data_XSR # _chem_comp.id XSR _chem_comp.name "1-[(4aM,10P)-7-(azetidin-1-yl)-10-[2-carboxy-3,4,6-trifluoro-5-({2-[2-(hexyloxy)ethoxy]ethyl}carbamoyl)phenyl]-5,5-dimethyldibenzo[b,e]silin-3(5H)-ylidene]azetidin-1-ium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H47 F3 N3 O5 Si" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-11-09 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 722.888 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XSR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8SW8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XSR C4 C1 C 0 1 N N N N N N 82.120 51.889 8.478 7.591 2.167 1.502 C4 XSR 1 XSR C14 C2 C 0 1 Y N N N N N 71.190 44.970 5.036 -2.386 -3.525 -1.263 C14 XSR 2 XSR C5 C3 C 0 1 N N N N N N 80.738 52.245 8.956 7.203 0.691 1.608 C5 XSR 3 XSR C6 C4 C 0 1 N N N N N N 79.738 51.114 8.870 6.852 0.154 0.219 C6 XSR 4 XSR C11 C5 C 0 1 N N N N N N 74.223 47.089 5.921 0.586 -3.916 1.018 C11 XSR 5 XSR C7 C6 C 0 1 N N N N N N 79.933 48.753 9.101 6.142 -1.826 -0.930 C7 XSR 6 XSR C8 C7 C 0 1 N N N N N N 78.493 48.424 9.239 5.774 -3.293 -0.705 C8 XSR 7 XSR C9 C8 C 0 1 N N N N N N 76.721 47.349 8.038 4.160 -4.706 0.366 C9 XSR 8 XSR C10 C9 C 0 1 N N N N N N 76.479 46.658 6.714 2.894 -4.668 1.224 C10 XSR 9 XSR C12 C10 C 0 1 Y N N N N N 72.808 46.584 5.780 -0.514 -3.298 0.247 C12 XSR 10 XSR C13 C11 C 0 1 Y N N N N N 72.501 45.385 5.163 -1.351 -4.097 -0.537 C13 XSR 11 XSR N1 N1 N 0 1 N N N N N N 75.082 46.288 6.542 1.804 -4.056 0.460 N1 XSR 12 XSR N2 N2 N 0 1 N N N N N N 68.296 46.222 12.199 0.914 2.862 -4.357 N2 XSR 13 XSR C3 C12 C 0 1 N N N N N N 82.850 53.058 7.900 7.942 2.704 2.891 C3 XSR 14 XSR N3 N3 N 1 1 N N N N N N 67.048 51.827 3.614 -5.420 1.528 3.696 N3 XSR 15 XSR C1 C13 C 0 1 N N N N N N 85.041 54.040 7.326 8.681 4.717 4.173 C1 XSR 16 XSR C2 C14 C 0 1 N N N N N N 84.270 52.786 7.571 8.330 4.180 2.784 C2 XSR 17 XSR O1 O1 O 0 1 N N N N N N 80.194 50.035 9.659 6.490 -1.224 0.319 O1 XSR 18 XSR O2 O2 O 0 1 N N N N N N 78.104 47.673 8.092 4.592 -3.371 0.095 O2 XSR 19 XSR O3 O3 O 0 1 N N N N N N 74.538 48.197 5.486 0.391 -4.297 2.155 O3 XSR 20 XSR F1 F1 F 0 1 N N N N N N 73.481 44.613 4.669 -1.152 -5.433 -0.588 F1 XSR 21 XSR F2 F2 F 0 1 N N N N N N 70.923 43.804 4.422 -3.194 -4.305 -2.014 F2 XSR 22 XSR C15 C15 C 0 1 Y N N N N N 70.144 45.748 5.526 -2.598 -2.149 -1.216 C15 XSR 23 XSR C16 C16 C 0 1 N N N N N N 68.713 45.279 5.383 -3.700 -1.543 -1.989 C16 XSR 24 XSR O4 O4 O 0 1 N N N N N N 68.290 44.455 6.212 -3.487 -1.124 -3.252 O4 XSR 25 XSR O5 O5 O 0 1 N N N N N N 68.017 45.772 4.444 -4.799 -1.421 -1.486 O5 XSR 26 XSR C17 C17 C 0 1 Y N N N N N 70.446 46.970 6.155 -1.756 -1.335 -0.426 C17 XSR 27 XSR C18 C18 C 0 1 N N N N N N 69.397 47.835 6.839 -1.973 0.117 -0.371 C18 XSR 28 XSR C19 C19 C 0 1 Y N N N N N 69.107 47.478 8.196 -1.235 0.832 -1.393 C19 XSR 29 XSR C20 C20 C 0 1 Y N N N N N 69.651 46.275 8.730 -0.418 0.132 -2.302 C20 XSR 30 XSR C21 C21 C 0 1 Y N N N N N 69.385 45.865 10.017 0.275 0.808 -3.262 C21 XSR 31 XSR C22 C22 C 0 1 Y N N N N N 68.564 46.630 10.857 0.197 2.195 -3.371 C22 XSR 32 XSR C23 C23 C 0 1 N N N N N N 67.360 46.788 13.172 1.810 3.874 -3.766 C23 XSR 33 XSR C24 C24 C 0 1 N N N N N N 67.963 45.701 14.133 1.408 4.817 -4.908 C24 XSR 34 XSR C25 C25 C 0 1 N N N N N N 68.900 45.151 12.997 0.125 3.973 -4.923 C25 XSR 35 XSR C26 C26 C 0 1 Y N N N N N 68.013 47.811 10.346 -0.609 2.910 -2.477 C26 XSR 36 XSR C27 C27 C 0 1 Y N N N N N 68.290 48.240 9.046 -1.291 2.238 -1.533 C27 XSR 37 XSR SI1 SI1 SI 0 0 N N N N N N 67.510 49.779 8.462 -2.408 3.091 -0.274 SI1 XSR 38 XSR C29 C28 C 0 1 N N N N N N 65.637 49.713 8.703 -1.396 4.300 0.718 C29 XSR 39 XSR C30 C29 C 0 1 N N N N N N 68.189 51.234 9.436 -3.748 4.017 -1.178 C30 XSR 40 XSR C31 C30 C 0 1 N N N N N N 67.949 49.820 6.628 -3.204 1.844 0.899 C31 XSR 41 XSR C32 C31 C 0 1 N N N N N N 67.369 50.781 5.799 -4.035 2.207 1.875 C32 XSR 42 XSR C33 C32 C 0 1 N N N N N N 67.661 50.833 4.430 -4.592 1.201 2.716 C33 XSR 43 XSR C34 C33 C 0 1 N N N N N N 67.282 52.167 2.201 -5.982 2.798 4.195 C34 XSR 44 XSR C35 C34 C 0 1 N N N N N N 66.036 53.126 2.400 -7.145 1.949 4.740 C35 XSR 45 XSR C36 C35 C 0 1 N N N N N N 65.917 52.730 3.925 -6.158 0.768 4.724 C36 XSR 46 XSR C37 C36 C 0 1 N N N N N N 68.500 49.870 3.879 -4.247 -0.156 2.489 C37 XSR 47 XSR C38 C37 C 0 1 N N N N N N 69.060 48.900 4.669 -3.403 -0.503 1.494 C38 XSR 48 XSR C39 C38 C 0 1 N N N N N N 68.787 48.846 6.060 -2.842 0.489 0.644 C39 XSR 49 XSR C40 C39 C 0 1 Y N N N N N 71.753 47.332 6.276 -0.714 -1.917 0.304 C40 XSR 50 XSR F3 F3 F 0 1 N N N N N N 72.040 48.484 6.924 0.095 -1.146 1.062 F3 XSR 51 XSR H8 H1 H 0 1 N N N N N N 82.035 51.110 7.706 8.454 2.270 0.844 H8 XSR 52 XSR H9 H2 H 0 1 N N N N N N 82.697 51.500 9.330 6.754 2.734 1.094 H9 XSR 53 XSR H10 H3 H 0 1 N N N N N N 80.808 52.563 10.007 8.040 0.124 2.016 H10 XSR 54 XSR H11 H4 H 0 1 N N N N N N 80.367 53.080 8.344 6.340 0.589 2.266 H11 XSR 55 XSR H12 H5 H 0 1 N N N N N N 78.761 51.456 9.243 6.015 0.721 -0.189 