data_XT7 # _chem_comp.id XT7 _chem_comp.name "5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1S,3R)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-12 _chem_comp.pdbx_modified_date 2021-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.687 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XT7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LBR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XT7 C01 C1 C 0 1 N N N 1.785 11.923 32.015 -1.471 1.367 -2.696 C01 XT7 1 XT7 C02 C2 C 0 1 N N R 1.641 11.773 33.577 -1.475 0.989 -1.214 C02 XT7 2 XT7 N03 N1 N 0 1 N N N 1.971 10.393 33.926 -2.855 0.791 -0.764 N03 XT7 3 XT7 C04 C3 C 0 1 N N N 1.679 9.713 35.098 -3.591 1.847 -0.363 C04 XT7 4 XT7 C05 C4 C 0 1 Y N N 2.048 8.350 35.407 -4.984 1.647 0.091 C05 XT7 5 XT7 C06 C5 C 0 1 Y N N 1.088 7.372 35.296 -5.707 2.715 0.624 C06 XT7 6 XT7 C07 C6 C 0 1 N N N -0.257 7.696 34.828 -5.068 4.075 0.737 C07 XT7 7 XT7 C08 C7 C 0 1 Y N N 1.410 6.072 35.641 -7.007 2.526 1.046 C08 XT7 8 XT7 C09 C8 C 0 1 Y N N 2.637 5.680 36.085 -7.598 1.281 0.945 C09 XT7 9 XT7 C10 C9 C 0 1 Y N N 3.699 6.599 36.246 -6.886 0.210 0.417 C10 XT7 10 XT7 N11 N2 N 0 1 N N N 4.962 6.086 36.740 -7.487 -1.047 0.317 N11 XT7 11 XT7 C12 C10 C 0 1 N N N 6.298 6.592 36.745 -8.868 -1.236 0.768 C12 XT7 12 XT7 C13 C11 C 0 1 N N N 6.848 7.250 35.421 -9.209 -2.694 1.126 C13 XT7 13 XT7 N14 N3 N 0 1 N N N 7.549 6.030 35.225 -9.624 -2.841 -0.286 N14 XT7 14 XT7 C15 C12 C 0 1 N N N 7.501 5.511 36.551 -9.881 -1.383 -0.382 C15 XT7 15 XT7 C16 C13 C 0 1 Y N N 3.345 7.954 35.894 -5.581 0.391 -0.016 C16 XT7 16 XT7 O17 O1 O 0 1 N N N 1.031 10.319 35.938 -3.110 2.963 -0.375 O17 XT7 17 XT7 C18 C14 C 0 1 Y N N 2.483 12.766 34.373 -0.695 -0.286 -1.019 C18 XT7 18 XT7 C19 C15 C 0 1 Y N N 3.875 12.736 34.292 -1.283 -1.505 -1.302 C19 XT7 19 XT7 C20 C16 C 0 1 Y N N 4.649 13.644 35.029 -0.575 -2.680 -1.125 C20 XT7 20 XT7 C21 C17 C 0 1 Y N N 4.072 14.567 35.878 0.725 -2.643 -0.666 C21 XT7 21 XT7 C22 C18 C 0 1 Y N N 2.665 14.641 36.030 1.326 -1.416 -0.378 C22 XT7 22 XT7 C23 C19 C 0 1 Y N N 1.988 15.616 36.902 2.718 -1.368 0.114 C23 XT7 23 XT7 C24 C20 C 0 1 Y N N 2.371 16.496 37.832 3.507 -2.441 0.325 C24 XT7 24 XT7 C25 C21 C 0 1 Y N N 1.339 17.305 38.451 4.772 -2.144 0.788 C25 XT7 25 XT7 C26 C22 C 0 1 Y N N 0.084 17.094 38.019 5.023 -0.843 0.957 C26 XT7 26 XT7 C27 C23 C 0 1 N N N -1.294 17.696 38.371 6.325 -0.268 1.451 C27 XT7 27 XT7 N28 N4 N 0 1 N N N -1.904 18.624 37.333 7.207 0.001 0.307 N28 XT7 28 XT7 C29 C24 C 0 1 N N S -1.145 19.750 36.653 8.489 0.563 0.751 C29 XT7 29 XT7 C30 C25 C 0 1 N N N -0.980 19.485 35.120 9.514 -0.567 1.019 C30 XT7 30 XT7 C31 C26 C 0 1 N N N -1.699 20.650 34.399 10.873 0.160 0.866 C31 XT7 31 XT7 C32 C27 C 0 1 N N R -1.737 21.878 35.321 10.648 1.140 -0.303 C32 XT7 32 XT7 O33 O2 O 0 1 N N N -2.807 22.722 35.109 11.106 0.558 -1.525 O33 XT7 33 XT7 C34 C28 C 0 1 N N N -1.908 21.159 36.708 9.132 1.397 -0.377 C34 XT7 