data_XTE # _chem_comp.id XTE _chem_comp.name E-CFCP-triphosphate _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 F N6 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[(1~{S},2~{E},3~{S},5~{S})-3-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-1-cyano-2-(fluoranylmethylidene)-5-oxidanyl-cyclopentyl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-10 _chem_comp.pdbx_modified_date 2024-07-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XTE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X1Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XTE C4 C1 C 0 1 Y N N N N N 181.162 272.732 -124.371 4.954 0.602 -0.389 C4 XTE 1 XTE C5 C2 C 0 1 Y N N N N N 182.417 272.681 -125.061 5.165 1.345 0.778 C5 XTE 2 XTE C6 C3 C 0 1 N N N N N N 182.946 271.390 -125.404 6.090 2.415 0.741 C6 XTE 3 XTE C2 C4 C 0 1 N N N N N N 181.105 270.447 -124.450 6.479 1.913 -1.526 C2 XTE 4 XTE "C1'" C5 C 0 1 N N S N N N 179.775 274.549 -123.486 3.490 -1.375 -0.970 "C1'" XTE 5 XTE "C2'" C6 C 0 1 N N N N N N 180.083 274.431 -122.007 3.800 -2.791 -0.426 "C2'" XTE 6 XTE "C3'" C7 C 0 1 N N S N N N 180.488 275.782 -121.469 2.684 -2.992 0.630 "C3'" XTE 7 XTE "C4'" C8 C 0 1 N N S N N N 180.006 276.801 -122.447 1.452 -2.314 -0.004 "C4'" XTE 8 XTE C44 C9 C 0 1 N N N N N N 179.461 276.499 -124.780 1.248 -0.522 -1.771 C44 XTE 9 XTE "C5'" C10 C 0 1 N N N N N N 180.953 277.945 -122.652 0.633 -1.602 1.074 "C5'" XTE 10 XTE "C6'" C11 C 0 1 N N N N N N 179.760 275.987 -123.643 1.973 -1.308 -1.009 "C6'" XTE 11 XTE "C7'" C12 C 0 1 N N N N N N 178.710 277.348 -122.135 0.619 -3.319 -0.685 "C7'" XTE 12 XTE C8 C13 C 0 1 Y N N N N N 181.903 274.719 -124.684 3.699 -0.181 1.245 C8 XTE 13 XTE F46 F1 F 0 1 N N N N N N 179.444 277.781 -124.826 -0.100 -0.568 -1.700 F46 XTE 14 XTE N1 N1 N 0 1 N N N N N N 182.253 270.348 -125.070 6.728 2.672 -0.422 N1 XTE 15 XTE N2 N2 N 0 1 N N N N N N 180.505 269.312 -124.178 7.146 2.194 -2.692 N2 XTE 16 XTE N3 N3 N 0 1 N N N N N N 180.540 271.588 -124.092 5.627 0.913 -1.504 N3 XTE 17 XTE N47 N4 N 0 1 N N N N N N 177.648 277.747 -121.926 -0.023 -4.095 -1.211 N47 XTE 18 XTE N7 N5 N 0 1 Y N N N N N 182.816 273.918 -125.224 4.370 0.818 1.740 N7 XTE 19 XTE N9 N6 N 0 1 Y N N N N N 180.920 274.005 -124.185 4.027 -0.352 -0.069 N9 XTE 20 XTE O1A O1 O 0 1 N N N N N N 184.455 278.285 -123.602 -2.122 -0.965 2.404 O1A XTE 21 XTE O1B O2 O 0 1 N N N N N N 181.579 278.898 -119.960 -4.884 0.195 1.725 O1B XTE 22 XTE O1G O3 O 0 1 N N N N N N 185.119 280.668 -117.765 -7.438 -0.575 -0.459 O1G XTE 23 XTE O2A O4 O 0 1 N N N N N N 182.791 