H12 XSR 56 XSR H13 H6 H 0 1 N N N N N N 79.638 50.789 7.824 7.715 0.257 -0.439 H13 XSR 57 XSR H15 H7 H 0 1 N N N N N N 80.532 47.997 9.630 6.990 -1.764 -1.612 H15 XSR 58 XSR H14 H8 H 0 1 N N N N N N 80.205 48.757 8.035 5.290 -1.300 -1.362 H14 XSR 59 XSR H17 H9 H 0 1 N N N N N N 77.902 49.350 9.298 5.595 -3.775 -1.666 H17 XSR 60 XSR H16 H10 H 0 1 N N N N N N 78.331 47.827 10.149 6.593 -3.799 -0.192 H16 XSR 61 XSR H19 H11 H 0 1 N N N N N N 76.116 48.265 8.102 4.945 -5.240 0.900 H19 XSR 62 XSR H18 H12 H 0 1 N N N N N N 76.458 46.677 8.868 3.947 -5.217 -0.573 H18 XSR 63 XSR H21 H13 H 0 1 N N N N N N 77.096 45.748 6.670 2.615 -5.683 1.505 H21 XSR 64 XSR H20 H14 H 0 1 N N N N N N 76.770 47.338 5.900 3.082 -4.081 2.123 H20 XSR 65 XSR H22 H15 H 0 1 N N N N N N 74.761 45.411 6.899 1.960 -3.751 -0.448 H22 XSR 66 XSR H6 H16 H 0 1 N N N N N N 82.816 53.881 8.630 7.079 2.602 3.549 H6 XSR 67 XSR H7 H17 H 0 1 N N N N N N 82.335 53.365 6.978 8.779 2.137 3.298 H7 XSR 68 XSR H2 H18 H 0 1 N N N N N N 86.085 53.788 7.087 7.818 4.615 4.831 H2 XSR 69 XSR H3 H19 H 0 1 N Y N N N N 84.593 54.587 6.483 9.518 4.150 4.581 H3 XSR 70 XSR H1 H20 H 0 1 N N N N N N 85.013 54.669 8.228 8.957 5.769 4.097 H1 XSR 71 XSR H4 H21 H 0 1 N N N N N N 84.311 52.162 6.666 9.193 4.283 2.126 H4 XSR 72 XSR H5 H22 H 0 1 N N N N N N 84.731 52.245 8.410 7.493 4.747 2.376 H5 XSR 73 XSR H47 H23 H 0 1 N N N N N N 67.378 44.260 6.029 -4.238 -0.734 -3.718 H47 XSR 74 XSR H23 H25 H 0 1 N N N N N N 70.291 45.667 8.107 -0.340 -0.943 -2.238 H23 XSR 75 XSR H24 H26 H 0 1 N N N N N N 69.814 44.944 10.383 0.898 0.257 -3.952 H24 XSR 76 XSR H26 H27 H 0 1 N N N N N N 67.552 47.832 13.460 1.487 4.219 -2.783 H26 XSR 77 XSR H25 H28 H 0 1 N N N N N N 66.294 46.665 12.929 2.862 3.588 -3.788 H25 XSR 78 XSR H28 H29 H 0 1 N N N N N N 67.225 44.968 14.491 1.257 5.852 -4.600 H28 XSR 79 XSR H27 H30 H 0 1 N N N N N N 68.508 46.122 14.991 2.020 4.719 -5.804 H27 XSR 80 XSR H29 H31 H 0 1 N N N N N N 68.681 44.128 12.658 -0.250 3.771 -5.926 H29 XSR 81 XSR H30 H32 H 0 1 N N N N N N 69.979 45.252 13.184 -0.647 4.344 -4.249 H30 XSR 82 XSR H31 H33 H 0 1 N N N N N N 67.360 48.403 10.970 -0.683 3.985 -2.544 H31 XSR 83 XSR H32 H34 H 0 1 N N N N N N 65.406 49.690 9.778 -0.961 5.044 0.051 H32 XSR 84 XSR H33 H35 H 0 1 N N N N N N 65.177 50.603 8.248 -2.035 4.797 1.448 H33 XSR 85 XSR H34 H36 H 0 1 N N N N N N 65.237 48.808 8.223 -0.599 3.767 1.237 H34 XSR 86 XSR H37 H37 H 0 1 N N N N N N 67.893 51.140 10.491 -3.296 4.751 -1.845 H37 XSR 87 XSR H35 