data_XTB # _chem_comp.id XTB _chem_comp.name "N-[(3-chloro-4-cyanophenyl)methyl]-N-methyl-2-[6-{1-[(2R)-oxetane-2-carbonyl]piperidin-4-yl}-4-oxoquinazolin-3(4H)-yl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 Cl N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-08 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.006 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XTB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G7K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XTB C10 C1 C 0 1 N N N N N N -15.023 12.985 46.213 -0.625 1.681 0.699 C10 XTB 1 XTB C13 C2 C 0 1 N N N N N N -14.441 10.489 47.958 -3.676 2.217 -0.193 C13 XTB 2 XTB C16 C3 C 0 1 N N N N N N -13.162 8.392 47.992 -5.872 1.584 -1.037 C16 XTB 3 XTB C17 C4 C 0 1 N N N N N N -16.350 14.571 41.652 3.877 -0.439 0.217 C17 XTB 4 XTB C18 C5 C 0 1 N N N N N N -14.865 14.552 41.167 4.358 -0.993 -1.126 C18 XTB 5 XTB C19 C6 C 0 1 N N N N N N -14.820 14.613 39.625 5.293 -2.181 -0.878 C19 XTB 6 XTB C21 C7 C 0 1 N N N N N N -17.165 13.733 39.422 6.021 -1.124 1.300 C21 XTB 7 XTB C22 C8 C 0 1 N N N N N N -17.222 13.509 40.917 5.078 0.052 1.028 C22 XTB 8 XTB C23 C9 C 0 1 N N N N N N -15.323 12.620 38.082 7.664 -1.935 -0.323 C23 XTB 9 XTB C25 C10 C 0 1 N N S N N N -13.826 12.604 37.697 8.762 -1.491 0.610 C25 XTB 10 XTB C26 C11 C 0 1 N N N N N N -12.451 10.313 49.467 -5.589 2.629 1.257 C26 XTB 11 XTB C27 C12 C 0 1 Y N N N N N -12.636 8.344 46.604 -6.014 0.099 -0.824 C27 XTB 12 XTB C28 C13 C 0 1 Y N N N N N -11.755 9.347 46.129 -7.039 -0.387 -0.033 C28 XTB 13 XTB C1 C14 C 0 1 Y N N N N N -16.546 14.396 43.157 2.930 0.709 -0.024 C1 XTB 14 XTB C2 C15 C 0 1 Y N N N N N -17.823 14.736 43.648 3.370 1.830 -0.715 C2 XTB 15 XTB C3 C16 C 0 1 Y N N N N N -18.152 14.421 44.945 2.524 2.891 -0.948 C3 XTB 16 XTB C4 C17 C 0 1 Y N N N N N -15.632 13.858 43.999 1.637 0.637 0.446 C4 XTB 17 XTB C5 C18 C 0 1 Y N N N N N -15.949 13.560 45.319 0.766 1.701 0.222 C5 XTB 18 XTB C6 C19 C 0 1 Y N N N N N -17.267 13.825 45.804 1.209 2.842 -0.483 C6 XTB 19 XTB N7 N1 N 0 1 N N N N N N -17.686 13.517 47.105 0.342 3.865 -0.689 N7 XTB 20 XTB C8 C20 C 0 1 N N N N N N -16.845 12.934 47.930 -0.881 3.820 -0.256 C8 XTB 21 XTB N9 N2 N 0 1 N N N N N N -15.508 12.656 47.512 -1.393 2.762 0.425 N9 XTB 22 XTB O11 O1 O 0 1 N N N N N N -13.861 12.741 45.899 -1.070 0.729 1.312 O11 XTB 23 XTB C12 C21 C 0 1 N N N N N N -14.646 11.962 48.479 -2.786 2.795 0.877 C12 XTB 24 XTB N14 N3 N 0 1 N N N N N N -13.382 9.798 48.451 -5.007 2.145 0.003 N14 XTB 25 XTB O15 O2 O 0 1 N N N N N N -15.213 9.972 47.123 -3.193 1.817 -1.231 O15 XTB 26 XTB N20 N4 N 0 1 N N N N N N -15.732 13.578 39.031 6.374 -1.753 0.020 N20 XTB 27 XTB O24 O3 O 0 1 N N N N N N -16.143 11.831 37.527 7.943 -2.456 -1.382 O24 XTB 28 XTB C29 C22 C 0 1 Y N N N N N -11.542 7.946 44.093 -6.275 -2.632 -0.433 C29 XTB 29 XTB C30 C23 C 0 1 Y N N N N N -12.463 6.984 44.594 -5.247 -2.133 -1.236 C30 XTB 30 XTB C31 C24 C 0 1 Y N N N N N -11.194 9.105 44.864 -7.176 -1.747 0.167 C31 XTB 31 XTB C32 C25 C 0 1 Y N N N N N -12.967 7.210 45.821 -5.123 -0.772 -1.426 C32 XTB 32 XTB CL33 CL1 CL 0 0 N N N N N N -9.958 10.151 44.258 -8.462 -2.356 1.161 CL33 XTB 33 XTB C34 C26 C 0 1 N N N N N N -10.959 7.739 42.819 -6.411 -4.043 -0.232 C34 XTB 34 XTB N35 N5 N 0 1 N N N N N N -10.504 7.560 41.750 -6.518 -5.163 -0.072 N35 XTB 35 XTB O36 O4 O 0 1 N N N N N N -13.518 11.373 37.031 10.052 -1.442 -0.012 O36 XTB 36 XTB C37 C27 C 0 1 N N N N N N -13.132 12.020 35.812 10.337 -0.273 0.767 C37 XTB 37 XTB C38 C28 C 0 1 N N N N N N -13.605 13.367 36.362 8.834 0.031 0.783 C38 XTB 38 XTB H45 H1 H 0 1 N N N N N N -12.439 7.906 48.664 -5.430 1.769 -2.016 H45 XTB 39 XTB H46 H2 H 0 1 N N N N N N -14.119 7.851 48.030 -6.854 2.054 -0.987 H46 XTB 40 XTB H47 H3 H 0 1 N N N N N N -16.758 15.557 41.385 3.362 -1.224 0.770 H47 XTB 41 XTB H48 H4 H 0 1 N N N N N N -14.333 15.421 41.583 3.500 -1.321 -1.713 H48 XTB 42 XTB H49 H5 H 0 1 N N N N N N -14.380 13.626 41.511 4.895 -0.215 -1.669 H49 XTB 43 XTB H50 H6 H 0 1 N N N N N N -15.140 15.611 39.293 4.734 -2.995 -0.417 H50 XTB 44 XTB H51 H7 H 0 1 N N N N N N -13.791 14.426 39.285 5.716 -2.517 -1.825 H51 XTB 45 XTB H52 H8 H 0 1 N N N N N N -17.521 14.744 39.174 6.924 -0.762 1.791 H52 XTB 46 XTB H53 H9 H 0 1 N N N N N N -17.785 12.988 38.901 5.522 -1.851 1.942 H53 XTB 47 XTB H55 H10 H 0 1 N N N N N N -16.842 12.503 41.149 5.608 0.820 0.465 H55 XTB 48 XTB H54 H11 H 0 1 N N N N N N -18.264 13.595 41.258 4.732 0.468 1.974 H54 XTB 49 XTB H56 H12 H 0 1 N N N N N N -13.146 12.906 38.507 8.757 -2.035 1.554 H56 XTB 50 XTB H58 H13 H 0 1 N N N N N N -11.688 9.551 49.685 -5.845 3.684 1.156 H58 XTB 51 XTB H57 H14 H 0 1 N N N N N N -11.963 11.223 49.089 -6.489 2.058 1.485 H57 XTB 52 XTB H59 H15 H 0 1 N N N N N N -13.006 10.550 50.387 -4.867 2.507 2.065 H59 XTB 53 XTB H60 H16 H 0 1 N N N N N N -11.530 10.236 46.700 -7.734 0.298 0.430 H60 XTB 54 XTB H39 H17 H 0 1 N N N N N N -18.536 15.239 43.011 4.387 1.869 -1.077 H39 XTB 55 XTB H40 H18 H 0 1 N N N N N N -19.145 14.652 45.300 2.877 3.757 -1.488 H40 XTB 56 XTB H41 H19 H 0 1 N N N N N N -14.635 13.656 43.637 1.301 -0.237 0.983 H41 XTB 57 XTB H42 H20 H 0 1 N N N N N N -17.166 12.665 48.926 -1.525 4.665 -0.450 H42 XTB 58 XTB H44 H21 H 0 1 N N N N N N -13.675 12.473 48.551 -3.079 3.826 1.075 H44 XTB 59 XTB H43 H22 H 0 1 N N N N N N -15.127 11.947 49.468 -2.886 2.207 1.790 H43 XTB 60 XTB H61 H23 H 0 1 N N N N N N -12.744 6.115 44.018 -4.548 -2.810 -1.703 H61 XTB 61 XTB H62 H24 H 0 1 N N N N N N -13.660 6.490 46.230 -4.327 -0.386 -2.045 H62 XTB 62 XTB H64 H25 H 0 1 N N N N N N -12.053 11.976 35.605 10.744 -0.499 1.753 H64 XTB 63 XTB H63 H26 H 0 1 N N N N N N -13.690 11.677 34.928 10.924 0.472 0.230 H63 XTB 64 XTB H66 H27 H 0 1 N N N N N N -14.518 13.767 35.896 8.478 0.603 -0.074 H66 XTB 65 XTB H65 H28 H 0 1 N N N N N N -12.836 14.153 36.396 8.456 0.397 1.738 H65 XTB 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XTB C1 C2 DOUB Y N 1 XTB C1 C4 SING Y N 2 XTB C1 