data_XRL # _chem_comp.id XRL _chem_comp.name "4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H21 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-06 _chem_comp.pdbx_modified_date 2023-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 435.481 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XRL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FCE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XRL C10 C1 C 0 1 Y N N 11.455 64.693 -18.841 3.588 1.510 0.732 C10 XRL 1 XRL C13 C2 C 0 1 Y N N 11.852 61.981 -18.547 3.216 -0.878 -0.646 C13 XRL 2 XRL C15 C3 C 0 1 N N N 12.431 65.298 -16.652 1.712 0.987 2.294 C15 XRL 3 XRL C20 C4 C 0 1 Y N N 6.548 65.868 -15.078 -6.263 1.762 0.976 C20 XRL 4 XRL C21 C5 C 0 1 Y N N 7.033 66.242 -16.327 -6.557 1.591 -0.380 C21 XRL 5 XRL C22 C6 C 0 1 Y N N 8.145 65.613 -16.862 -5.550 1.194 -1.265 C22 XRL 6 XRL C24 C7 C 0 1 N N N 6.391 67.292 -17.092 -7.886 1.820 -0.861 C24 XRL 7 XRL C28 C8 C 0 1 N N N 15.032 61.124 -15.961 0.930 -3.801 1.202 C28 XRL 8 XRL C11 C9 C 0 1 Y N N 11.055 63.841 -19.858 4.409 1.188 -0.355 C11 XRL 9 XRL C12 C10 C 0 1 Y N N 11.262 62.478 -19.704 4.214 -0.017 -1.042 C12 XRL 10 XRL C14 C11 C 0 1 Y N N 12.260 62.842 -17.507 2.399 -0.551 0.432 C14 XRL 11 XRL C16 C12 C 0 1 N N N 12.034 60.477 -18.469 3.001 -2.172 -1.388 C16 XRL 12 XRL C18 C13 C 0 1 Y N N 8.295 64.222 -14.888 -3.986 1.141 0.552 C18 XRL 13 XRL C19 C14 C 0 1 Y N N 7.176 64.859 -14.363 -4.984 1.541 1.435 C19 XRL 14 XRL C23 C15 C 0 1 Y N N 8.766 64.611 -16.144 -4.274 0.974 -0.799 C23 XRL 15 XRL C25 C16 C 0 1 N N N 14.951 60.572 -14.545 1.050 -3.918 -0.294 C25 XRL 16 XRL C27 C17 C 0 1 N N N 10.451 64.443 -21.055 5.473 2.111 -0.775 C27 XRL 17 XRL C29 C18 C 0 1 N N N 14.301 62.418 -16.264 1.672 -2.559 1.698 C29 XRL 18 XRL C01 C19 C 0 1 Y N N 12.591 61.399 -14.016 -0.473 -2.100 -0.555 C01 XRL 19 XRL C02 C20 C 0 1 Y N N 12.149 62.111 -15.149 0.079 -1.225 0.391 C02 XRL 20 XRL C04 C21 C 0 1 Y N N 10.135 62.605 -14.079 -1.931 -0.114 0.491 C04 XRL 21 XRL C06 C22 C 0 1 Y N N 11.691 61.368 -12.948 -1.793 -1.932 -0.926 C06 XRL 22 XRL C09 C23 C 0 1 Y N N 12.052 64.230 -17.676 2.593 0.643 1.121 C09 XRL 23 XRL C30 C24 C 0 1 N N N 10.056 65.719 -21.162 5.660 3.272 -0.112 C30 XRL 24 XRL C31 C25 C 0 1 N N N 9.503 66.245 -22.358 6.696 4.172 -0.521 C31 XRL 25 XRL N03 N1 N 0 1 Y N N 10.929 62.689 -15.149 -0.670 -0.247 0.878 N03 XRL 26 XRL N05 N2 N 0 1 Y N N 10.471 61.950 -12.957 -2.487 -0.937 -0.385 N05 XRL 27 XRL N07 N3 N 0 1 N N N 13.824 60.759 -13.838 0.322 -3.114 -1.102 N07 XRL 28 XRL N08 N4 N 0 1 N N N 8.877 63.213 -14.105 -2.693 0.918 1.020 N08 XRL 29 XRL N17 N5 N 0 1 N N N 12.856 62.310 -16.341 1.383 -1.421 0.823 N17 XRL 30 XRL N32 N6 N 0 1 N N N 9.081 66.681 -23.338 7.518 4.885 -0.845 N32 XRL 31 XRL N33 N7 N 0 1 N N N 5.889 68.127 -17.709 -8.941 2.002 -1.242 N33 XRL 32 XRL O26 O1 O 0 1 N N N 15.903 59.960 -14.080 1.802 -4.737 -0.777 O26 XRL 33 XRL H1 H1 H 0 1 N N N 11.297 65.755 -18.959 3.738 2.436 1.267 H1 XRL 34 XRL H2 H2 H 0 1 N N N 11.587 65.465 -15.966 0.841 1.541 1.944 H2 XRL 35 XRL H3 H3 H 0 1 N N N 13.308 64.962 -16.080 1.386 0.069 2.785 H3 XRL 36 XRL H4 H4 H 0 1 N N N 12.671 66.237 -17.173 2.272 1.598 3.002 H4 XRL 37 XRL H5 H5 H 0 1 N N N 5.682 66.364 -14.665 -7.038 2.073 1.662 H5 XRL 38 XRL H6 H6 H 0 1 N N N 8.522 65.904 -17.831 -5.774 1.060 -2.313 H6 XRL 39 XRL H7 H7 H 0 1 N N N 14.628 60.355 -16.636 -0.123 -3.725 1.475 H7 XRL 40 XRL H8 H8 H 0 1 N N N 16.096 61.289 -16.188 1.361 -4.686 1.669 H8 XRL 41 XRL H9 H9 H 0 1 N N N 10.963 61.798 -20.488 4.845 -0.270 -1.881 H9 XRL 42 XRL H10 H10 H 0 1 N N N 13.013 60.203 -18.890 2.203 -2.044 -2.119 H10 XRL 43 XRL H11 H11 H 0 1 N N N 11.984 60.156 -17.418 3.921 -2.455 -1.900 H11 XRL 44 XRL H12 H12 H 0 1 N N N 11.237 59.981 -19.043 2.724 -2.955 -0.681 H12 XRL 45 XRL H13 H13 H 0 1 N N N 6.795 64.567 -13.396 -4.756 1.677 2.482 H13 XRL 46 XRL H14 H14 H 0 1 N N N 9.632 64.119 -16.561 -3.495 0.668 -1.483 H14 XRL 47 XRL H15 H15 H 0 1 N N N 10.315 63.806 -21.917 6.105 1.861 -1.614 H15 XRL 48 XRL H16 H16 H 0 1 N N N 14.666 62.796 -17.230 1.349 -2.327 2.713 H16 XRL 49 XRL H17 H17 H 0 1 N N N 14.546 63.140 -15.472 2.744 -2.754 1.695 H17 XRL 50 XRL H18 H18 H 0 1 N N N 11.991 60.843 -12.053 -2.252 -2.597 -1.642 H18 XRL 51 XRL H19 H19 H 0 1 N N N 10.162 66.370 -20.307 5.027 3.522 0.727 H19 XRL 52 XRL H20 H20 H 0 1 N N N 13.881 60.322 -12.940 0.351 -3.240 -2.063 H20 XRL 53 XRL H21 H21 H 0 1 N N N 8.254 62.849 -13.413 -2.324 1.485 1.716 H21 XRL 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XRL N32 C31 TRIP N N 1 XRL C31 C30 SING N N 2 XRL C30 C27 DOUB N E 3 XRL C27 C11 SING N N 4 XRL C11 C12 DOUB Y N 5 XRL C11 C10 SING Y N 6 XRL C12 C13 SING Y N 7 XRL C10 C09 DOUB Y N 8 XRL C13 