data_XRH
#
_chem_comp.id XRH
_chem_comp.name "2-[3-[7-chloranyl-4-(dimethylamino)-2-oxidanylidene-quinazolin-1-yl]phenoxy]-~{N}-[3-[7-chloranyl-4-(dimethylamino)-2-oxidanylidene-quinazolin-1-yl]phenyl]ethanamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H29 Cl2 N7 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "3-CARBAMIMIDOYL-1-(PYRIDIN-3-YLCARBAMOYLMETHYL)-1H-INDOLE-7-CARBOXYLIC ACID PYRIDIN-3-YLAMIDE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-12-08
_chem_comp.pdbx_modified_date 2024-02-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 670.545
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XRH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8XAM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBC
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XRH C11 C1 C 0 1 Y N N N N N -35.348 3.172 -41.545 4.288 0.651 0.474 C11 XRH 1
XRH C14 C2 C 0 1 N N N N N N -33.298 -0.561 -40.658 -0.426 -0.077 0.293 C14 XRH 2
XRH C15 C3 C 0 1 Y N N N N N -32.882 -2.727 -40.060 -2.750 -0.418 -0.084 C15 XRH 3
XRH C20 C4 C 0 1 N N N N N N -32.246 -6.741 -47.337 -11.102 1.946 -0.518 C20 XRH 4
XRH C21 C5 C 0 1 N N N N N N -29.796 -6.533 -47.075 -9.805 3.969 0.296 C21 XRH 5
XRH C22 C6 C 0 1 Y N N N N N -30.230 -6.103 -44.200 -8.602 0.445 -0.050 C22 XRH 6
XRH C23 C7 C 0 1 Y N N N N N -30.564 -5.459 -42.946 -7.369 -0.215 -0.207 C23 XRH 7
XRH C25 C8 C 0 1 Y N N N N N -28.326 -5.654 -42.257 -8.412 -2.269 0.437 C25 XRH 8
XRH C26 C9 C 0 1 Y N N N N N -27.957 -6.303 -43.430 -9.626 -1.613 0.595 C26 XRH 9
XRH C27 C10 C 0 1 Y N N N N N -28.909 -6.536 -44.443 -9.729 -0.270 0.357 C27 XRH 10
XRH C29 C11 C 0 1 Y N N N N N -32.652 -4.882 -39.151 -3.623 -1.646 -1.953 C29 XRH 11
XRH C30 C12 C 0 1 Y N N N N N -32.962 -3.564 -38.996 -2.575 -1.345 -1.105 C30 XRH 12
XRH C31 C13 C 0 1 Y N N N N N -35.026 3.316 -39.153 2.987 1.077 2.447 C31 XRH 13
XRH O3 O1 O 0 1 N N N N N N -32.398 -0.417 -41.452 -0.203 -0.400 -0.854 O3 XRH 14
XRH C13 C14 C 0 1 N N N N N N -34.658 0.133 -40.899 0.707 0.361 1.186 C13 XRH 15
XRH O1 O2 O 0 1 N N N N N N -34.510 1.310 -40.188 1.935 0.310 0.456 O1 XRH 16
XRH C12 C15 C 0 1 Y N N N N N -34.958 2.609 -40.315 3.062 0.677 1.121 C12 XRH 17
XRH C32 C16 C 0 1 Y N N N N N -35.427 4.635 -39.153 4.133 1.450 3.124 C32 XRH 18
XRH C33 C17 C 0 1 Y N N N N N -35.757 5.214 -40.379 5.355 1.432 2.481 C33 XRH 19
XRH C10 C18 C 0 1 Y N N N N N -35.729 4.472 -41.521 5.437 1.027 1.155 C10 XRH 20
XRH N2 N1 N 0 1 N N N N N N -36.088 5.070 -42.692 6.677 0.996 0.506 N2 XRH 21