34 XT7 S35 S1 S 0 1 Y N N 0.189 15.797 36.761 3.606 0.098 0.509 S35 XT7 35 XT7 C36 C29 C 0 1 Y N N 1.951 13.705 35.236 0.607 -0.234 -0.564 C36 XT7 36 XT7 H1 H1 H 0 1 N N N 1.542 12.955 31.721 -0.444 1.515 -3.031 H1 XT7 37 XT7 H2 H2 H 0 1 N N N 2.819 11.691 31.718 -1.931 0.568 -3.276 H2 XT7 38 XT7 H3 H3 H 0 1 N N N 1.095 11.227 31.515 -2.035 2.289 -2.837 H3 XT7 39 XT7 H4 H4 H 0 1 N N N 0.585 11.954 33.825 -1.014 1.789 -0.633 H4 XT7 40 XT7 H5 H5 H 0 1 N N N 2.470 9.874 33.232 -3.238 -0.100 -0.754 H5 XT7 41 XT7 H6 H6 H 0 1 N N N -0.299 7.594 33.734 -5.152 4.597 -0.217 H6 XT7 42 XT7 H7 H7 H 0 1 N N N -0.981 7.008 35.288 -5.573 4.651 1.512 H7 XT7 43 XT7 H8 H8 H 0 1 N N N -0.504 8.730 35.110 -4.015 3.962 0.997 H8 XT7 44 XT7 H9 H9 H 0 1 N N N 0.640 5.320 35.553 -7.565 3.355 1.458 H9 XT7 45 XT7 H10 H10 H 0 1 N N N 2.803 4.639 36.320 -8.615 1.140 1.277 H10 XT7 46 XT7 H11 H11 H 0 1 N N N 4.777 5.923 37.709 -6.991 -1.794 -0.052 H11 XT7 47 XT7 H12 H12 H 0 1 N N N 6.508 7.235 37.613 -9.169 -0.516 1.528 H12 XT7 48 XT7 H13 H13 H 0 1 N N N 7.486 8.133 35.571 -8.339 -3.295 1.393 H13 XT7 49 XT7 H14 H14 H 0 1 N N N 6.084 7.474 34.662 -10.028 -2.791 1.839 H14 XT7 50 XT7 H15 H15 H 0 1 N N N 7.081 5.432 34.574 -8.843 -3.109 -0.867 H15 XT7 51 XT7 H17 H17 H 0 1 N N N 7.205 4.455 36.634 -10.898 -1.098 -0.112 H17 XT7 52 XT7 H18 H18 H 0 1 N N N 8.399 5.689 37.161 -9.549 -0.939 -1.321 H18 XT7 53 XT7 H19 H19 H 0 1 N N N 4.100 8.719 36.003 -5.028 -0.439 -0.431 H19 XT7 54 XT7 H20 H20 H 0 1 N N N 4.360 12.009 33.658 -2.301 -1.540 -1.662 H20 XT7 55 XT7 H21 H21 H 0 1 N N N 5.724 13.621 34.930 -1.040 -3.629 -1.348 H21 XT7 56 XT7 H22 H22 H 0 1 N N N 4.703 15.244 36.435 1.277 -3.560 -0.528 H22 XT7 57 XT7 H23 H23 H 0 1 N N N 3.409 16.601 38.112 3.174 -3.452 0.145 H23 XT7 58 XT7 H24 H24 H 0 1 N N N 1.566 18.034 39.215 5.506 -2.908 0.999 H24 XT7 59 XT7 H25 H25 H 0 1 N N N -1.183 18.265 39.306 6.132 0.662 1.986 H25 XT7 60 XT7 H26 H26 H 0 1 N N N -1.994 16.863 38.529 6.806 -0.980 2.121 H26 XT7 61 XT7 H27 H27 H 0 1 N N N -2.686 19.056 37.782 6.758 0.608 -0.362 H27 XT7 62 XT7 H29 H29 H 0 1 N N N -0.152 19.865 37.112 8.349 1.173 1.643 H29 XT7 63 XT7 H30 H30 H 0 1 N N N -1.442 18.525 34.847 9.398 -0.962 2.029 H30 XT7 64 XT7 H31 H31 H 0 1 N N N 0.086 19.469 34.849 9.413 -1.363 0.281 H31 XT7 65 XT7 H32 H32 H 0 1 N N N -1.156 20.901 33.476 11.119 0.704 1.778 H32 XT7 66 XT7 H33 H33 H 0 1 N N N -2.727 20.348 34.149 11.661 -0.552 0.621 H33 XT7 67 XT7 H34 H34 H 0 1 N N N -0.771 22.404 35.292 11.176 2.075 -0.114 H34 XT7 68 XT7 H35 H35 H 0 1 N N N -2.759 23.453 35.714 12.051 0.352 -1.533 H35 XT7 69 XT7 H36 H36 H 0 1 N N N -1.476 21.783 37.504 8.746 1.077 -1.344 H36 XT7 70 XT7 H37 H37 H 0 1 N N N -2.977 20.994 36.910 8.925 2.456 -0.223 H37 XT7 71 XT7 H38 H38 H 0 1 N N N 0.874 13.730 35.315 1.067 0.719 -0.347 H38 XT7 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XT7 C01 C02 SING N N 1 XT7 C02 N03 SING N N 2 XT7 C02 C18 SING