data_XRB
#
_chem_comp.id XRB
_chem_comp.name "5-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}pyrimidin-2-yl)amino]-2-[4-(methanesulfonyl)piperazin-1-yl]benzonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H27 N7 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-12-06
_chem_comp.pdbx_modified_date 2023-10-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 529.613
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XRB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FE8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XRB N N1 N 0 1 N N N 46.337 -28.471 42.099 -9.790 4.573 1.239 N XRB 1
XRB C C1 C 0 1 N N N 49.913 -23.344 37.316 -5.756 -1.771 -2.503 C XRB 2
XRB O O1 O 0 1 N N N 52.524 -24.441 36.980 -4.808 -2.718 -0.019 O XRB 3
XRB C1 C2 C 0 1 Y N N 50.346 -24.643 37.944 -6.087 -1.095 -1.197 C1 XRB 4
XRB C10 C3 C 0 1 Y N N 51.621 -25.170 37.743 -5.590 -1.608 -0.005 C10 XRB 5
XRB C11 C4 C 0 1 Y N N 52.608 -24.727 35.647 -3.468 -2.551 -0.136 C11 XRB 6
XRB C12 C5 C 0 1 Y N N 53.275 -23.794 34.852 -2.617 -3.655 -0.156 C12 XRB 7
XRB C13 C6 C 0 1 Y N N 53.365 -24.143 33.520 -1.257 -3.437 -0.277 C13 XRB 8
XRB C14 C7 C 0 1 Y N N 52.245 -26.078 33.881 -1.639 -1.166 -0.346 C14 XRB 9
XRB C15 C8 C 0 1 Y N N 51.274 -28.433 33.938 0.257 0.323 -0.450 C15 XRB 10
XRB C16 C9 C 0 1 Y N N 50.878 -28.482 35.271 0.802 1.352 -1.196 C16 XRB 11
XRB C17 C10 C 0 1 Y N N 50.421 -29.676 35.812 2.184 1.560 -1.191 C17 XRB 12
XRB C18 C11 C 0 1 N N N 50.026 -29.715 37.197 2.756 2.623 -1.960 C18 XRB 13
XRB C19 C12 C 0 1 Y N N 50.350 -30.835 35.024 3.009 0.720 -0.426 C19 XRB 14
XRB C2 C13 C 0 1 Y N N 49.475 -25.365 38.755 -6.876 0.034 -1.188 C2 XRB 15
XRB C20 C14 C 0 1 N N N 48.429 -32.286 35.332 4.867 1.195 0.946 C20 XRB 16
XRB C21 C15 C 0 1 N N N 47.851 -33.168 36.416 6.349 1.584 0.892 C21 XRB 17
XRB C22 C16 C 0 1 N N N 49.461 -36.144 38.576 7.818 -1.564 1.791 C22 XRB 18
XRB C23 C17 C 0 1 N N N 49.803 -34.459 35.677 6.579 0.100 -1.137 C23 XRB 19
XRB C24 C18 C 0 1 N N N 50.657 -33.218 35.497 5.089 -0.230 -1.003 C24 XRB 20
XRB C25 C19 C 0 1 Y N N 50.755 -30.775 33.695 2.446 -0.309 0.317 C25 XRB 21
XRB C26 C20 C 0 1 Y N N 51.213 -29.583 33.158 1.081 -0.506 0.306 C26 XRB 22
XRB C3 C21 C 0 1 Y N N 49.852 -26.572 39.349 -7.182 0.660 0.025 C3 XRB 23
XRB C4 C22 C 0 1 N N N 48.939 -27.316 40.222 -8.025 1.865 0.041 C4 XRB 24
XRB C5 C23 C 0 1 N N N 47.701 -26.960 40.530 -8.319 2.468 1.212 C5 XRB 25
XRB C6 C24 C 0 1 N N N 46.930 -27.787 41.399 -9.139 3.642 1.227 C6 XRB 26
XRB C7 C25 C 0 1 Y N N 51.137 -27.060 39.107 -6.685 0.136 1.224 C7 XRB 27
XRB C8 C26 C 0 1 Y N N 52.042 -26.375 38.305 -5.892 -0.990 1.203 C8 XRB 28
XRB C9 C27 C 0 1 N N N 53.424 -26.929 38.071 -5.351 -1.552 2.492 C9 XRB 29
XRB N1 N2 N 0 1 Y N N 52.865 -25.273 33.006 -0.806 -2.196 -0.369 N1 XRB 30
