data_XTY # _chem_comp.id XTY _chem_comp.name "(1R)-1,4-ANHYDRO-2-DEOXY-1-(6-METHYL-2,4-DIOXO-1,2,3,4-TETRAHYDROQUINAZOLIN-8-YL)-5-O-PHOSPHONO-D-ERYTHRO-PENTITOL" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C14 H17 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-09-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.267 _chem_comp.one_letter_code N _chem_comp.three_letter_code XTY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ICZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XTY P P P 0 1 N N N -9.839 -9.271 0.414 0.240 4.324 -3.132 P XTY 1 XTY OP1 O1P O 0 1 N N N -9.875 -10.334 1.443 -0.617 4.492 -1.771 OP1 XTY 2 XTY OP2 O2P O 0 1 N N N -11.016 -8.395 0.218 1.041 5.526 -3.538 OP2 XTY 3 XTY "C5'" "C5'" C 0 1 N N N -7.368 -8.461 -0.080 0.425 1.800 -2.490 "C5'" XTY 4 XTY "C4'" "C4'" C 0 1 N N R -6.275 -7.505 0.390 1.445 0.683 -2.312 "C4'" XTY 5 XTY "O4'" "O4'" O 0 1 N N N -5.554 -7.034 -0.755 2.346 1.070 -1.255 "O4'" XTY 6 XTY "C3'" "C3'" C 0 1 N N S -6.781 -6.254 1.101 0.810 -0.632 -1.883 "C3'" XTY 7 XTY "C2'" "C2'" C 0 1 N N N -6.749 -5.175 0.030 0.863 -0.564 -0.374 "C2'" XTY 8 XTY "C1'" "C1'" C 0 1 N N R -5.567 -5.603 -0.845 2.161 0.197 -0.125 "C1'" XTY 9 XTY "O5'" "O5'" O 0 1 N N N -8.560 -8.335 0.704 1.106 2.980 -2.877 "O5'" XTY 10 XTY C2 C2 C 0 1 N N N -3.717 -7.802 -3.859 3.671 -1.549 3.467 C2 XTY 11 XTY O2 O2 O 0 1 N N N -2.973 -8.736 -3.575 4.116 -2.698 3.437 O2 XTY 12 XTY N3 N3 N 0 1 N N N -3.963 -7.463 -5.175 3.639 -0.793 4.639 N3 XTY 13 XTY C4 C4 C 0 1 N N N -4.784 -6.430 -5.580 3.160 0.505 4.783 C4 XTY 14 XTY O4 O4 O 0 1 N N N -4.944 -6.191 -6.775 3.160 1.115 5.847 O4 XTY 15 XTY C5 C5 C 0 1 Y N N -5.414 -5.672 -4.587 2.634 1.120 3.549 C5 XTY 16 XTY C6 C6 C 0 1 Y N N -5.181 -5.997 -3.226 2.653 0.386 2.361 C6 XTY 17 XTY N N N 0 1 N N N -4.341 -7.051 -2.865 3.165 -0.920 2.343 N XTY 18 XTY CP CP C 0 1 Y N N -6.265 -4.598 -4.939 2.124 2.421 3.563 CP XTY 19 XTY CD CD C 0 1 Y N N -6.655 -4.180 -2.576 1.651 2.249 1.196 CD XTY 20 XTY C8 C8 C 0 1 Y N N -5.804 -5.251 -2.197 2.161 0.950 1.182 C8 XTY 21 XTY C7 C7 C 0 1 Y N N -6.879 -3.859 -3.929 1.633 2.982 2.383 C7 XTY 22 XTY C7A C7A C 0 1 N N N -7.799 -2.697 -4.294 1.086 4.370 2.391 C7A XTY 23 XTY "O3'" "O3'" O 0 1 N N N -5.805 -5.906 2.088 1.597 -1.728 -2.344 "O3'" XTY 24 XTY OP3 O3P O 0 1 N Y N -9.469 -9.952 -0.999 -0.865 3.843 -4.211 OP3 XTY 25 XTY HO1P HO1P H 0 0 N N N -9.883 -11.185 1.020 -1.179 5.288 -1.659 HO1P XTY 26 XTY HO3P HO3P H 0 0 N N N -9.396 -9.279 -1.666 -1.466 4.510 -4.604 HO3P XTY 27 XTY "H5'1" "1H5'" H 0 0 N N N -7.610 -8.232 -1.128 -0.100 1.980 -1.551 "H5'1" XTY 28 XTY "H5'2" "2H5'" H 0 0 N N N -6.994 -9.490 0.029 -0.294 1.530 -3.265 "H5'2" XTY 29 XTY "H4'" "H4'" H 0 1 N N N -5.670 -8.085 1.102 2.032 0.577 -3.231 "H4'" XTY 30 XTY "H3'" "H3'" H 0 1 N N N -7.772 -6.381 1.561 -0.203 -0.773 -2.272 "H3'" XTY 31 XTY "H2'1" "1H2'" H 0 0 N N N -6.596 -4.175 0.462 0.867 -1.543 0.116 "H2'1" XTY 32 XTY "H2'2" "2H2'" H 0 0 N N N -7.693 -5.090 -0.528 0.004 0.007 -0.001 "H2'2" XTY 33 XTY "H1'" "H1'" H 0 1 N N N -4.629 -5.129 -0.522 3.010 -0.495 -0.113 "H1'" XTY 34 XTY HN3 HN3 H 0 1 N N N -3.514 -8.005 -5.886 4.006 -1.238 5.476 HN3 XTY 35 XTY HN HN H 0 1 N N N -4.188 -7.266 -1.900 3.167 -1.432 1.466 HN XTY 36 XTY HP HP H 0 1 N N N -6.437 -4.354 -5.977 2.105 3.002 4.482 HP XTY 37 XTY HD HD H 0 1 N N N -7.142 -3.597 -1.808 1.267 2.692 0.280 HD XTY 38 XTY H7A1 1H7A H 0 0 N N N -8.020 -2.107 -3.393 1.871 5.088 2.658 H7A1 XTY 39 XTY H7A2 2H7A H 0 0 N N N -7.303 -2.057 -5.039 0.682 4.644 1.408 H7A2 XTY 40 XTY H7A3 3H7A H 0 0 N N N -8.737 -3.090 -4.714 0.264 4.469 3.111 H7A3 XTY 41 XTY "HO3'" H3T H 0 0 N Y N -4.952 -5.829 1.677 1.052 -2.207 -2.988 "HO3'" XTY 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XTY P OP3 SING N N 1 XTY P OP2 DOUB N N 2 XTY P "O5'" SING N N 3 XTY P OP1 SING N N 4 XTY OP1 HO1P SING N N 5 XTY "C5'" "C4'" SING N N 6 XTY "C5'" "O5'" SING N N 7 XTY "C5'" "H5'1" SING N N 8 XTY "C5'" "H5'2" SING N N 9 XTY "C4'" "O4'" SING N N 10 XTY "C4'" "C3'" SING N N 11 XTY "C4'" "H4'" SING N N 12 XTY "O4'" "C1'" SING N N 13 XTY "C3'" "C2'" SING N N 14 XTY "C3'" "O3'" SING N N 15 XTY "C3'" "H3'" SING N N 16 XTY "C2'" "C1'" SING N N 17 XTY "C2'" "H2'1" SING N N 18 XTY "C2'" "H2'2" SING N N 19 XTY "C1'" C8 SING N N 20 XTY "C1'" "H1'" SING N N 21 XTY C2 N3 SING N N 22 XTY C2 O2 DOUB N N 23 XTY C2 N SING N N 24 XTY N3 C4 SING N N 25 XTY N3 HN3 SING N N 26 XTY C4 O4 DOUB N N 27 XTY C4 C5 SING N N 28 XTY C5 CP DOUB Y N 29 XTY C5 C6 SING Y N 30 XTY C6 N SING N N 31 XTY C6 C8 DOUB Y N 32 XTY N HN SING N N 33 XTY CP C7 SING Y N 34 XTY CP HP SING N N 35 XTY CD C7 DOUB Y N 36 XTY CD C8 SING Y N 37 XTY CD HD SING N N 38 XTY C7 C7A SING N N 39 XTY C7A H7A1 SING N N 40 XTY C7A H7A2 SING N N 41 XTY C7A H7A3 SING N N 42 XTY "O3'" "HO3'" SING N N 43 XTY OP3 HO3P SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XTY SMILES ACDLabs 10.04 "O=P(OCC3OC(c2cc(cc1C(=O)NC(=O)Nc12)C)CC3O)(O)O" XTY SMILES_CANONICAL CACTVS 3.341 "Cc1cc([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)c3NC(=O)NC(=O)c3c1" XTY SMILES CACTVS 3.341 "Cc1cc([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)c3NC(=O)NC(=O)c3c1" XTY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2c(c1)C(=O)NC(=O)N2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" XTY SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2c(c1)C(=O)NC(=O)N2)C3CC(C(O3)COP(=O)(O)O)O" XTY InChI InChI 1.03 "InChI=1S/C14H17N2O8P/c1-6-2-7(12-8(3-6)13(18)16-14(19)15-12)10-4-9(17)11(24-10)5-23-25(20,21)22/h2-3,9-11,17H,4-5H2,1H3,(H2,20,21,22)(H2,15,16,18,19)/t9-,10+,11+/m0/s1" XTY InChIKey InChI 1.03 UTPMMFNXXUKJDB-HBNTYKKESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XTY "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-1,4-anhydro-2-deoxy-1-(6-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazolin-8-yl)-5-O-phosphono-D-erythro-pentitol" XTY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(6-methyl-2,4-dioxo-1H-quinazolin-8-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XTY "Create component" 2006-09-26 RCSB XTY "Modify descriptor" 2011-06-04 RCSB #