N N 3 XT7 N03 C04 SING N N 4 XT7 C19 C18 DOUB Y N 5 XT7 C19 C20 SING Y N 6 XT7 C18 C36 SING Y N 7 XT7 C31 C30 SING N N 8 XT7 C31 C32 SING N N 9 XT7 C07 C06 SING N N 10 XT7 C20 C21 DOUB Y N 11 XT7 C04 C05 SING N N 12 XT7 C04 O17 DOUB N N 13 XT7 O33 C32 SING N N 14 XT7 C30 C29 SING N N 15 XT7 N14 C13 SING N N 16 XT7 N14 C15 SING N N 17 XT7 C36 C22 DOUB Y N 18 XT7 C06 C05 DOUB Y N 19 XT7 C06 C08 SING Y N 20 XT7 C32 C34 SING N N 21 XT7 C05 C16 SING Y N 22 XT7 C13 C12 SING N N 23 XT7 C08 C09 DOUB Y N 24 XT7 C21 C22 SING Y N 25 XT7 C16 C10 DOUB Y N 26 XT7 C22 C23 SING N N 27 XT7 C09 C10 SING Y N 28 XT7 C10 N11 SING N N 29 XT7 C15 C12 SING N N 30 XT7 C29 C34 SING N N 31 XT7 C29 N28 SING N N 32 XT7 N11 C12 SING N N 33 XT7 S35 C23 SING Y N 34 XT7 S35 C26 SING Y N 35 XT7 C23 C24 DOUB Y N 36 XT7 N28 C27 SING N N 37 XT7 C24 C25 SING Y N 38 XT7 C26 C27 SING N N 39 XT7 C26 C25 DOUB Y N 40 XT7 C01 H1 SING N N 41 XT7 C01 H2 SING N N 42 XT7 C01 H3 SING N N 43 XT7 C02 H4 SING N N 44 XT7 N03 H5 SING N N 45 XT7 C07 H6 SING N N 46 XT7 C07 H7 SING N N 47 XT7 C07 H8 SING N N 48 XT7 C08 H9 SING N N 49 XT7 C09 H10 SING N N 50 XT7 N11 H11 SING N N 51 XT7 C12 H12 SING N N 52 XT7 C13 H13 SING N N 53 XT7 C13 H14 SING N N 54 XT7 N14 H15 SING N N 55 XT7 C15 H17 SING N N 56 XT7 C15 H18 SING N N 57 XT7 C16 H19 SING N N 58 XT7 C19 H20 SING N N 59 XT7 C20 H21 SING N N 60 XT7 C21 H22 SING N N 61 XT7 C24 H23 SING N N 62 XT7 C25 H24 SING N N 63 XT7 C27 H25 SING N N 64 XT7 C27 H26 SING N N 65 XT7 N28 H27 SING N N 66 XT7 C29 H29 SING N N 67 XT7 C30 H30 SING N N 68 XT7 C30 H31 SING N N 69 XT7 C31 H32 SING N N 70 XT7 C31 H33 SING N N 71 XT7 C32 H34 SING N N 72 XT7 O33 H35 SING N N 73 XT7 C34 H36 SING N N 74 XT7 C34 H37 SING N N 75 XT7 C36 H38 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XT7 SMILES ACDLabs 12.01 "CC(NC(c1cc(ccc1C)NC2CNC2)=O)c3cc(ccc3)c5ccc(CNC4CC(CC4)O)s5" XT7 InChI InChI 1.03 "InChI=1S/C29H36N4O2S/c1-18-6-7-23(33-24-15-30-16-24)14-27(18)29(35)32-19(2)20-4-3-5-21(12-20)28-11-10-26(36-28)17-31-22-8-9-25(34)13-22/h3-7,10-12,14,19,22,24-25,30-31,33-34H,8-9,13,15-17H2,1-2H3,(H,32,35)/t19-,22+,25-/m1/s1" XT7 InChIKey InChI 1.03 IGVYCVBUHQMNRZ-RZTXVSJASA-N XT7 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[C@H]5CC[C@@H](O)C5)cc4" XT7 SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[CH]5CC[CH](O)C5)cc4" XT7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc(c2)c3ccc(s3)CN[C@H]4CC[C@H](C4)O)NC5CNC5" XT7 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cccc(c2)c3ccc(s3)CNC4CCC(C4)O)NC5CNC5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XT7 "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1S,3R)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide" XT7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(1~{S},3~{R})-3-oxidanylcyclopentyl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XT7 "Create component" 2021-01-12 RCSB XT7 "Initial release" 2021-02-24 RCSB ##