XRH C9 C19 C 0 1 Y N N N N N -37.386 5.443 -42.924 7.228 -0.215 0.126 C9 XRH 22
XRH C8 C20 C 0 1 Y N N N N N -38.351 5.153 -42.023 6.585 -1.420 0.367 C8 XRH 23
XRH C7 C21 C 0 1 Y N N N N N -39.646 5.557 -42.263 7.179 -2.601 -0.034 C7 XRH 24
XRH CL CL1 CL 0 0 N N N N N N -40.903 5.114 -41.088 6.377 -4.111 0.266 CL XRH 25
XRH C6 C22 C 0 1 Y N N N N N -40.014 6.259 -43.397 8.411 -2.592 -0.675 C6 XRH 26
XRH C5 C23 C 0 1 Y N N N N N -39.029 6.546 -44.360 9.059 -1.413 -0.922 C5 XRH 27
XRH C4 C24 C 0 1 Y N N N N N -37.710 6.116 -44.141 8.476 -0.210 -0.525 C4 XRH 28
XRH C1 C25 C 0 1 N N N N N N -36.560 6.308 -45.018 9.128 1.085 -0.764 C1 XRH 29
XRH N1 N2 N 0 1 N N N N N N -36.710 6.779 -46.261 10.343 1.152 -1.393 N1 XRH 30
XRH C3 C26 C 0 1 N N N N N N -35.481 7.179 -46.906 11.372 2.074 -0.903 C3 XRH 31
XRH C2 C27 C 0 1 N N N N N N -37.961 6.633 -47.021 10.615 0.303 -2.556 C2 XRH 32
XRH N N3 N 0 1 N N N N N N -35.328 5.936 -44.705 8.513 2.186 -0.359 N XRH 33
XRH C C28 C 0 1 N N N N N N -35.068 5.408 -43.534 7.328 2.145 0.250 C XRH 34
XRH O O3 O 0 1 N N N N N N -33.920 5.110 -43.188 6.814 3.195 0.593 O XRH 35
XRH N3 N4 N 0 1 N N N N N N -33.185 -1.448 -39.704 -1.686 -0.109 0.770 N3 XRH 36
XRH C28 C29 C 0 1 Y N N N N N -32.337 -5.351 -40.440 -4.848 -1.028 -1.789 C28 XRH 37
XRH C17 C30 C 0 1 Y N N N N N -32.237 -4.499 -41.520 -5.029 -0.101 -0.771 C17 XRH 38
XRH C16 C31 C 0 1 Y N N N N N -32.541 -3.185 -41.381 -3.978 0.204 0.083 C16 XRH 39
XRH N4 N5 N 0 1 N N N N N N -31.875 -5.069 -42.729 -6.270 0.525 -0.606 N4 XRH 40
XRH C24 C32 C 0 1 Y N N N N N -29.606 -5.216 -42.003 -7.284 -1.577 0.040 C24 XRH 41
XRH CL1 CL2 CL 0 0 N N N N N N -27.067 -5.246 -41.088 -8.310 -3.974 0.747 CL1 XRH 42
XRH C19 C33 C 0 1 N N N N N N -31.356 -6.266 -45.143 -8.654 1.889 -0.320 C19 XRH 43
XRH N6 N6 N 0 1 N N N N N N -31.123 -6.617 -46.418 -9.827 2.585 -0.184 N6 XRH 44
XRH N5 N7 N 0 1 N N N N N N -32.591 -5.869 -44.831 -7.542 2.501 -0.697 N5 XRH 45
XRH C18 C34 C 0 1 N N N N N N -32.875 -5.346 -43.637 -6.391 1.845 -0.836 C18 XRH 46
XRH O2 O4 O 0 1 N N N N N N -34.040 -4.998 -43.306 -5.404 2.468 -1.187 O2 XRH 47
XRH H9 H1 H 0 1 N N N N N N -35.344 2.598 -42.460 4.349 0.336 -0.558 H9 XRH 48
XRH H16 H2 H 0 1 N N N N N N -31.876 -7.033 -48.331 -11.533 1.504 0.380 H16 XRH 49
XRH H14 H3 H 0 1 N N N N N N -32.942 -7.507 -46.964 -11.787 2.691 -0.922 H14 XRH 50
XRH H15 H4 H 0 1 N N N N N N -32.769 -5.776 -47.410 -10.933 1.166 -1.261 H15 XRH 51
XRH H19 H5 H 0 1 N N N N N N -29.879 -6.879 -48.116 -9.713 4.647 -0.553 H19 XRH 52
