data_XS0 # _chem_comp.id XS0 _chem_comp.name namodenoson _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 Cl I N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide; CF102; Cl-IB-MECA" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-09 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.731 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XS0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X17 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XS0 N12 N1 N 0 1 Y N N N N N 125.649 98.491 82.181 -1.256 -0.698 0.910 N12 XS0 1 XS0 C13 C1 C 0 1 Y N N N N N 125.240 97.243 81.856 -1.028 0.601 0.599 C13 XS0 2 XS0 C21 C2 C 0 1 N N N N N N 126.890 96.205 78.816 2.546 1.771 0.775 C21 XS0 3 XS0 C22 C3 C 0 1 Y N N N N N 127.428 94.744 78.412 3.772 0.979 1.151 C22 XS0 4 XS0 C24 C4 C 0 1 Y N N N N N 127.089 92.431 77.971 5.615 -0.414 0.521 C24 XS0 5 XS0 C26 C5 C 0 1 Y N N N N N 129.303 93.371 77.785 5.305 0.197 2.816 C26 XS0 6 XS0 CL19 CL1 CL 0 0 N N N N N N 122.998 93.280 81.468 -1.341 4.854 -0.566 CL19 XS0 7 XS0 C01 C6 C 0 1 N N N N N N 122.184 103.567 86.692 -9.082 -3.789 0.403 C01 XS0 8 XS0 N02 N2 N 0 1 N N N N N N 121.540 102.230 86.255 -8.469 -2.496 0.090 N02 XS0 9 XS0 C03 C7 C 0 1 N N N N N N 122.381 101.121 85.780 -7.260 -2.183 0.595 C03 XS0 10 XS0 O04 O1 O 0 1 N N N N N N 123.570 101.269 85.729 -6.679 -2.972 1.310 O04 XS0 11 XS0 C05 C8 C 0 1 N N S N N N 121.791 99.833 85.338 -6.629 -0.852 0.273 C05 XS0 12 XS0 C06 C9 C 0 1 N N S N N N 122.189 98.660 86.336 -6.313 -0.758 -1.236 C06 XS0 13 XS0 C07 C10 C 0 1 N N R N N N 122.550 97.658 85.610 -4.974 0.009 -1.292 C07 XS0 14 XS0 C08 C11 C 0 1 N N R N N N 122.607 98.158 84.049 -4.639 0.288 0.190 C08 XS0 15 XS0 O09 O2 O 0 1 N N N N N N 122.538 99.478 84.054 -5.347 -0.732 0.927 O09 XS0 16 XS0 N10 N3 N 0 1 Y N N N N N 123.798 98.071 83.202 -3.196 0.172 0.417 N10 XS0 17 XS0 C11 C12 C 0 1 Y N N N N N 124.778 98.986 83.009 -2.528 -0.951 0.804 C11 XS0 18 XS0 C14 C13 C 0 1 Y N N N N N 125.745 96.205 81.032 0.116 1.416 0.539 C14 XS0 19 XS0 N15 N4 N 0 1 Y N N N N N 125.101 95.084 80.917 -0.031 2.688 0.183 N15 XS0 20 XS0 C16 C14 C 0 1 Y N N N N N 123.959 94.901 81.592 -1.221 3.184 -0.109 C16 XS0 21 XS0 N17 N5 N 0 1 Y N N N N N 123.461 95.840 82.367 -2.319 2.457 -0.066 N17 XS0 22 XS0 C18 C15 C 0 1 Y N N N N N 124.088 97.007 82.496 -2.269 1.174 0.279 C18 XS0 23 XS0 N20 N6 N 0 1 N N N N N N 126.974 96.424 80.311 1.366 0.906 0.843 N20 XS0 24 XS0 C23 C16 C 0 1 Y N N N N N 126.576 93.664 78.326 4.490 0.312 0.176 C23 XS0 25 XS0 C25 C17 C 0 1 Y N N N N N 128.443 92.272 77.699 6.021 -0.474 1.842 C25 XS0 26 XS0 C27 C18 C 0 1 Y N N N N N 128.806 94.582 78.128 4.181 0.924 2.471 C27 XS0 27 XS0 O29 O3 O 0 1 N N N N N N 121.652 96.553 85.670 -5.129 1.235 -2.010 O29 XS0 28 XS0 O30 O4 O 0 1 N N N N N N 121.101 98.324 87.138 -7.337 -0.030 -1.917 O30 XS0 29 XS0 I28 I1 I 0 1 N N N N N N 125.837 90.734 77.820 6.703 -1.425 -0.956 I28 XS0 30 XS0 H1 H1 H 0 1 N N N N N N 127.500 96.966 78.307 2.426 2.605 1.467 H1 XS0 31 XS0 H2 H2 H 0 1 N N N N N N 125.842 96.302 78.497 2.658 2.154 -0.239 H2 XS0 32 XS0 H3 H3 H 0 1 N N N N N N 130.357 93.254 77.579 5.625 0.154 3.847 H3 XS0 33 XS0 H4 H4 H 0 1 N N N N N N 121.397 104.266 87.012 -9.217 -3.875 1.481 H4 XS0 34 XS0 H5 H5 H 0 1 N N N N N N 122.875 103.385 87.528 -10.051 -3.861 -0.092 H5 XS0 35 XS0 H6 H6 H 0 1 N N N N N N 122.738 104.001 85.846 -8.434 -4.592 