279.835 -122.728 -0.872 1.179 1.945 O2A XTE 24 XTE O2B O5 O 0 1 N N N N N N 182.597 276.760 -119.443 -4.178 2.482 0.924 O2B XTE 25 XTE O2G O6 O 0 1 N N N N N N 184.012 280.766 -119.974 -7.313 1.945 -0.407 O2G XTE 26 XTE "O3'" O7 O 0 1 N N N N N N 179.891 276.001 -120.218 2.438 -4.384 0.842 "O3'" XTE 27 XTE O3A O8 O 0 1 N N N N N N 183.829 278.251 -121.117 -2.777 0.335 0.342 O3A XTE 28 XTE O3B O9 O 0 1 N N N N N N 183.734 278.829 -118.681 -5.149 0.689 -0.736 O3B XTE 29 XTE O3G O10 O 0 1 N N N N N N 186.024 279.411 -119.586 -6.960 0.818 -2.637 O3G XTE 30 XTE "O5'" O11 O 0 1 N N N N N N 182.233 277.436 -122.864 -0.497 -0.967 0.473 "O5'" XTE 31 XTE O6 O12 O 0 1 N N N N N N 184.013 271.275 -125.977 6.305 3.089 1.734 O6 XTE 32 XTE PA P1 P 0 1 N N N N N N 183.355 278.478 -122.632 -1.579 -0.123 1.315 PA XTE 33 XTE PB P2 P 0 1 N N N N N N 182.865 278.162 -119.820 -4.261 0.910 0.589 PB XTE 34 XTE PG P3 P 0 1 N N N N N N 184.774 279.961 -119.017 -6.728 0.745 -1.046 PG XTE 35 XTE H1 H1 H 0 1 N N N N N N 178.824 274.067 -123.757 3.902 -1.253 -1.972 H1 XTE 36 XTE H2 H2 H 0 1 N N N N N N 179.189 274.077 -121.473 3.722 -3.536 -1.219 H2 XTE 37 XTE H3 H3 H 0 1 N N N N N N 180.906 273.716 -121.860 4.785 -2.821 0.040 H3 XTE 38 XTE H4 H4 H 0 1 N N N N N N 181.584 275.831 -121.395 2.952 -2.505 1.567 H4 XTE 39 XTE H5 H5 H 0 1 N N N N N N 179.238 275.890 -125.644 1.730 0.161 -2.455 H5 XTE 40 XTE H6 H6 H 0 1 N N N N N N 180.954 278.588 -121.760 0.292 -2.329 1.811 H6 XTE 41 XTE H7 H7 H 0 1 N N N N N N 180.639 278.532 -123.527 1.253 -0.851 1.565 H7 XTE 42 XTE H8 H8 H 0 1 N N N N N N 181.961 275.797 -124.659 2.990 -0.784 1.791 H8 XTE 43 XTE H9 H9 H 0 1 N N N N N N 179.625 269.313 -123.702 6.985 1.658 -3.484 H9 XTE 44 XTE H10 H10 H 0 1 N N N N N N 180.927 268.446 -124.446 7.778 2.929 -2.724 H10 XTE 45 XTE H12 H12 H 0 1 N N N N N N 184.776 281.553 -117.796 -7.103 -1.401 -0.834 H12 XTE 46 XTE H13 H13 H 0 1 N N N N N N 183.251 280.323 -123.401 -0.492 1.778 1.286 H13 XTE 47 XTE H14 H14 H 0 1 N N N N N N 181.660 276.625 -119.370 -3.780 3.013 0.221 H14 XTE 48 XTE H15 H15 H 0 1 N N N N N N 180.202 275.350 -119.600 3.201 -4.871 1.179 H15 XTE 49 XTE H16 H16 H 0 1 N N N N N N 186.108 279.686 -120.491 -7.891 0.854 -2.898 H16 XTE 50 XTE H17 H17 H 0 1 N N N N N N 182.606 269.439 -125.293 7.366 3.401 -0.471 H17 XTE 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XTE O6 C6 DOUB N N 1 XTE C6 N1 SING N N 2 XTE C6 C5 SING N N 3 XTE N7 C5 SING Y N 4 XTE N7 C8 DOUB Y N 5 XTE N1 C2 SING N N 6 XTE C5 C4 DOUB Y N 7 XTE F46 C44 SING N N 8 XTE C44 "C6'" DOUB