C16 SING N N 9 XRL C13 C14 DOUB Y N 10 XRL N33 C24 TRIP N N 11 XRL C09 C14 SING Y N 12 XRL C09 C15 SING N N 13 XRL C14 N17 SING N N 14 XRL C24 C21 SING N N 15 XRL C22 C21 DOUB Y N 16 XRL C22 C23 SING Y N 17 XRL N17 C29 SING N N 18 XRL N17 C02 SING N N 19 XRL C21 C20 SING Y N 20 XRL C29 C28 SING N N 21 XRL C23 C18 DOUB Y N 22 XRL C28 C25 SING N N 23 XRL C02 N03 DOUB Y N 24 XRL C02 C01 SING Y N 25 XRL N03 C04 SING Y N 26 XRL C20 C19 DOUB Y N 27 XRL C18 C19 SING Y N 28 XRL C18 N08 SING N N 29 XRL C25 O26 DOUB N N 30 XRL C25 N07 SING N N 31 XRL N08 C04 SING N N 32 XRL C04 N05 DOUB Y N 33 XRL C01 N07 SING N N 34 XRL C01 C06 DOUB Y N 35 XRL N05 C06 SING Y N 36 XRL C10 H1 SING N N 37 XRL C15 H2 SING N N 38 XRL C15 H3 SING N N 39 XRL C15 H4 SING N N 40 XRL C20 H5 SING N N 41 XRL C22 H6 SING N N 42 XRL C28 H7 SING N N 43 XRL C28 H8 SING N N 44 XRL C12 H9 SING N N 45 XRL C16 H10 SING N N 46 XRL C16 H11 SING N N 47 XRL C16 H12 SING N N 48 XRL C19 H13 SING N N 49 XRL C23 H14 SING N N 50 XRL C27 H15 SING N N 51 XRL C29 H16 SING N N 52 XRL C29 H17 SING N N 53 XRL C06 H18 SING N N 54 XRL C30 H19 SING N N 55 XRL N07 H20 SING N N 56 XRL N08 H21 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XRL SMILES ACDLabs 12.01 "N#Cc1ccc(cc1)Nc1nc2c(NC(=O)CCN2c2c(C)cc(\C=C\C#N)cc2C)cn1" XRL InChI InChI 1.06 "InChI=1S/C25H21N7O/c1-16-12-19(4-3-10-26)13-17(2)23(16)32-11-9-22(33)30-21-15-28-25(31-24(21)32)29-20-7-5-18(14-27)6-8-20/h3-8,12-13,15H,9,11H2,1-2H3,(H,30,33)(H,28,29,31)/b4-3+" XRL InChIKey InChI 1.06 CXONFCILERVPJH-ONEGZZNKSA-N XRL SMILES_CANONICAL CACTVS 3.385 "Cc1cc(/C=C/C#N)cc(C)c1N2CCC(=O)Nc3cnc(Nc4ccc(cc4)C#N)nc23" XRL SMILES CACTVS 3.385 "Cc1cc(C=CC#N)cc(C)c1N2CCC(=O)Nc3cnc(Nc4ccc(cc4)C#N)nc23" XRL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1N2CCC(=O)Nc3c2nc(nc3)Nc4ccc(cc4)C#N)C)/C=C/C#N" XRL SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1N2CCC(=O)Nc3c2nc(nc3)Nc4ccc(cc4)C#N)C)C=CC#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XRL "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]benzonitrile" XRL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[9-[4-[(~{E})-2-cyanoethenyl]-2,6-dimethyl-phenyl]-6-oxidanylidene-7,8-dihydro-5~{H}-pyrimido[4,5-b][1,4]diazepin-2-yl]amino]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XRL "Create component" 2022-12-06 RCSB XRL "Initial release" 2023-02-01 RCSB #