H38 H 0 1 N N N N N N 69.287 51.244 9.363 -4.345 3.315 -1.761 H35 XSR 88 XSR H36 H39 H 0 1 N N N N N N 67.786 52.171 9.024 -4.388 4.526 -0.457 H36 XSR 89 XSR H38 H40 H 0 1 N N N N N N 66.681 51.499 6.221 -4.281 3.247 2.028 H38 XSR 90 XSR H39 H41 H 0 1 N N N N N N 67.135 51.344 1.487 -5.380 3.269 4.973 H39 XSR 91 XSR H40 H42 H 0 1 N N N N N N 68.236 52.671 1.988 -6.275 3.490 3.405 H40 XSR 92 XSR H41 H43 H 0 1 N N N N N N 66.265 54.189 2.235 -7.468 2.238 5.740 H41 XSR 93 XSR H42 H44 H 0 1 N N N N N N 65.159 52.843 1.799 -7.973 1.839 4.040 H42 XSR 94 XSR H44 H45 H 0 1 N N N N N N 66.138 53.535 4.641 -6.595 -0.160 4.355 H44 XSR 95 XSR H43 H46 H 0 1 N N N N N N 64.979 52.232 4.212 -5.606 0.639 5.655 H43 XSR 96 XSR H45 H47 H 0 1 N N N N N N 68.712 49.887 2.820 -4.666 -0.924 3.122 H45 XSR 97 XSR H46 H48 H 0 1 N N N N N N 69.718 48.167 4.226 -3.155 -1.543 1.340 H46 XSR 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XSR C34 C35 SING N N 1 XSR C34 N3 SING N N 2 XSR C35 C36 SING N N 3 XSR N3 C36 SING N N 4 XSR N3 C33 DOUB N N 5 XSR C37 C33 SING N N 6 XSR C37 C38 DOUB N N 7 XSR F2 C14 SING N N 8 XSR C33 C32 SING N N 9 XSR O5 C16 DOUB N N 10 XSR C38 C39 SING N N 11 XSR F1 C13 SING N N 12 XSR C14 C13 DOUB Y N 13 XSR C14 C15 SING Y N 14 XSR C13 C12 SING Y N 15 XSR C16 C15 SING N N 16 XSR C16 O4 SING N N 17 XSR O3 C11 DOUB N N 18 XSR C15 C17 DOUB Y N 19 XSR C12 C11 SING N N 20 XSR C12 C40 DOUB Y N 21 XSR C32 C31 DOUB N N 22 XSR C11 N1 SING N N 23 XSR C39 C31 SING N N 24 XSR C39 C18 DOUB N N 25 XSR C17 C40 SING Y N 26 XSR C17 C18 SING N N 27 XSR C40 F3 SING N N 28 XSR N1 C10 SING N N 29 XSR C31 SI1 SING N N 30 XSR C10 C9 SING N N 31 XSR C18 C19 SING N N 32 XSR C1 C2 SING N N 33 XSR C2 C3 SING N N 34 XSR C3 C4 SING N N 35 XSR C9 O2 SING N N 36 XSR O2 C8 SING N N 37 XSR C19 C20 DOUB Y N 38 XSR C19 C27 SING Y N 39 XSR SI1 C29 SING N N 40 XSR SI1 C27 SING N N 41 XSR SI1 C30 SING N N 42 XSR C4 C5 SING N N 43 XSR C20 C21 SING Y N 44 XSR C6 C5 SING N N 45 XSR C6 O1 SING N N 46 XSR C27 C26 DOUB Y N 47 XSR C7 C8 SING N N 48 XSR C7 O1 SING N N 49 XSR C21 C22 DOUB Y N 50 XSR C26 C22 SING Y N 51 XSR C22 N2 SING N N 52 XSR N2 C25 SING N N 53 XSR N2 C23 SING N N 54 XSR C25 C24 SING N N 55 XSR C23 C24 SING N N 56 XSR C4 H8 SING N N 57 XSR C4 H9 SING N N 58 XSR C5 H10 SING N N 59 XSR C5 H11 SING N N 60 XSR C6 H12 SING N N 61 XSR C6 H13 SING N N 62 XSR C7 H15 SING N N 63 XSR C7 H14 SING N N 64 XSR C8 H17 SING N N 65 XSR C8 H16 SING N N 66 XSR C9 H19 SING N N 67 XSR C9 H18 SING N