N E 9 XTE C8 N9 SING Y N 10 XTE C2 N2 SING N N 11 XTE C2 N3 DOUB N N 12 XTE C4 N9 SING Y N 13 XTE C4 N3 SING N N 14 XTE N9 "C1'" SING N N 15 XTE "C6'" "C1'" SING N N 16 XTE "C6'" "C4'" SING N N 17 XTE O1A PA DOUB N N 18 XTE "C1'" "C2'" SING N N 19 XTE "O5'" "C5'" SING N N 20 XTE "O5'" PA SING N N 21 XTE O2A PA SING N N 22 XTE "C5'" "C4'" SING N N 23 XTE PA O3A SING N N 24 XTE "C4'" "C7'" SING N N 25 XTE "C4'" "C3'" SING N N 26 XTE "C7'" N47 TRIP N N 27 XTE "C2'" "C3'" SING N N 28 XTE "C3'" "O3'" SING N N 29 XTE O3A PB SING N N 30 XTE O2G PG DOUB N N 31 XTE O1B PB DOUB N N 32 XTE PB O2B SING N N 33 XTE PB O3B SING N N 34 XTE O3G PG SING N N 35 XTE PG O3B SING N N 36 XTE PG O1G SING N N 37 XTE "C1'" H1 SING N N 38 XTE "C2'" H2 SING N N 39 XTE "C2'" H3 SING N N 40 XTE "C3'" H4 SING N N 41 XTE C44 H5 SING N N 42 XTE "C5'" H6 SING N N 43 XTE "C5'" H7 SING N N 44 XTE C8 H8 SING N N 45 XTE N2 H9 SING N N 46 XTE N2 H10 SING N N 47 XTE O1G H12 SING N N 48 XTE O2A H13 SING N N 49 XTE O2B H14 SING N N 50 XTE "O3'" H15 SING N N 51 XTE O3G H16 SING N N 52 XTE N1 H17 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XTE InChI InChI 1.06 "InChI=1S/C13H16FN6O12P3/c14-2-6-7(20-5-17-9-10(20)18-12(16)19-11(9)22)1-8(21)13(6,3-15)4-30-34(26,27)32-35(28,29)31-33(23,24)25/h2,5,7-8,21H,1,4H2,(H,26,27)(H,28,29)(H2,23,24,25)(H3,16,18,19,22)/b6-2-/t7-,8-,13-/m0/s1" XTE InChIKey InChI 1.06 SFMARLKONYYOBM-AJJLHOQASA-N XTE SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@H]/3C[C@H](O)[C@](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)(C#N)C/3=C/F" XTE SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[C](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)(C#N)C3=CF" XTE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]\3C[C@@H]([C@](/C3=C\F)(COP(=O)(O)OP(=O)(O)OP(=O)(O)O)C#N)O)N=C(NC2=O)N" XTE SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(C(C3=CF)(COP(=O)(O)OP(=O)(O)OP(=O)(O)O)C#N)O)N=C(NC2=O)N" # _pdbx_chem_comp_identifier.comp_id XTE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(1~{S},2~{E},3~{S},5~{S})-3-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-1-cyano-2-(fluoranylmethylidene)-5-oxidanyl-cyclopentyl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XTE _pdbx_chem_comp_synonyms.name "[[(1~{S},2~{E},3~{S},5~{S})-3-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-1-cyano-2-(fluoranylmethylidene)-5-oxidanyl-cyclopentyl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XTE "Create component" 2023-11-10 PDBJ XTE "Modify name" 2023-11-14 PDBJ XTE "Initial release" 2024-07-17 RCSB #