0.052 H6 XS0 36 XS0 H7 H7 H 0 1 N N N N N N 120.547 102.119 86.296 -8.934 -1.864 -0.482 H7 XS0 37 XS0 H8 H8 H 0 1 N N N N N N 120.702 99.884 85.190 -7.288 -0.038 0.575 H8 XS0 38 XS0 H9 H9 H 0 1 N N N N N N 123.017 99.027 86.961 -6.204 -1.754 -1.666 H9 XS0 39 XS0 H10 H10 H 0 1 N N N N N N 123.563 97.318 85.870 -4.200 -0.606 -1.752 H10 XS0 40 XS0 H11 H11 H 0 1 N N N N N N 121.750 97.706 83.527 -4.991 1.278 0.479 H11 XS0 41 XS0 H12 H12 H 0 1 N N N N N N 124.827 99.963 83.466 -2.986 -1.911 0.994 H12 XS0 42 XS0 H13 H13 H 0 1 N N N N N N 127.663 95.799 80.677 1.460 -0.024 1.102 H13 XS0 43 XS0 H14 H14 H 0 1 N N N N N N 125.522 93.780 78.533 4.172 0.359 -0.855 H14 XS0 44 XS0 H15 H15 H 0 1 N N N N N N 128.829 91.302 77.422 6.899 -1.041 2.112 H15 XS0 45 XS0 H16 H16 H 0 1 N N N N N N 129.467 95.434 78.186 3.622 1.448 3.232 H16 XS0 46 XS0 H17 H17 H 0 1 N N N N N N 121.596 96.238 86.565 -5.398 1.120 -2.931 H17 XS0 47 XS0 H18 H18 H 0 1 N N N N N N 121.348 97.623 87.730 -8.212 -0.437 -1.862 H18 XS0 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XS0 C25 C26 DOUB Y N 1 XS0 C25 C24 SING Y N 2 XS0 C26 C27 SING Y N 3 XS0 I28 C24 SING N N 4 XS0 C24 C23 DOUB Y N 5 XS0 C27 C22 DOUB Y N 6 XS0 C23 C22 SING Y N 7 XS0 C22 C21 SING N N 8 XS0 C21 N20 SING N N 9 XS0 N20 C14 SING N N 10 XS0 N15 C14 DOUB Y N 11 XS0 N15 C16 SING Y N 12 XS0 C14 C13 SING Y N 13 XS0 CL19 C16 SING N N 14 XS0 C16 N17 DOUB Y N 15 XS0 C13 N12 SING Y N 16 XS0 C13 C18 DOUB Y N 17 XS0 N12 C11 DOUB Y N 18 XS0 N17 C18 SING Y N 19 XS0 C18 N10 SING Y N 20 XS0 C11 N10 SING Y N 21 XS0 N10 C08 SING N N 22 XS0 C08 O09 SING N N 23 XS0 C08 C07 SING N N 24 XS0 O09 C05 SING N N 25 XS0 C05 C03 SING N N 26 XS0 C05 C06 SING N N 27 XS0 C07 O29 SING N N 28 XS0 C07 C06 SING N N 29 XS0 O04 C03 DOUB N N 30 XS0 C03 N02 SING N N 31 XS0 N02 C01 SING N N 32 XS0 C06 O30 SING N N 33 XS0 C21 H1 SING N N 34 XS0 C21 H2 SING N N 35 XS0 C26 H3 SING N N 36 XS0 C01 H4 SING N N 37 XS0 C01 H5 SING N N 38 XS0 C01 H6 SING N N 39 XS0 N02 H7 SING N N 40 XS0 C05 H8 SING N N 41 XS0 C06 H9 SING N N 42 XS0 C07 H10 SING N N 43 XS0 C08 H11 SING N N 44 XS0 C11 H12 SING N N 45 XS0 N20 H13 SING N N 46 XS0 C23 H14 SING N N 47 XS0 C25 H15 SING N N 48 XS0 C27 H16 SING N N 49 XS0 O29 H17 SING N N 50 XS0 O30 H18 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XS0 InChI InChI 1.06 "InChI=1S/C18H18ClIN6O4/c1-21-16(29)13-11(27)12(28)17(30-13)26-7-23-10-14(24-18(19)25-15(10)26)22-6-8-3-2-4-9(20)5-8/h2-5,7,11-13,17,27-28H,6H2,1H3,(H,21,29)(H,22,24,25)/t11-,12+,13-,17+/m0/s1" XS0 InChIKey InChI 1.06 IPSYPUKKXMNCNQ-PFHKOEEOSA-N XS0 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(NCc4cccc(I)c4)nc(Cl)nc23" XS0 SMILES CACTVS 3.385 "CNC(=O)[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(NCc4cccc(I)c4)nc(Cl)nc23" XS0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2nc(nc3NCc4cccc(c4)I)Cl)O)O" XS0 SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C1C(C(C(O1)n2cnc3c2nc(nc3NCc4cccc(c4)I)Cl)O)O" # _pdbx_chem_comp_identifier.comp_id XS0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XS0 "Create component" 2023-11-09 PDBJ XS0 "Initial release" 2024-04-24 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 XS0 "(2~{S},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(3-iodanylphenyl)methylamino]purin-9-yl]-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide" PDB ? 2 XS0 CF102 CHEMBL ? 3 XS0 Cl-IB-MECA CHEMBL ? #