C17 SING N N 3 XTB C2 C3 SING Y N 4 XTB C3 C6 DOUB Y N 5 XTB C4 C5 DOUB Y N 6 XTB C5 C6 SING Y N 7 XTB C5 C10 SING N N 8 XTB C6 N7 SING N N 9 XTB N7 C8 DOUB N N 10 XTB C8 N9 SING N N 11 XTB N9 C10 SING N N 12 XTB N9 C12 SING N N 13 XTB C10 O11 DOUB N N 14 XTB C12 C13 SING N N 15 XTB C13 N14 SING N N 16 XTB C13 O15 DOUB N N 17 XTB N14 C16 SING N N 18 XTB N14 C26 SING N N 19 XTB C16 C27 SING N N 20 XTB C17 C18 SING N N 21 XTB C17 C22 SING N N 22 XTB C18 C19 SING N N 23 XTB C19 N20 SING N N 24 XTB N20 C21 SING N N 25 XTB N20 C23 SING N N 26 XTB C21 C22 SING N N 27 XTB C23 O24 DOUB N N 28 XTB C23 C25 SING N N 29 XTB C25 O36 SING N N 30 XTB C25 C38 SING N N 31 XTB C27 C28 DOUB Y N 32 XTB C27 C32 SING Y N 33 XTB C28 C31 SING Y N 34 XTB C29 C30 SING Y N 35 XTB C29 C31 DOUB Y N 36 XTB C29 C34 SING N N 37 XTB C30 C32 DOUB Y N 38 XTB C31 CL33 SING N N 39 XTB C34 N35 TRIP N N 40 XTB O36 C37 SING N N 41 XTB C37 C38 SING N N 42 XTB C16 H45 SING N N 43 XTB C16 H46 SING N N 44 XTB C17 H47 SING N N 45 XTB C18 H48 SING N N 46 XTB C18 H49 SING N N 47 XTB C19 H50 SING N N 48 XTB C19 H51 SING N N 49 XTB C21 H52 SING N N 50 XTB C21 H53 SING N N 51 XTB C22 H55 SING N N 52 XTB C22 H54 SING N N 53 XTB C25 H56 SING N N 54 XTB C26 H58 SING N N 55 XTB C26 H57 SING N N 56 XTB C26 H59 SING N N 57 XTB C28 H60 SING N N 58 XTB C2 H39 SING N N 59 XTB C3 H40 SING N N 60 XTB C4 H41 SING N N 61 XTB C8 H42 SING N N 62 XTB C12 H44 SING N N 63 XTB C12 H43 SING N N 64 XTB C30 H61 SING N N 65 XTB C32 H62 SING N N 66 XTB C37 H64 SING N N 67 XTB C37 H63 SING N N 68 XTB C38 H66 SING N N 69 XTB C38 H65 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XTB SMILES ACDLabs 12.01 "O=C(N1CCC(CC1)c1ccc2N=CN(CC(=O)N(C)Cc3ccc(C#N)c(Cl)c3)C(=O)c2c1)C1CCO1" XTB InChI InChI 1.06 "InChI=1S/C28H28ClN5O4/c1-32(15-18-2-3-21(14-30)23(29)12-18)26(35)16-34-17-31-24-5-4-20(13-22(24)27(34)36)19-6-9-33(10-7-19)28(37)25-8-11-38-25/h2-5,12-13,17,19,25H,6-11,15-16H2,1H3" XTB InChIKey InChI 1.06 XIFPUYLQCKLVLP-UHFFFAOYSA-N XTB SMILES_CANONICAL CACTVS 3.385 "CN(Cc1ccc(C#N)c(Cl)c1)C(=O)CN2C=Nc3ccc(cc3C2=O)C4CCN(CC4)C(=O)[C@@H]5CCO5" XTB SMILES CACTVS 3.385 "CN(Cc1ccc(C#N)c(Cl)c1)C(=O)CN2C=Nc3ccc(cc3C2=O)C4CCN(CC4)C(=O)[CH]5CCO5" XTB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(Cc1ccc(c(c1)Cl)C#N)C(=O)CN2C=Nc3ccc(cc3C2=O)C4CCN(CC4)C(=O)[C@@H]5CCO5" XTB SMILES "OpenEye OEToolkits" 2.0.7 "CN(Cc1ccc(c(c1)Cl)C#N)C(=O)CN2C=Nc3ccc(cc3C2=O)C4CCN(CC4)C(=O)C5CCO5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XTB "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3-chloro-4-cyanophenyl)methyl]-N-methyl-2-[6-{1-[(2R)-oxetane-2-carbonyl]piperidin-4-yl}-4-oxoquinazolin-3(4H)-yl]acetamide" XTB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(3-chloranyl-4-cyano-phenyl)methyl]-~{N}-methyl-2-[6-[1-[(2~{S})-oxetan-2-yl]carbonylpiperidin-4-yl]-4-oxidanylidene-quinazolin-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XTB "Create component" 2023-06-08 RCSB XTB "Initial release" 2024-12-18 RCSB #