data_XSH # _chem_comp.id XSH _chem_comp.name "~{N}-[(2~{R})-1-[4-[[2,4-bis(azanyl)quinazolin-5-yl]oxymethyl]piperidin-1-yl]-1-oxidanylidene-pent-4-yn-2-yl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-09 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.470 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XSH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R3I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag XSH N1 N1 N 0 1 N N N 11.557 -11.002 14.585 7.602 2.676 -0.020 N1 XSH 1 N N N XSH C1 C1 C 0 1 Y N N 10.612 -11.925 14.468 6.578 1.747 0.024 C1 XSH 2 N N N XSH N2 N2 N 0 1 Y N N 9.375 -11.590 14.923 5.393 2.081 -0.477 N2 XSH 3 N N N XSH C2 C2 C 0 1 Y N N 8.394 -12.474 14.803 4.374 1.233 -0.464 C2 XSH 4 N N N XSH C3 C3 C 0 1 Y N N 8.615 -13.786 14.226 4.574 -0.049 0.100 C3 XSH 5 N N N XSH C4 C4 C 0 1 Y N N 7.641 -14.840 14.079 3.548 -1.007 0.154 C4 XSH 6 N N N XSH C5 C5 C 0 1 Y N N 7.983 -16.042 13.511 3.806 -2.241 0.717 C5 XSH 7 N N N XSH C6 C6 C 0 1 Y N N 9.307 -16.256 13.096 5.063 -2.539 1.228 C6 XSH 8 N N N XSH C7 C7 C 0 1 Y N N 10.268 -15.289 13.218 6.075 -1.625 1.187 C7 XSH 9 N N N XSH C8 C8 C 0 1 Y N N 9.950 -14.050 13.810 5.852 -0.362 0.623 C8 XSH 10 N N N XSH N3 N3 N 0 1 Y N N 10.950 -13.103 13.900 6.821 0.564 0.558 N3 XSH 11 N N N XSH O1 O1 O 0 1 N N N 6.388 -14.587 14.509 2.318 -0.722 -0.343 O1 XSH 12 N N N XSH C9 C9 C 0 1 N N N 5.375 -15.615 14.519 1.328 -1.749 -0.251 C9 XSH 13 N N N XSH C10 C10 C 0 1 N N N 4.020 -14.983 14.775 0.016 -1.248 -0.857 C10 XSH 14 N N N XSH C11 C11 C 0 1 N N N 2.915 -16.031 14.654 -1.007 -2.387 -0.873 C11 XSH 15 N N N XSH C12 C12 C 0 1 N N N 1.562 -15.458 15.037 -2.307 -1.891 -1.512 C12 XSH 16 N N N XSH N4 N4 N 0 1 N N N 1.597 -14.934 16.412 -2.756 -0.688 -0.799 N4 XSH 17 N N N XSH C13 C13 C 0 1 N N N 2.591 -13.859 16.588 -1.819 0.434 -0.648 C13 XSH 18 N N N XSH C14 C14 C 0 1 N N N 3.981 -14.310 16.155 -0.524 -0.087 -0.018 C14 XSH 19 N N N XSH C15 C15 C 0 1 N N N 0.871 -15.361 17.474 -4.004 -0.613 -0.294 C15 XSH 20 N N N XSH O2 O2 O 0 1 N N N 0.757 -14.672 18.502 -4.768 -1.546 -0.426 O2 XSH 21 N N N XSH C16 C16 C 0 1 N N R 0.211 -16.738 17.583 -4.449 0.628 0.434 C16 XSH 22 N N N XSH C17 C17 C 0 1 N N N 0.392 -17.889 16.601 -4.837 1.704 -0.582 C17 XSH 23 N N N XSH C18 C18 C 0 1 N N N -0.837 -18.082 15.817 -5.157 2.955 0.126 C18 XSH 24 N N N XSH C19 C19 C 0 1 N N N -1.762 -18.450 15.166 -5.412 3.952 0.690 C19 XSH 25 N N N XSH N5 N5 N 0 1 N N N 0.735 -17.175 18.875 -5.605 0.312 1.276 N5 XSH 26 N