data_XRW # _chem_comp.id XRW _chem_comp.name "N~6~-[(2S)-2-hydroxypropanoyl]-L-lysine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 N2 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-06 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 218.250 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XRW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HLY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XRW C C1 C 0 1 N N N Y N Y -13.996 -24.842 10.786 -4.959 0.335 0.113 C XRW 1 XRW CB C2 C 0 1 N N N N N N -12.124 -23.255 10.539 -2.480 0.345 0.034 CB XRW 2 XRW CA C3 C 0 1 N N S Y N N -12.504 -24.736 10.550 -3.728 -0.534 0.141 CA XRW 3 XRW N N1 N 0 1 N N N Y Y N -12.191 -25.359 9.283 -3.765 -1.472 -0.990 N XRW 4 XRW O O1 O 0 1 N N N Y N Y -14.743 -24.402 9.983 -5.592 0.453 -0.909 O XRW 5 XRW CE C4 C 0 1 N N N N N N -11.120 -20.758 12.852 1.268 -0.514 0.233 CE XRW 6 XRW C22 C5 C 0 1 N N N N N N -11.275 -18.491 14.034 3.687 -0.226 0.236 C22 XRW 7 XRW C24 C6 C 0 1 N N S N N N -11.007 -16.988 14.011 4.917 0.640 0.130 C24 XRW 8 XRW CG C7 C 0 1 N N N N N N -12.473 -22.599 11.881 -1.230 -0.524 0.187 CG XRW 9 XRW CD C8 C 0 1 N N N N N N -12.204 -21.096 11.838 0.018 0.354 0.080 CD XRW 10 XRW C25 C9 C 0 1 N N N N N N -9.505 -16.725 13.934 4.939 1.330 -1.235 C25 XRW 11 XRW NZ N2 N 0 1 N N N N N N -10.927 -19.322 12.899 2.463 0.327 0.130 NZ XRW 12 XRW O23 O2 O 0 1 N N N N N N -11.790 -18.985 14.982 3.800 -1.420 0.416 O23 XRW 13 XRW O26 O3 O 0 1 N N N N N N -11.515 -16.422 15.191 6.084 -0.171 0.274 O26 XRW 14 XRW OXT O4 O 0 1 N Y N Y N Y -14.477 -25.479 11.993 -5.354 0.974 1.225 OXT XRW 15 XRW HB3 H1 H 0 1 N N N N N N -11.043 -23.160 10.361 -2.464 0.836 -0.939 HB3 XRW 16 XRW HB2 H2 H 0 1 N N N N N N -12.674 -22.746 9.734 -2.498 1.098 0.821 HB2 XRW 17 XRW HA H3 H 0 1 N N N Y N N -11.968 -25.241 11.367 -3.699 -1.094 1.076 HA XRW 18 XRW H H4 H 0 1 N N N Y Y N -12.448 -26.325 9.314 -4.545 -2.106 -0.908 H XRW 19 XRW H2 H5 H 0 1 N Y N Y Y N -12.699 -24.902 8.553 -3.792 -0.977 -1.869 H2 XRW 20 XRW HE2 H7 H 0 1 N N N N N N -11.423 -21.119 13.846 1.252 -1.005 1.206 HE2 XRW 21 XRW HE3 H8 H 0 1 N N N N N N -10.178 -21.244 12.557 1.286 -1.268 -0.554 HE3 XRW 22 XRW H241 H9 H 0 0 N N N N N N -11.494 -16.550 13.127 4.899 1.393 0.918 H241 XRW 23 XRW HG2 H10 H 0 1 N N N N N N -13.538 -22.768 12.099 -1.246 -1.015 1.160 HG2 XRW 24 XRW HG3 H11 H 0 1 N N N N N N -11.860 -23.052 12.674 -1.212 -1.278 -0.601 HG3 XRW 25 XRW HD2 H12 H 0 1 N N N N N N -11.869 -20.810 10.830 0.000 1.108 0.867 HD2 XRW 26 XRW HD3 H13 H 0 1 N N N N N N -13.125 -20.549 12.087 0.034 0.846 -0.893 HD3 XRW 27 XRW H252 H14 H 0 0 N N N N N N -9.322 -15.640 13.918 4.957 0.576 -2.023 H252 XRW 28 XRW H253 H15 H 0 0 N N N N N N -9.010 -17.167 14.811 4.048 1.948 -1.344 H253 XRW 29 XRW H251 H16 H 0 0 N N N N N N -9.100 -17.178 13.017 5.828 1.956 -1.311 H251 XRW 30 XRW HZ2 H17 H 0 1 N N N N N N -10.528 -18.877 12.097 2.373 1.282 -0.014 HZ2 XRW 31 XRW H261 H18 H 0 0 N N N N N N -11.889 -17.105 15.735 6.915 0.321 0.216 H261 XRW 32 XRW HXT H19 H 0 1 N Y N Y N Y -15.427 -25.468 12.000 -6.149 1.520 1.158 HXT XRW 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XRW N CA SING N N 1 XRW O C DOUB N N 2 XRW CB CA SING N N 3 XRW CB CG SING N N 4 XRW CA C SING N N 5 XRW CD CG SING N N 6 XRW CD CE SING N N 7 XRW CE NZ SING N N 8 XRW NZ C22 SING N N 9 XRW C25 C24 SING N N 10 XRW C24 C22 SING N N 11 XRW C24 O26 SING N N 12 XRW C22 O23 DOUB N N 13 XRW C OXT SING N N 14 XRW CB HB3 SING N N 15 XRW CB HB2 SING N N 16 XRW CA HA SING N N 17 XRW N H SING N N 18 XRW N H2 SING N N 19 XRW CE HE2 SING N N 20 XRW CE HE3 SING N N 21 XRW C24 H241 SING N N 22 XRW CG HG2 SING N N 23 XRW CG HG3 SING N N 24 XRW CD HD2 SING N N 25 XRW CD HD3 SING N N 26 XRW C25 H252 SING N N 27 XRW C25 H253 SING N N 28 XRW C25 H251 SING N N 29 XRW NZ HZ2 SING N N 30 XRW O26 H261 SING N N 31 XRW OXT HXT SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XRW SMILES ACDLabs 12.01 "O=C(NCCCCC(N)C(=O)O)C(C)O" XRW InChI InChI 1.06 "InChI=1S/C9H18N2O4/c1-6(12)8(13)11-5-3-2-4-7(10)9(14)15/h6-7,12H,2-5,10H2,1H3,(H,11,13)(H,14,15)/t6-,7-/m0/s1" XRW InChIKey InChI 1.06 TVFTZQHBUQYHFH-BQBZGAKWSA-N XRW SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)C(=O)NCCCC[C@H](N)C(O)=O" XRW SMILES CACTVS 3.385 "C[CH](O)C(=O)NCCCC[CH](N)C(O)=O" XRW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)NCCCC[C@@H](C(=O)O)N)O" XRW SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)NCCCCC(C(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XRW "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-[(2S)-2-hydroxypropanoyl]-L-lysine" XRW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-6-[[(2~{S})-2-oxidanylpropanoyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XRW "Create component" 2022-12-06 RCSB XRW "Modify backbone" 2024-09-25 PDBE XRW "Modify PCM" 2024-09-27 PDBE XRW "Initial release" 2025-04-23 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XRW _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Lactoylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0682 #