30 XR8 62 XR8 H31 H31 H 0 1 N N N 14.482 -21.514 34.981 -10.246 2.212 -0.417 H31 XR8 63 XR8 H32 H32 H 0 1 N N N 11.885 -20.745 35.786 -9.384 0.669 -1.872 H32 XR8 64 XR8 H33 H33 H 0 1 N N N 13.386 -20.229 36.627 -10.044 -0.645 -0.857 H33 XR8 65 XR8 H34 H34 H 0 1 N N N 7.509 -15.317 32.862 -2.116 -3.604 0.495 H34 XR8 66 XR8 H35 H35 H 0 1 N N N 6.943 -13.671 31.109 0.198 -3.654 1.328 H35 XR8 67 XR8 H36 H36 H 0 1 N N N 8.677 -12.131 30.258 1.447 -1.557 1.630 H36 XR8 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XR8 C01 C02 SING N N 1 XR8 N14 C13 SING N N 2 XR8 N14 C15 SING N N 3 XR8 C34 C33 DOUB Y N 4 XR8 C34 C18 SING Y N 5 XR8 C02 N03 SING N N 6 XR8 C02 C18 SING N N 7 XR8 C13 C12 SING N N 8 XR8 N03 C04 SING N N 9 XR8 C33 C32 SING Y N 10 XR8 C18 C19 DOUB Y N 11 XR8 C15 C12 SING N N 12 XR8 C32 C20 DOUB Y N 13 XR8 C04 C05 SING N N 14 XR8 C04 O17 DOUB N N 15 XR8 C12 N11 SING N N 16 XR8 C19 C20 SING Y N 17 XR8 C05 C16 DOUB Y N 18 XR8 C05 C06 SING Y N 19 XR8 C07 C06 SING N N 20 XR8 C16 C10 SING Y N 21 XR8 C06 C08 DOUB Y N 22 XR8 C10 C09 DOUB Y N 23 XR8 C10 N11 SING N N 24 XR8 C08 C09 SING Y N 25 XR8 C20 C21 SING N N 26 XR8 C28 C27 SING N N 27 XR8 C28 C29 SING N N 28 XR8 C21 S31 SING Y N 29 XR8 C21 C22 DOUB Y N 30 XR8 C27 N26 SING N N 31 XR8 S31 C24 SING Y N 32 XR8 C29 C30 SING N N 33 XR8 C22 C23 SING Y N 34 XR8 N26 C30 SING N N 35 XR8 N26 C25 SING N N 36 XR8 C24 C23 DOUB Y N 37 XR8 C24 C25 SING N N 38 XR8 C01 H1 SING N N 39 XR8 C01 H2 SING N N 40 XR8 C01 H3 SING N N 41 XR8 C02 H4 SING N N 42 XR8 N03 H5 SING N N 43 XR8 C07 H6 SING N N 44 XR8 C07 H7 SING N N 45 XR8 C07 H8 SING N N 46 XR8 C08 H9 SING N N 47 XR8 C09 H10 SING N N 48 XR8 N11 H11 SING N N 49 XR8 C12 H12 SING N N 50 XR8 C13 H13 SING N N 51 XR8 C13 H14 SING N N 52 XR8 N14 H15 SING N N 53 XR8 C15 H17 SING N N 54 XR8 C15 H18 SING N N 55 XR8 C16 H19 SING N N 56 XR8 C19 H20 SING N N 57 XR8 C22 H21 SING N N 58 XR8 C23 H22 SING N N 59 XR8 C25 H23 SING N N 60 XR8 C25 H24 SING N N 61 XR8 C27 H26 SING N N 62 XR8 C27 H27 SING N N 63 XR8 C28 H28 SING N N 64 XR8 C28 H29 SING N N 65 XR8 C29 H30 SING N N 66 XR8 C29 H31 SING N N 67 XR8 C30 H32 SING N N 68 XR8 C30 H33 SING N N 69 XR8 C32 H34 SING N N 70 XR8 C33 H35 SING N N 71 XR8 C34 H36 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XR8 SMILES ACDLabs 12.01 "CC(NC(c1cc(ccc1C)NC2CNC2)=O)c5cc(c3sc(cc3)CN4CCCC4)ccc5" XR8 InChI InChI 1.03 "InChI=1S/C28H34N4OS/c1-19-8-9-23(31-24-16-29-17-24)15-26(19)28(33)30-20(2)21-6-5-7-22(14-21)27-11-10-25(34-27)18-32-12-3-4-13-32/h5-11,14-15,20,24,29,31H,3-4,12-13,16-18H2,1-2H3,(H,30,33)/t20-/m1/s1" XR8 InChIKey InChI 1.03 ZTKSBNLNPMUGBL-HXUWFJFHSA-N XR8 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN5CCCC5)cc4" XR8 SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN5CCCC5)cc4" XR8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc(c2)c3ccc(s3)CN4CCCC4)NC5CNC5" XR8 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cccc(c2)c3ccc(s3)CN4CCCC4)NC5CNC5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XR8 "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(azetidin-3-yl)amino]-2-methyl-N-[(1R)-1-(3-{5-[(pyrrolidin-1-yl)methyl]thiophen-2-yl}phenyl)ethyl]benzamide" XR8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-(pyrrolidin-1-ylmethyl)thiophen-2-yl]phenyl]ethyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XR8 "Create component" 2021-01-12 RCSB XR8 "Initial release" 2021-02-24 RCSB ##