XRH H18 H6 H 0 1 N N N N N N -29.446 -5.490 -47.063 -10.730 4.182 0.833 H18 XRH 53
XRH H17 H7 H 0 1 N N N N N N -29.078 -7.167 -46.534 -8.956 4.108 0.965 H17 XRH 54
XRH H21 H8 H 0 1 N N N N N N -26.937 -6.630 -43.566 -10.497 -2.168 0.909 H21 XRH 55
XRH H22 H9 H 0 1 N N N N N N -28.639 -7.026 -45.367 -10.676 0.233 0.483 H22 XRH 56
XRH H24 H10 H 0 1 N N N N N N -32.648 -5.552 -38.304 -3.485 -2.366 -2.746 H24 XRH 57
XRH H25 H11 H 0 1 N N N N N N -33.270 -3.188 -38.031 -1.619 -1.830 -1.236 H25 XRH 58
XRH H26 H12 H 0 1 N N N N N N -34.763 2.838 -38.221 2.033 1.093 2.953 H26 XRH 59
XRH H10 H13 H 0 1 N N N N N N -34.822 0.330 -41.969 0.528 1.381 1.526 H10 XRH 60
XRH H11 H14 H 0 1 N N N N N N -35.490 -0.470 -40.505 0.768 -0.304 2.047 H11 XRH 61
XRH H27 H15 H 0 1 N N N N N N -35.484 5.201 -38.235 4.073 1.757 4.158 H27 XRH 62
XRH H28 H16 H 0 1 N N N N N N -36.036 6.256 -40.423 6.249 1.724 3.012 H28 XRH 63
XRH H8 H17 H 0 1 N N N N N N -38.109 4.609 -41.122 5.627 -1.435 0.866 H8 XRH 64
XRH H7 H18 H 0 1 N N N N N N -41.035 6.580 -43.540 8.861 -3.525 -0.982 H7 XRH 65
XRH H6 H19 H 0 1 N N N N N N -39.284 7.091 -45.257 10.017 -1.414 -1.421 H6 XRH 66
XRH H5 H20 H 0 1 N N N N N N -35.701 7.551 -47.918 11.989 1.568 -0.161 H5 XRH 67
XRH H3 H21 H 0 1 N N N N N N -35.002 7.976 -46.319 11.996 2.397 -1.736 H3 XRH 68
XRH H4 H22 H 0 1 N N N N N N -34.804 6.315 -46.972 10.894 2.942 -0.449 H4 XRH 69
XRH H2 H23 H 0 1 N N N N N N -37.845 7.097 -48.012 9.679 0.077 -3.067 H2 XRH 70
XRH H1 H24 H 0 1 N N N N N N -38.194 5.565 -47.141 11.285 0.825 -3.239 H1 XRH 71
XRH H H25 H 0 1 N N N N N N -38.780 7.128 -46.478 11.082 -0.625 -2.226 H XRH 72
XRH H12 H26 H 0 1 N N N N N N -33.317 -1.196 -38.745 -1.855 0.082 1.706 H12 XRH 73
XRH H23 H27 H 0 1 N N N N N N -32.169 -6.408 -40.588 -5.665 -1.265 -2.454 H23 XRH 74
XRH H13 H28 H 0 1 N N N N N N -32.528 -2.511 -42.225 -4.116 0.924 0.875 H13 XRH 75
XRH H20 H29 H 0 1 N N N N N N -29.845 -4.697 -41.087 -6.343 -2.093 -0.077 H20 XRH 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XRH O3 C14 DOUB N N 1
XRH C14 C13 SING N N 2
XRH C14 N3 SING N N 3
XRH C13 O1 SING N N 4
XRH O1 C12 SING N N 5
XRH C12 C11 SING Y N 6
XRH C12 C31 DOUB Y N 7
XRH C11 C10 DOUB Y N 8
XRH C31 C32 SING Y N 9
XRH C32 C33 DOUB Y N 10
XRH C33 C10 SING Y N 11
XRH C10 N2 SING N N 12
XRH N2 C9 SING N N 13
XRH N2 C SING N N 14
XRH C9 C8 DOUB Y N 15
XRH C9 C4 SING Y N 16
XRH C8 C7 SING Y N 17
XRH C7 CL SING N N 18
XRH C7 C6 DOUB Y N 19
XRH C6 C5 SING Y N 20
XRH C5 C4 DOUB Y N 21
XRH C4 C1 SING N N 22
XRH C1 N1 SING N N 23
XRH C1 N DOUB N N 24