N 68 XSR C10 H21 SING N N 69 XSR C10 H20 SING N N 70 XSR N1 H22 SING N N 71 XSR C3 H6 SING N N 72 XSR C3 H7 SING N N 73 XSR C1 H2 SING N N 74 XSR C1 H3 SING N N 75 XSR C1 H1 SING N N 76 XSR C2 H4 SING N N 77 XSR C2 H5 SING N N 78 XSR O4 H47 SING N N 79 XSR C20 H23 SING N N 80 XSR C21 H24 SING N N 81 XSR C23 H26 SING N N 82 XSR C23 H25 SING N N 83 XSR C24 H28 SING N N 84 XSR C24 H27 SING N N 85 XSR C25 H29 SING N N 86 XSR C25 H30 SING N N 87 XSR C26 H31 SING N N 88 XSR C29 H32 SING N N 89 XSR C29 H33 SING N N 90 XSR C29 H34 SING N N 91 XSR C30 H37 SING N N 92 XSR C30 H35 SING N N 93 XSR C30 H36 SING N N 94 XSR C32 H38 SING N N 95 XSR C34 H39 SING N N 96 XSR C34 H40 SING N N 97 XSR C35 H41 SING N N 98 XSR C35 H42 SING N N 99 XSR C36 H44 SING N N 100 XSR C36 H43 SING N N 101 XSR C37 H45 SING N N 102 XSR C38 H46 SING N N 103 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XSR SMILES ACDLabs 12.01 "O=C(O)c1c(F)c(F)c(C(=O)NCCOCCOCCCCCC)c(F)c1C=1c2ccc(cc2[Si](C)(C)C2=CC(\C=CC=12)=[N+]1/CCC1)N1CCC1" XSR InChI InChI 1.06 "InChI=1S/C39H46F3N3O5Si/c1-4-5-6-7-19-49-21-22-50-20-14-43-38(46)34-35(40)32(33(39(47)48)36(41)37(34)42)31-27-12-10-25(44-15-8-16-44)23-29(27)51(2,3)30-24-26(11-13-28(30)31)45-17-9-18-45/h10-13,23-24H,4-9,14-22H2,1-3H3,(H-,43,46,47,48)/p+1" XSR InChIKey InChI 1.06 ZQPHKFANJCSITK-UHFFFAOYSA-O XSR SMILES_CANONICAL CACTVS 3.385 "CCCCCCOCCOCCNC(=O)c1c(F)c(F)c(C(O)=O)c(c1F)C2=C3C=C[C](C=C3[Si](C)(C)c4cc(ccc24)N5CCC5)=[N+]6C[CH2]C6" XSR SMILES CACTVS 3.385 "CCCCCCOCCOCCNC(=O)c1c(F)c(F)c(C(O)=O)c(c1F)C2=C3C=C[C](C=C3[Si](C)(C)c4cc(ccc24)N5CCC5)=[N+]6C[CH2]C6" XSR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCOCCOCCNC(=O)c1c(c(c(c(c1F)F)C(=O)O)C2=C3C=CC(=[N+]4CCC4)C=C3[Si](c5c2ccc(c5)N6CCC6)(C)C)F" XSR SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCOCCOCCNC(=O)c1c(c(c(c(c1F)F)C(=O)O)C2=C3C=CC(=[N+]4CCC4)C=C3[Si](c5c2ccc(c5)N6CCC6)(C)C)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XSR "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(4aM,10P)-7-(azetidin-1-yl)-10-[2-carboxy-3,4,6-trifluoro-5-({2-[2-(hexyloxy)ethoxy]ethyl}carbamoyl)phenyl]-5,5-dimethyldibenzo[b,e]silin-3(5H)-ylidene]azetidin-1-ium" XSR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-(azetidin-1-ium-1-ylidene)-7-(azetidin-1-yl)-5,5-dimethyl-benzo[b][1]benzosilin-10-yl]-3,5,6-tris(fluoranyl)-4-[2-(2-hexoxyethoxy)ethylcarbamoyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XSR "Create component" 2023-11-09 RCSB XSR "Initial release" 2024-06-05 RCSB #