N N XSH C20 C20 C 0 1 N N N 1.915 -17.753 19.115 -6.737 -0.161 0.718 C20 XSH 27 N N N XSH O3 O3 O 0 1 N N N 2.789 -17.954 18.242 -6.798 -0.325 -0.482 O3 XSH 28 N N N XSH C21 C21 C 0 1 N N N 2.042 -18.180 20.566 -7.926 -0.486 1.584 C21 XSH 29 N N N XSH N6 N6 N 0 1 N N N 7.204 -12.062 15.255 3.150 1.591 -0.987 N6 XSH 30 N N N XSH H1 H1 H 0 1 N N N 11.172 -10.182 15.009 7.447 3.550 -0.411 H1 XSH 31 N N N XSH H2 H2 H 0 1 N N N 12.299 -11.355 15.155 8.474 2.455 0.344 H2 XSH 32 N N N XSH H3 H3 H 0 1 N N N 7.240 -16.816 13.385 3.021 -2.982 0.761 H3 XSH 33 N N N XSH H4 H4 H 0 1 N N N 9.575 -17.211 12.668 5.242 -3.510 1.665 H4 XSH 34 N N N XSH H5 H5 H 0 1 N N N 11.270 -15.475 12.861 7.046 -1.874 1.589 H5 XSH 35 N N N XSH H7 H6 H 0 1 N N N 5.363 -16.128 13.546 1.667 -2.630 -0.796 H7 XSH 36 N N N XSH H6 H7 H 0 1 N N N 5.597 -16.342 15.314 1.169 -2.008 0.796 H6 XSH 37 N N N XSH H8 H8 H 0 1 N N N 3.847 -14.210 14.011 0.194 -0.906 -1.877 H8 XSH 38 N N N XSH H10 H9 H 0 1 N N N 2.871 -16.386 13.614 -0.612 -3.222 -1.451 H10 XSH 39 N N N XSH H9 H10 H 0 1 N N N 3.148 -16.875 15.320 -1.204 -2.712 0.149 H9 XSH 40 N N N XSH H12 H11 H 0 1 N N N 1.305 -14.643 14.345 -2.131 -1.651 -2.560 H12 XSH 41 N N N XSH H11 H12 H 0 1 N N N 0.801 -16.250 14.970 -3.070 -2.667 -1.436 H11 XSH 42 N N N XSH H14 H13 H 0 1 N N N 2.291 -12.992 15.982 -1.603 0.864 -1.625 H14 XSH 43 N N N XSH H13 H14 H 0 1 N N N 2.623 -13.571 17.649 -2.260 1.193 -0.001 H13 XSH 44 N N N XSH H15 H15 H 0 1 N N N 4.359 -15.026 16.899 -0.726 -0.435 0.995 H15 XSH 45 N N N XSH H16 H16 H 0 1 N N N 4.638 -13.428 16.128 0.215 0.714 0.012 H16 XSH 46 N N N XSH H17 H17 H 0 1 N N N -0.871 -16.571 17.694 -3.634 0.995 1.059 H17 XSH 47 N N N XSH H19 H18 H 0 1 N N N 1.225 -17.659 15.921 -4.005 1.876 -1.265 H19 XSH 48 N N N XSH H18 H19 H 0 1 N N N 0.617 -18.811 17.158 -5.709 1.373 -1.146 H18 XSH 49 N N N XSH H20 H20 H 0 1 N N N -2.586 -18.778 14.586 -5.640 4.844 1.195 H20 XSH 50 N N N XSH H21 H21 H 0 1 N N N 0.144 -17.025 19.668 -5.556 0.443 2.236 H21 XSH 51 N N N XSH H23 H22 H 0 1 N N N 3.008 -18.684 20.717 -8.248 0.412 2.111 H23 XSH 52 N N N XSH H22 H23 H 0 1 N N N 1.985 -17.294 21.215 -8.741 -0.853 0.960 H22 XSH 53 N N N XSH H26 H24 H 0 1 N N N 1.225 -18.872 20.817 -7.649 -1.253 2.308 H26 XSH 54 N N N XSH H24 H25 H 0 1 N N N 7.286 -11.131 15.610 2.523 0.906 -1.269 H24 XSH 55 N N N XSH H25 H26 H 0 1 N N N 6.540 -12.076 14.507 2.915 2.528 -1.074 H25 XSH 56 N N N # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XSH N1 C1 SING N N 1 XSH