XRB N2 N3 N 0 1 N N N 51.727 -27.228 33.356 -1.129 0.118 -0.450 N2 XRB 31
XRB N3 N4 N 0 1 N N N 49.705 -29.784 38.291 3.209 3.467 -2.571 N3 XRB 32
XRB N4 N5 N 0 1 N N N 49.838 -32.008 35.605 4.387 0.918 -0.414 N4 XRB 33
XRB N5 N6 N 0 1 N N N 48.828 -34.221 36.758 7.083 0.529 0.176 N5 XRB 34
XRB N6 N7 N 0 1 Y N N 52.086 -25.859 35.197 -2.948 -1.334 -0.237 N6 XRB 35
XRB O1 O2 O 0 1 N N N 47.110 -35.113 38.273 8.957 0.847 1.696 O1 XRB 36
XRB O2 O3 O 0 1 N N N 48.012 -36.520 36.469 9.182 -0.608 -0.292 O2 XRB 37
XRB S S1 S 0 1 N N N 48.223 -35.543 37.490 8.440 -0.156 0.832 S XRB 38
XRB H1 H1 H 0 1 N N N 49.463 -23.544 36.332 -4.838 -1.347 -2.909 H1 XRB 39
XRB H2 H2 H 0 1 N N N 49.173 -22.852 37.965 -5.620 -2.839 -2.334 H2 XRB 40
XRB H3 H3 H 0 1 N N N 50.787 -22.687 37.193 -6.572 -1.616 -3.209 H3 XRB 41
XRB H4 H4 H 0 1 N N N 53.686 -22.876 35.246 -3.011 -4.657 -0.080 H4 XRB 42
XRB H5 H5 H 0 1 N N N 53.870 -23.462 32.851 -0.571 -4.271 -0.296 H5 XRB 43
XRB H6 H6 H 0 1 N N N 50.926 -27.594 35.883 0.161 1.994 -1.783 H6 XRB 44
XRB H7 H7 H 0 1 N N N 48.481 -24.982 38.930 -7.257 0.434 -2.115 H7 XRB 45
XRB H8 H8 H 0 1 N N N 47.871 -31.338 35.299 4.747 0.305 1.563 H8 XRB 46
XRB H9 H9 H 0 1 N N N 48.341 -32.797 34.362 4.291 2.015 1.375 H9 XRB 47
XRB H10 H10 H 0 1 N N N 47.636 -32.561 37.308 6.460 2.531 0.363 H10 XRB 48
XRB H11 H11 H 0 1 N N N 46.921 -33.632 36.056 6.739 1.679 1.905 H11 XRB 49
XRB H12 H12 H 0 1 N N N 49.641 -35.407 39.372 7.294 -2.253 1.128 H12 XRB 50
XRB H13 H13 H 0 1 N N N 49.128 -37.092 39.023 8.654 -2.080 2.264 H13 XRB 51
XRB H14 H14 H 0 1 N N N 50.392 -36.311 38.014 7.131 -1.206 2.559 H14 XRB 52
XRB H15 H15 H 0 1 N N N 49.269 -34.678 34.741 7.123 -0.786 -1.466 H15 XRB 53
XRB H16 H16 H 0 1 N N N 50.445 -35.313 35.941 6.716 0.903 -1.862 H16 XRB 54
XRB H17 H17 H 0 1 N N N 51.131 -33.246 34.505 4.674 -0.444 -1.988 H17 XRB 55
XRB H18 H18 H 0 1 N N N 51.435 -33.199 36.275 4.966 -1.101 -0.359 H18 XRB 56
XRB H19 H19 H 0 1 N N N 50.712 -31.661 33.079 3.079 -0.956 0.906 H19 XRB 57
XRB H20 H20 H 0 1 N N N 51.525 -29.546 32.125 0.649 -1.307 0.887 H20 XRB 58
XRB H21 H21 H 0 1 N N N 49.308 -28.235 40.652 -8.408 2.268 -0.885 H21 XRB 59
XRB H22 H22 H 0 1 N N N 47.279 -26.051 40.127 -7.935 2.065 2.138 H22 XRB 60
XRB H23 H23 H 0 1 N N N 51.436 -27.996 39.555 -6.918 0.616 2.162 H23 XRB 61
XRB H24 H24 H 0 1 N N N 54.107 -26.552 38.846 -4.384 -1.097 2.710 H24 XRB 62
XRB H25 H25 H 0 1 N N N 53.391 -28.028 38.115 -6.045 -1.335 3.303 H25 XRB 63
XRB H26 H26 H 0 1 N N N 53.783 -26.612 37.081 -5.231 -2.631 2.396 H26 XRB 64
XRB H27 H27 H 0 1 N N N 51.654 -27.214 32.359 -1.731 0.874 -0.523 H27 XRB 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XRB N1 C13 DOUB Y N 1
XRB N1 C14 SING Y N 2
XRB C26 C25 DOUB Y N 3
XRB C26 C15 SING Y N 4
XRB N2 C14 SING N N 5
XRB N2 C15 SING N N 6
XRB C13 C12 SING Y N 7
XRB C25 C19 SING Y N 8
XRB C14 N6 DOUB Y N 9
XRB C15 C16 DOUB Y N 10
XRB C12 C11 DOUB Y N 11
XRB C19 N4 SING N N 12
XRB C19 C17 DOUB Y N 13
XRB N6 C11 SING Y N 14
XRB C16 C17 SING Y N 15
XRB C20 N4 SING N N 16
XRB C20 C21 SING N N 17
XRB C24 N4 SING N N 18
XRB C24 C23 SING N N 19
XRB C11 O SING N N 20
XRB C23 N5 SING N N 21
XRB C17 C18 SING N N 22
XRB C21 N5 SING N N 23
XRB O2 S DOUB N N 24
XRB N5 S SING N N 25
XRB O C10 SING N N 26
XRB C18 N3 TRIP N N 27
XRB C C1 SING N N 28
XRB S O1 DOUB N N 29
XRB S C22 SING N N 30
XRB C10 C1 DOUB Y N 31
XRB C10 C8 SING Y N 32
XRB C1 C2 SING Y N 33
XRB C9 C8 SING N N 34
XRB C8 C7 DOUB Y N 35
XRB C2 C3 DOUB Y N 36
XRB C7 C3 SING Y N 37
XRB C3 C4 SING N N 38
XRB C4 C5 DOUB N E 39
XRB C5 C6 SING N N 40
XRB C6 N TRIP N N 41
XRB C H1 SING N N 42
XRB C H2 SING N N 43
XRB C H3 SING N N 44
XRB C12 H4 SING N N 45
XRB C13 H5 SING N N 46
XRB C16 H6 SING N N 47
XRB C2 H7 SING N N 48
XRB C20 H8 SING N N 49
XRB C20 H9 SING N N 50
XRB C21 H10 SING N N 51
XRB C21 H11 SING N N 52
XRB C22 H12 SING N N 53
XRB C22 H13 SING N N 54
XRB C22 H14 SING N N 55
XRB C23 H15 SING N N 56
XRB C23 H16 SING N N 57
XRB C24 H17 SING N N 58
XRB C24 H18 SING N N 59
XRB C25 H19 SING N N 60
XRB C26 H20 SING N N 61
XRB C4 H21 SING N N 62
XRB C5 H22 SING N N 63
XRB C7 H23 SING N N 64
XRB C9 H24 SING N N 65
XRB C9 H25 SING N N 66
XRB C9 H26 SING N N 67
XRB N2 H27 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XRB SMILES ACDLabs 12.01 "O=S(C)(=O)N1CCN(CC1)c1ccc(Nc2nc(Oc3c(C)cc(\C=C\C#N)cc3C)ccn2)cc1C#N"
XRB InChI InChI 1.06 "InChI=1S/C27H27N7O3S/c1-19-15-21(5-4-9-28)16-20(2)26(19)37-25-8-10-30-27(32-25)31-23-6-7-24(22(17-23)18-29)33-11-13-34(14-12-33)38(3,35)36/h4-8,10,15-17H,11-14H2,1-3H3,(H,30,31,32)/b5-4+"
XRB InChIKey InChI 1.06 MMKBLGUSICHJOZ-SNAWJCMRSA-N
XRB SMILES_CANONICAL CACTVS 3.385 "Cc1cc(\C=C\C#N)cc(C)c1Oc2ccnc(Nc3ccc(N4CCN(CC4)[S](C)(=O)=O)c(c3)C#N)n2"
XRB SMILES CACTVS 3.385 "Cc1cc(C=CC#N)cc(C)c1Oc2ccnc(Nc3ccc(N4CCN(CC4)[S](C)(=O)=O)c(c3)C#N)n2"
XRB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2ccnc(n2)Nc3ccc(c(c3)C#N)N4CCN(CC4)S(=O)(=O)C)C)/C=C/C#N"
XRB SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2ccnc(n2)Nc3ccc(c(c3)C#N)N4CCN(CC4)S(=O)(=O)C)C)C=CC#N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XRB "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}pyrimidin-2-yl)amino]-2-[4-(methanesulfonyl)piperazin-1-yl]benzonitrile"
XRB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[[4-[4-[(~{E})-2-cyanoethenyl]-2,6-dimethyl-phenoxy]pyrimidin-2-yl]amino]-2-(4-methylsulfonylpiperazin-1-yl)benzenecarbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XRB "Create component" 2022-12-06 RCSB
XRB "Initial release" 2023-10-18 RCSB
#