XRH N1 C3 SING N N 25
XRH N1 C2 SING N N 26
XRH N C SING N N 27
XRH C O DOUB N N 28
XRH N3 C15 SING N N 29
XRH C15 C30 SING Y N 30
XRH C15 C16 DOUB Y N 31
XRH C30 C29 DOUB Y N 32
XRH C29 C28 SING Y N 33
XRH C28 C17 DOUB Y N 34
XRH C17 C16 SING Y N 35
XRH C17 N4 SING N N 36
XRH N4 C23 SING N N 37
XRH N4 C18 SING N N 38
XRH C23 C24 SING Y N 39
XRH C23 C22 DOUB Y N 40
XRH C24 C25 DOUB Y N 41
XRH C25 CL1 SING N N 42
XRH C25 C26 SING Y N 43
XRH C26 C27 DOUB Y N 44
XRH C27 C22 SING Y N 45
XRH C22 C19 SING N N 46
XRH C19 N6 SING N N 47
XRH C19 N5 DOUB N N 48
XRH N6 C21 SING N N 49
XRH N6 C20 SING N N 50
XRH N5 C18 SING N N 51
XRH C18 O2 DOUB N N 52
XRH C11 H9 SING N N 53
XRH C20 H16 SING N N 54
XRH C20 H14 SING N N 55
XRH C20 H15 SING N N 56
XRH C21 H19 SING N N 57
XRH C21 H18 SING N N 58
XRH C21 H17 SING N N 59
XRH C26 H21 SING N N 60
XRH C27 H22 SING N N 61
XRH C29 H24 SING N N 62
XRH C30 H25 SING N N 63
XRH C31 H26 SING N N 64
XRH C13 H10 SING N N 65
XRH C13 H11 SING N N 66
XRH C32 H27 SING N N 67
XRH C33 H28 SING N N 68
XRH C8 H8 SING N N 69
XRH C6 H7 SING N N 70
XRH C5 H6 SING N N 71
XRH C3 H5 SING N N 72
XRH C3 H3 SING N N 73
XRH C3 H4 SING N N 74
XRH C2 H2 SING N N 75
XRH C2 H1 SING N N 76
XRH C2 H SING N N 77
XRH N3 H12 SING N N 78
XRH C28 H23 SING N N 79
XRH C16 H13 SING N N 80
XRH C24 H20 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XRH InChI InChI 1.06 "InChI=1S/C34H29Cl2N7O4/c1-40(2)31-26-13-11-20(35)15-28(26)42(33(45)38-31)23-8-5-7-22(17-23)37-30(44)19-47-25-10-6-9-24(18-25)43-29-16-21(36)12-14-27(29)32(41(3)4)39-34(43)46/h5-18H,19H2,1-4H3,(H,37,44)"
XRH InChIKey InChI 1.06 GOGVJELCHJYKRJ-UHFFFAOYSA-N
XRH SMILES_CANONICAL CACTVS 3.385 "CN(C)C1=NC(=O)N(c2cccc(NC(=O)COc3cccc(c3)N4C(=O)N=C(N(C)C)c5ccc(Cl)cc45)c2)c6cc(Cl)ccc16"
XRH SMILES CACTVS 3.385 "CN(C)C1=NC(=O)N(c2cccc(NC(=O)COc3cccc(c3)N4C(=O)N=C(N(C)C)c5ccc(Cl)cc45)c2)c6cc(Cl)ccc16"
XRH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1=NC(=O)N(c2c1ccc(c2)Cl)c3cccc(c3)NC(=O)COc4cccc(c4)N5c6cc(ccc6C(=NC5=O)N(C)C)Cl"
XRH SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1=NC(=O)N(c2c1ccc(c2)Cl)c3cccc(c3)NC(=O)COc4cccc(c4)N5c6cc(ccc6C(=NC5=O)N(C)C)Cl"
#
_pdbx_chem_comp_identifier.comp_id XRH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[3-[7-chloranyl-4-(dimethylamino)-2-oxidanylidene-quinazolin-1-yl]phenoxy]-~{N}-[3-[7-chloranyl-4-(dimethylamino)-2-oxidanylidene-quinazolin-1-yl]phenyl]ethanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XRH "Create component" 2023-12-08 PDBC
XRH "Initial release" 2024-02-28 RCSB
#