C1 N2 DOUB Y N 2 XSH C1 N3 SING Y N 3 XSH N2 C2 SING Y N 4 XSH C2 C3 DOUB Y N 5 XSH C2 N6 SING N N 6 XSH C3 C4 SING Y N 7 XSH C3 C8 SING Y N 8 XSH C4 C5 DOUB Y N 9 XSH C4 O1 SING N N 10 XSH C5 C6 SING Y N 11 XSH C6 C7 DOUB Y N 12 XSH C7 C8 SING Y N 13 XSH C8 N3 DOUB Y N 14 XSH O1 C9 SING N N 15 XSH C9 C10 SING N N 16 XSH C10 C11 SING N N 17 XSH C10 C14 SING N N 18 XSH C11 C12 SING N N 19 XSH C12 N4 SING N N 20 XSH N4 C13 SING N N 21 XSH N4 C15 SING N N 22 XSH C13 C14 SING N N 23 XSH C15 O2 DOUB N N 24 XSH C15 C16 SING N N 25 XSH C16 C17 SING N N 26 XSH C16 N5 SING N N 27 XSH C17 C18 SING N N 28 XSH C18 C19 TRIP N N 29 XSH N5 C20 SING N N 30 XSH C20 O3 DOUB N N 31 XSH C20 C21 SING N N 32 XSH N1 H1 SING N N 33 XSH N1 H2 SING N N 34 XSH C5 H3 SING N N 35 XSH C6 H4 SING N N 36 XSH C7 H5 SING N N 37 XSH C9 H7 SING N N 38 XSH C9 H6 SING N N 39 XSH C10 H8 SING N N 40 XSH C11 H10 SING N N 41 XSH C11 H9 SING N N 42 XSH C12 H12 SING N N 43 XSH C12 H11 SING N N 44 XSH C13 H14 SING N N 45 XSH C13 H13 SING N N 46 XSH C14 H15 SING N N 47 XSH C14 H16 SING N N 48 XSH C16 H17 SING N N 49 XSH C17 H19 SING N N 50 XSH C17 H18 SING N N 51 XSH C19 H20 SING N N 52 XSH N5 H21 SING N N 53 XSH C21 H23 SING N N 54 XSH C21 H22 SING N N 55 XSH C21 H26 SING N N 56 XSH N6 H24 SING N N 57 XSH N6 H25 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XSH InChI InChI 1.06 "InChI=1S/C21H26N6O3/c1-3-5-16(24-13(2)28)20(29)27-10-8-14(9-11-27)12-30-17-7-4-6-15-18(17)19(22)26-21(23)25-15/h1,4,6-7,14,16H,5,8-12H2,2H3,(H,24,28)(H4,22,23,25,26)/t16-/m1/s1" XSH InChIKey InChI 1.06 KEUMDTOQJJKEPR-MRXNPFEDSA-N XSH SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@H](CC#C)C(=O)N1CCC(CC1)COc2cccc3nc(N)nc(N)c23" XSH SMILES CACTVS 3.385 "CC(=O)N[CH](CC#C)C(=O)N1CCC(CC1)COc2cccc3nc(N)nc(N)c23" XSH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H](CC#C)C(=O)N1CCC(CC1)COc2cccc3c2c(nc(n3)N)N" XSH SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CC#C)C(=O)N1CCC(CC1)COc2cccc3c2c(nc(n3)N)N" # _pdbx_chem_comp_identifier.comp_id XSH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R})-1-[4-[[2,4-bis(azanyl)quinazolin-5-yl]oxymethyl]piperidin-1-yl]-1-oxidanylidene-pent-4-yn-2-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XSH "Create component" 2023-11-09 PDBE XSH "Modify PCM" 2024-09-27 PDBE XSH "Initial release" 2024-11-20 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XSH _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C21 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #